myRT

myRT report for GCA_008728695.1_ASM872869v1

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Seq: CP041375.1 Klebsiella pneumoniae strain KP58 plasmid pKP58-2, complete sequence (134972 bp)
Overview 1 RT 1: 23672-27893 bp 2 RT 2: 100152-104234 bp Neighborhood of RT #1 [23672, 27893] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [100152, 104371] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 23672-24094 bp Ori: QEX45298.1 Feature: domain Description: DUF1380 Location: 23675-23969 bp Feature: domain Description: DUF1 380 Location: 23675-23969 bp Feature: gene Location: 24091-24282 bp Feature: gene Location: 24596-26263 bp Ori: QEX45300.1 Gene: ltrA Feature: domain Description: RVT_N Location: 24644-24881 bp Feature: domain Description: RVT_N Location: 24644-24881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24932-25574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24932-25574 bp Feature: domain Description: GIIM Note: maturase Location: 25625-25859 bp Feature: domain Description: GIIM Note: maturase Location: 25625-25859 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: gene Location: 27143-27400 bp Feature: gene Location: 27663-27893 bp Feature: gene Location: 100152-100583 bp Ori: QEX45371.1 Gene: umuD Feature: domain Description: PRK10276 Location: 100203-100566 bp Feature: domain Description: PRK1 0276 Location: 1 00203-1 00566 bp Feature: gene Location: 100742-100993 bp Feature: gene Location: 100993-102477 bp Ori: QEX45427.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101395-102085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 395-1 02085 bp Feature: gene Location: 102726-103697 bp Ori: QEX45373.1 Feature: domain Description: StbA Location: 102729-103674 bp Feature: domain Description: StbA Location: 1 02729-1 03674 bp Feature: gene Location: 103700-104371 bp Ori: QEX45374.1 Feature: domain Description: Plasmid_stab_B Location: 103715-103922 bp Feature: domain Description: Plasmid_stab_B Location: 1 0371 5-1 03922 bp Feature: domain Description: Plasmid_stab_B Location: 104027-104234 bp Feature: domain Description: Plasmid_stab_B Location: 1 04027-1 04234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP041377.1 Klebsiella pneumoniae strain KP58 plasmid pKP58-4, complete sequence (11970 bp)
Overview 1 RT 1: 5146-9580 bp Neighborhood of RT #1 [5146, 9580] Cloacin_immun Cloacin E2R135 Cytotoxic RVT-GII Feature: gene Location: 5146-5403 bp Ori: QEX45538.1 Feature: domain Description: Cloacin_immun Location: 5152-5389 bp Feature: domain Description: Cloacin_immun Location: 5152 -5389 bp Feature: gene Location: 5413-7098 bp Ori: QEX45539.1 Feature: domain Description: Cloacin Location: 5548-6370 bp Feature: domain Description: Cloacin Location: 5548-6370 bp Feature: domain Description: E2R135 Location: 6379-6784 bp Feature: domain Description: E2 R135 Location: 6379-6784 bp Feature: domain Description: Cytotoxic Location: 6838-7087 bp Feature: domain Description: Cytotoxic Location: 6838-7087 bp Feature: gene Location: 7203-8687 bp Ori: QEX45546.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7605-8295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7605-82 95 bp Feature: gene Location: 8687-8938 bp Feature: gene Location: 9335-9580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cloacin_immun (pfam03513), Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000), RVT-GII

Seq: CP041373.1 Klebsiella pneumoniae strain KP58 chromosome, complete genome (5483867 bp)
