myRT

myRT report for GCA_008761535.3_ASM876153v3

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Seq: CP044315.2 Escherichia coli strain SJ7 chromosome, complete genome (5444105 bp)
Overview 1 RT 1: 3702-7240 bp 2 RT 2: 1121965-1126387 bp 3 RT 3: 4009560-4013674 bp 4 RT 4: 4166103-4170208 bp Neighborhood of RT #1 [3702, 7242] DUF932 RVT-GII DUF932 DUF905 Neighborhood of RT #2 [1121965, 1126387] Antirestrict DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Neighborhood of RT #3 [4009560, 4013676] DUF905 DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Antirestrict Neighborhood of RT #4 [4166103, 4170208] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 3702-4142 bp Feature: domain Description: DUF932 Location: 3714-4107 bp Feature: domain Description: DUF932 Location: 371 4-41 07 bp Feature: gene Location: 4316-4633 bp Feature: gene Location: 4686-6039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4947-5274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4947-5274 bp Feature: gene Location: 6549-6929 bp Feature: domain Description: DUF932 Location: 6660-6927 bp Feature: domain Description: DUF932 Location: 6660-6927 bp Feature: gene Location: 7084-7242 bp Ori: QEX71849.1 Feature: domain Description: DUF905 Location: 7108-7240 bp Feature: domain Description: DUF905 Location: 71 08-7240 bp Feature: gene Location: 1121965-1122444 bp Ori: QEX72805.1 Feature: domain Description: Antirestrict Location: 1122157-1122442 bp Feature: domain Description: Antirestrict Location: 1 1 221 57-1 1 22442 bp Feature: gene Location: 1122526-1122966 bp Feature: domain Description: DUF932 Location: 1122538-1122931 bp Feature: domain Description: DUF932 Location: 1 1 22538-1 1 22931 bp Feature: gene Location: 1123085-1124863 bp Ori: QEX72806.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1123346-1124141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 23346-1 1 241 41 bp Feature: domain Description: Intron_maturas2 Location: 1124267-1124492 bp Feature: domain Description: Intron_maturas2 Location: 1 1 24267-1 1 24492 bp Feature: domain Description: HNHc Note: nucleases Location: 1124687-1124837 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 24687-1 1 24837 bp Feature: gene Location: 1125373-1125756 bp Feature: domain Description: DUF932 Location: 1125487-1125754 bp Feature: domain Description: DUF932 Location: 1 1 25487-1 1 25754 bp Feature: gene Location: 1125977-1126387 bp Feature: gene Location: 4009560-4009718 bp Ori: QEX75475.1 Feature: domain Description: DUF905 Location: 4009584-4009716 bp Feature: domain Description: DUF905 Location: 4009584-400971 6 bp Feature: gene Location: 4009873-4010253 bp Feature: domain Description: DUF932 Location: 4009984-4010251 bp Feature: domain Description: DUF932 Location: 4009984-401 0251 bp Feature: gene Location: 4010763-4012541 bp Ori: QEX75477.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4011024-4011819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 1 024-401 1 81 9 bp Feature: domain Description: Intron_maturas2 Location: 4011945-4012170 bp Feature: domain Description: Intron_maturas2 Location: 401 1 945-401 21 70 bp Feature: domain Description: HNHc Note: nucleases Location: 4012365-4012515 bp Feature: domain Description: HNHc Note: nucleases Location: 401 2365-401 251 5 bp Feature: gene Location: 4012660-4013100 bp Feature: domain Description: DUF932 Location: 4012672-4013065 bp Feature: domain Description: DUF932 Location: 401 2672-401 3065 bp Feature: gene Location: 4013191-4013676 bp Ori: QEX75478.1 Feature: domain Description: Antirestrict Location: 4013389-4013674 bp Feature: domain Description: Antirestrict Location: 401 3389-401 3674 bp Feature: gene Location: 4166103-4166348 bp Feature: gene Location: 4166348-4166788 bp Feature: domain Description: DUF932 Location: 4166360-4166753 bp Feature: domain Description: DUF932 Location: 41 66360-41 66753 bp Feature: gene Location: 4166907-4168685 bp Ori: QGJ06349.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4167168-4167963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 671 68-41 67963 bp Feature: domain Description: Intron_maturas2 Location: 4168089-4168314 bp Feature: domain Description: Intron_maturas2 Location: 41 68089-41 6831 4 bp Feature: domain Description: HNHc Note: nucleases Location: 4168509-4168659 bp Feature: domain Description: HNHc Note: nucleases Location: 41 68509-41 68659 bp Feature: gene Location: 4169195-4169578 bp Feature: domain Description: DUF932 Location: 4169306-4169576 bp Feature: domain Description: DUF932 Location: 41 69306-41 69576 bp Feature: gene Location: 4169798-4170208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, DUF905 (pfam06006), Antirestrict (pfam03230), Intron_maturas2 (pfam01348), HNHc (smart00507)