myRT

myRT report for GCA_008807395.1_ASM880739v1

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Seq: CP043320.1 Pseudomonas sp. C27(2019) chromosome, complete genome (3217366 bp)
Overview 1 RT 1: 2122803-2130488 bp 2 RT 2: 3107663-3113668 bp Neighborhood of RT #1 [2122803, 2130520] IS5 RVT-UG1 MATE_tuaB_like HEPD Neighborhood of RT #2 [3107663, 3113790] COG4097 RVT_N RVT-GII YkfC Peptidase_C92 Feature: gene Location: 2122803-2125586 bp Feature: gene Location: 2125721-2126698 bp Ori: QEY59409.1 Feature: domain Description: IS5 Location: 2125910-2126666 bp Feature: domain Description: IS5 Location: 21 2591 0-21 26666 bp Feature: gene Location: 2126768-2127886 bp Ori: QEY59410.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2127395-2127851 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 21 27395-21 27851 bp Feature: gene Location: 2127890-2129359 bp Ori: QEY59411.1 Feature: domain Description: MATE_tuaB_like Location: 2127932-2129147 bp Feature: domain Description: MATE_tuaB_like Location: 21 27932-21 291 47 bp Feature: gene Location: 2129360-2130520 bp Ori: QEY59412.1 Feature: domain Description: HEPD Location: 2129399-2130488 bp Feature: domain Description: HEPD Location: 21 29399-21 30488 bp Feature: gene Location: 3107663-3108958 bp Ori: QEY60239.1 Feature: domain Description: COG4097 Location: 3107672-3108956 bp Feature: domain Description: COG4097 Location: 31 07672-31 08956 bp Feature: gene Location: 3109246-3109968 bp Feature: gene Location: 3110920-3112667 bp Gene: ltrA Feature: domain Description: RVT_N Location: 3110974-3111217 bp Feature: domain Description: RVT_N Location: 31 1 0974-31 1 1 21 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3111265-3111916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 1 265-31 1 1 91 6 bp Feature: domain Description: YkfC Location: 3112072-3112294 bp Feature: domain Description: YkfC Location: 31 1 2072-31 1 2294 bp Feature: gene Location: 3112799-3113029 bp Feature: gene Location: 3113143-3113790 bp Ori: QEY60242.1 Feature: domain Description: Peptidase_C92 Location: 3113293-3113668 bp Feature: domain Description: Peptidase_C92 Location: 31 1 3293-31 1 3668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-UG1, MATE_tuaB_like (cd13127), HEPD (cd08182), COG4097 (Predicted ferric reductase ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), Peptidase_C92 (pfam05708)