Overview 1 RT 1: 1216016-1220901 bp 2 RT 2: 1381364-1384139 bp 3 RT 3: 1845546-1850418 bp 4 RT 4: 1866159-1872421 bp 5 RT 5: 3119385-3123523 bp 6 RT 6: 3271777-3275876 bp 7 RT 7: 3347009-3351271 bp 8 RT 8: 3707670-3711696 bp 9 RT 9: 3715381-3720219 bp Neighborhood of RT #1 [1216016, 1220906] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1381364, 1384139] RVT-GII Neighborhood of RT #3 [1845546, 1850432] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1866159, 1872421] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3119385, 3123523] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3271777, 3275887] umuC PRK10276 RVT-GII DinI Neighborhood of RT #7 [3347009, 3351309] PRK10597 RVT-GII PRK05318 Neighborhood of RT #8 [3707670, 3712580] DinI RVT-GII Phage_GPA Neighborhood of RT #9 [3715381, 3720269] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1216016-1218400 bp Ori: QEX40997.1 Feature: domain Description: Phage_GPA Location: 1216580-1217546 bp Feature: domain Description: Phage_GPA Location: 1216580-1217546 bp Feature: gene Location: 1218630-1218881 bp Feature: gene Location: 1218881-1220365 bp Ori: QEX44891.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1219283-1219973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1219283 -1219973 bp Feature: gene Location: 1220473-1220661 bp Feature: gene Location: 1220673-1220906 bp Ori: QEX41000.1 Feature: domain Description: DinI Location: 1220718-1220901 bp Feature: domain Description: DinI Location: 1220718-1220901 bp Feature: gene Location: 1381364-1381567 bp Feature: gene Location: 1381560-1381898 bp Feature: gene Location: 1381995-1383479 bp Ori: QEX44898.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1382397-1383087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 823 97-13 83 087 bp Feature: gene Location: 1383479-1383730 bp Feature: gene Location: 1383882-1384139 bp Feature: gene Location: 1845546-1846715 bp Ori: QEX41554.1 Gene: dacD Feature: domain Description: dacD Location: 1845555-1846710 bp Feature: domain Description: dacD Location: 1845555-1846710 bp Feature: gene Location: 1846985-1847236 bp Feature: gene Location: 1847236-1848720 bp Ori: QEX44917.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1847638-1848328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184763 8-18483 28 bp Feature: gene Location: 1848802-1849275 bp Ori: QEX41556.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1848805-1849264 bp Feature: domain Description: PRK10016 Location: 1848805-1849264 bp Feature: gene Location: 1849374-1850432 bp Ori: QEX41557.1 Feature: domain Description: YccC Location: 1849380-1850418 bp Feature: domain Description: YccC Location: 18493 80-1850418 bp Feature: gene Location: 1866159-1867262 bp Ori: QEX41576.1 Feature: domain Description: STKc_PknB_like Location: 1866291-1866732 bp Feature: domain Description: STKc_PknB_like Location: 1866291-186673 2 bp Feature: gene Location: 1867332-1867574 bp Feature: gene Location: 1867821-1868921 bp Ori: QEX41577.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1868004-1868532 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1868004-186853 2 bp Feature: gene Location: 1869036-1871282 bp Ori: QEX41578.1 Feature: domain Description: AAA_15 Location: 1869039-1870047 bp Feature: domain Description: AAA_15 Location: 186903 9-1870047 bp Feature: gene Location: 1872191-1872421 bp Feature: gene Location: 3119385-3120650 bp Ori: QEX42735.1 Feature: domain Description: umuC Location: 3119388-3120648 bp Feature: domain Description: umuC Location: 3 1193 88-3 120648 bp Feature: gene Location: 3120652-3121071 bp Ori: QEX42736.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3120655-3121066 bp Feature: domain Description: PRK10276 Location: 3 120655-3 121066 bp Feature: gene Location: 3121151-3122635 bp Ori: QEX44986.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3121553-3122243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 121553 -3 122243 bp Feature: gene Location: 3122635-3122886 bp Feature: gene Location: 3123434-3123523 bp Feature: gene Location: 3271777-3273042 bp Ori: QEX42884.1 Feature: domain Description: umuC Location: 3271780-3273040 bp Feature: domain Description: umuC Location: 3 271780-3 273 040 bp Feature: gene Location: 3273045-3273464 bp Ori: QEX42885.