myRT

myRT report for GCA_008728475.1_ASM872847v1

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Seq: CP044274.1 Enterococcus faecium strain V2937 chromosome, complete genome (2896393 bp)
Overview 1 RT 1: 872943-877747 bp 2 RT 2: 1318504-1323880 bp 3 RT 3: 1504785-1509671 bp 4 RT 4: 2734572-2745486 bp Neighborhood of RT #1 [872943, 877758] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Neighborhood of RT #2 [1318504, 1323885] AraC_binding YesN ldh RVT-GII GIIM Doc doc_partner Neighborhood of RT #3 [1504785, 1509682] RVT-GII GIIM Adenylsuccinate_lyase_1 PRK06019 Neighborhood of RT #4 [2734572, 2745500] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Feature: gene Location: 872943-874127 bp Ori: QEX00975.1 Feature: domain Description: HTH_XRE Location: 872973-873117 bp Feature: domain Description: HTH_XRE Location: 872973-8731 1 7 bp Feature: domain Description: Rol_Rep_N Location: 873150-873414 bp Feature: domain Description: Rol_Rep_N Location: 8731 50-87341 4 bp Feature: domain Description: Rep_trans Location: 873438-874050 bp Feature: domain Description: Rep_trans Location: 873438-874050 bp Feature: gene Location: 874124-874261 bp Ori: QEX00976.1 Feature: domain Description: DUF3789 Location: 874151-874244 bp Feature: domain Description: DUF3789 Location: 8741 51 -874244 bp Feature: gene Location: 875007-876917 bp Ori: QEX00977.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 875340-876078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 875340-876078 bp Feature: domain Description: HNHc Note: nucleases Location: 876633-876798 bp Feature: domain Description: HNHc Note: nucleases Location: 876633-876798 bp Feature: gene Location: 877021-877245 bp Feature: gene Location: 877258-877758 bp Ori: QEX00979.1 Feature: domain Description: ArdA Location: 877276-877747 bp Feature: domain Description: ArdA Location: 877276-877747 bp Feature: gene Location: 1318504-1319448 bp Ori: QEX01371.1 Feature: domain Description: AraC_binding Location: 1318645-1318828 bp Feature: domain Description: AraC_binding Location: 1 31 8645-1 31 8828 bp Feature: domain Description: YesN Location: 1318930-1319446 bp Feature: domain Description: YesN Location: 1 31 8930-1 31 9446 bp Feature: gene Location: 1319744-1320688 bp Ori: QEX01372.1 Feature: domain Description: ldh Location: 1319747-1320683 bp Feature: domain Description: ldh Location: 1 31 9747-1 320683 bp Feature: gene Location: 1320787-1322175 bp Ori: QEX01373.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1321108-1321723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 321 1 08-1 321 723 bp Feature: domain Description: GIIM Note: maturase Location: 1321780-1321996 bp Feature: domain Description: GIIM Note: maturase Location: 1 321 780-1 321 996 bp Feature: gene Location: 1323254-1323652 bp Ori: QEX01374.1 Feature: domain Description: Doc Location: 1323263-1323623 bp Feature: domain Description: Doc Location: 1 323263-1 323623 bp Feature: gene Location: 1323649-1323885 bp Ori: QEX01375.1 Feature: domain Description: doc_partner Location: 1323670-1323880 bp Feature: domain Description: doc_partner Location: 1 323670-1 323880 bp Feature: gene Location: 1504785-1505162 bp Feature: gene Location: 1505175-1505363 bp Feature: gene Location: 1505731-1507119 bp Ori: QEX01537.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1506052-1506667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 506052-1 506667 bp Feature: domain Description: GIIM Note: maturase Location: 1506724-1506940 bp Feature: domain Description: GIIM Note: maturase Location: 1 506724-1 506940 bp Feature: gene Location: 1507241-1508536 bp Ori: QEX01538.1 Gene: purB Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1507253-1508522 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1 507253-1 508522 bp Feature: gene Location: 1508549-1509682 bp Ori: QEX01539.1 Gene: purK Feature: domain Description: PRK06019 Location: 1508582-1509671 bp Feature: domain Description: PRK0601 9 Location: 1 508582-1 509671 bp Feature: gene Location: 2734572-2734925 bp Ori: QEX02614.1 Feature: domain Description: RelB_DinJ Location: 2734791-2734917 bp Feature: domain Description: RelB_DinJ Location: 2734791 -273491 7 bp Feature: gene Location: 2734994-2736010 bp Ori: QEX02615.1 Feature: domain Description: FtsK_SpoIIIE Location: 2735651-2735891 bp Feature: domain Description: FtsK_SpoIIIE Location: 2735651 -2735891 bp Feature: gene Location: 2736604-2738478 bp Ori: QEX02616.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2736970-2737666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2736970-2737666 bp Feature: domain Description: HNHc Note: nucleases Location: 2738206-2738365 bp Feature: domain Description: HNHc Note: nucleases Location: 2738206-2738365 bp Feature: gene Location: 2738490-2738576 bp Feature: gene Location: 2738604-2738960 bp Ori: QEX02846.1 Feature: domain Description: FtsK Location: 2738616-2738835 bp Feature: domain Description: FtsK Location: 273861 6-2738835 bp Feature: gene Location: 2740682-2741866 bp Ori: QEX02618.1 Feature: domain Description: HTH_XRE Location: 2740712-2740856 bp Feature: domain Description: HTH_XRE Location: 274071 2-2740856 bp Feature: domain Description: Rol_Rep_N Location: 2740889-2741153 bp Feature: domain Description: Rol_Rep_N Location: 2740889-2741 1 53 bp Feature: domain Description: Rep_trans Location: 2741177-2741789 bp Feature: domain Description: Rep_trans Location: 2741 1 77-2741 789 bp Feature: gene Location: 2741863-2741976 bp Ori: QEX02619.1 Feature: domain Description: DUF3789 Location: 2741890-2741974 bp Feature: domain Description: DUF3789 Location: 2741 890-2741 974 bp Feature: gene Location: 2742746-2744656 bp Ori: QEX02620.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2743079-2743817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2743079-274381 7 bp Feature: domain Description: HNHc Note: nucleases Location: 2744372-2744537 bp Feature: domain Description: HNHc Note: nucleases Location: 2744372-2744537 bp Feature: gene Location: 2744760-2744984 bp Feature: gene Location: 2744997-2745500 bp Ori: QEX02622.1 Feature: domain Description: ArdA Location: 2745015-2745486 bp Feature: domain Description: ArdA Location: 274501 5-2745486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), RVT-GII, HNHc (smart00507), ArdA (pfam07275), AraC_binding (pfam02311), YesN (COG4753), ldh (PRK00066)
GIIM (pfam08388), Doc (COG3654), doc_partner (TIGR02609), Adenylsuccinate_lyase_1 (cd01360), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), FtsK (COG1674)