myRT

myRT report for GCA_008728495.1_ASM872849v1

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Seq: CP044257.1 Salmonella enterica strain CFSAN096147 chromosome, complete genome (4757321 bp)
Overview 1 RT 1: 1103029-1106932 bp 2 RT 2: 4190262-4196091 bp Neighborhood of RT #1 [1103029, 1106932] RVT-Retrons TIR-like Neighborhood of RT #2 [4190262, 4196096] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 1103029-1103870 bp Feature: gene Location: 1104551-1104778 bp Feature: gene Location: 1104809-1105768 bp Ori: QEX04466.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1104989-1105511 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 04989-1 1 0551 1 bp Feature: gene Location: 1105818-1106657 bp Ori: QEX04467.1 Feature: domain Description: TIR-like Location: 1106223-1106577 bp Feature: domain Description: TIR-like Location: 1 1 06223-1 1 06577 bp Feature: gene Location: 1106723-1106932 bp Feature: gene Location: 4190262-4190615 bp Ori: QEX07264.1 Feature: domain Description: DUF4156 Location: 4190331-4190607 bp Feature: domain Description: DUF41 56 Location: 41 90331 -41 90607 bp Feature: gene Location: 4190970-4191200 bp Ori: QEX07863.1 Feature: domain Description: DUF2188 Location: 4190988-4191165 bp Feature: domain Description: DUF21 88 Location: 41 90988-41 91 1 65 bp Feature: gene Location: 4191346-4193037 bp Ori: QEX07864.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4191427-4191661 bp Feature: domain Description: RVT_N Location: 41 91 427-41 91 661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4191715-4192360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 91 71 5-41 92360 bp Feature: domain Description: GIIM Note: maturase Location: 4192414-4192645 bp Feature: domain Description: GIIM Note: maturase Location: 41 9241 4-41 92645 bp Feature: domain Description: HNHc Note: nucleases Location: 4192855-4193011 bp Feature: domain Description: HNHc Note: nucleases Location: 41 92855-41 9301 1 bp Feature: gene Location: 4194113-4195759 bp Ori: QEX07265.1 Gene: groL Feature: domain Description: groEL Location: 4194119-4195745 bp Feature: domain Description: groEL Location: 41 941 1 9-41 95745 bp Feature: gene Location: 4195803-4196096 bp Ori: QEX07266.1 Feature: domain Description: groES Location: 4195806-4196091 bp Feature: domain Description: groES Location: 41 95806-41 96091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR-like (pfam10137), DUF4156 (pfam13698), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)