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3273048-3273459 bp Feature: domain Description: PRK10276 Location: 3 273 048-3 273 459 bp Feature: gene Location: 3273543-3275027 bp Ori: QEX44993.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3273945-3274635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 273 945-3 27463 5 bp Feature: gene Location: 3275027-3275278 bp Feature: gene Location: 3275645-3275887 bp Ori: QEX42887.1 Feature: domain Description: DinI Location: 3275696-3275876 bp Feature: domain Description: DinI Location: 3 275696-3 275876 bp Feature: gene Location: 3347009-3347299 bp Feature: gene Location: 3347311-3347544 bp Ori: QEX42960.1 Feature: domain Description: PRK10597 Location: 3347314-3347539 bp Feature: domain Description: PRK10597 Location: 3 3 473 14-3 3 4753 9 bp Feature: gene Location: 3347623-3349107 bp Ori: QEX44998.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3348025-3348715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 48025-3 3 48715 bp Feature: gene Location: 3349107-3349358 bp Feature: gene Location: 3349948-3351309 bp Ori: QEX42962.1 Feature: domain Description: PRK05318 Location: 3349972-3351271 bp Feature: domain Description: PRK053 18 Location: 3 3 49972-3 3 51271 bp Feature: gene Location: 3707670-3707975 bp Ori: QEX43294.1 Feature: domain Description: DinI Location: 3707784-3707970 bp Feature: domain Description: DinI Location: 3 707784-3 707970 bp Feature: gene Location: 3707914-3708102 bp Feature: gene Location: 3708203-3709687 bp Ori: QEX45019.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3708605-3709295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 708605-3 709295 bp Feature: gene Location: 3709687-3709938 bp Feature: gene Location: 3710166-3712580 bp Ori: QEX43296.1 Feature: domain Description: Phage_GPA Location: 3710730-3711696 bp Feature: domain Description: Phage_GPA Location: 3 71073 0-3 711696 bp Feature: gene Location: 3715381-3716259 bp Ori: QEX45021.1 Feature: domain Description: Phage_CI_repr Location: 3715408-3715591 bp Feature: domain Description: Phage_CI_repr Location: 3 715408-3 715591 bp Feature: domain Description: Phage_CI_repr Location: 3715720-3715912 bp Feature: domain Description: Phage_CI_repr Location: 3 715720-3 715912 bp Feature: domain Description: Phage_CI_C Location: 3715939-3716233 bp Feature: domain Description: Phage_CI_C Location: 3 71593 9-3 71623 3 bp Feature: gene Location: 3716271-3717215 bp Feature: gene Location: 3717314-3718798 bp Ori: QEX45022.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3717716-3718406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 717716-3 718406 bp Feature: gene Location: 3718798-3719049 bp Feature: gene Location: 3719217-3720269 bp Ori: QEX43306.1 Feature: domain Description: int Location: 3719220-3720219 bp Feature: domain Description: int Location: 3 719220-3 720219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)

Seq: CP041376.1 Klebsiella pneumoniae strain KP58 plasmid pKP58-3, complete sequence (87095 bp)
Overview 1 RT 1: 62820-66520 bp Neighborhood of RT #1 [62820, 66618] umuC PRK10276 RVT-GII DUF2913 Feature: gene Location: 62820-63599 bp Ori: QEX45503.1 Feature: domain Description: umuC Location: 62823-63585 bp Feature: domain Description: umuC Location: 62823-63585 bp Feature: gene Location: 63599-64024 bp Ori: QEX45504.1 Gene: umuD Feature: domain Description: PRK10276 Location: 63650-64010 bp Feature: domain Description: PRK10276 Location: 63650-64 010 bp Feature: gene Location: 64102-65586 bp Ori: QEX45530.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64504-65194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 504 -65194 bp Feature: gene Location: 65586-65837 bp Feature: gene Location: 66004-66618 bp Ori: QEX45506.1 Feature: domain Description: DUF2913 Location: 66034-66520 bp Feature: domain Description: DUF2913 Location: 66034 -66520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DUF2913 (pfam11140)