myRT

myRT report for GCA_008807655.1_ASM880765v1

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Seq: CP032145.1 Escherichia coli strain 15.TR.026_OXA chromosome, complete genome (5260440 bp)
Overview 1 RT 1: 294890-300784 bp 2 RT 2: 2239735-2243670 bp 3 RT 3: 4188137-4191575 bp 4 RT 4: 4206268-4210363 bp 5 RT 5: 4831853-4836144 bp Neighborhood of RT #1 [294890, 300921] Phage_ASH RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Neighborhood of RT #2 [2239735, 2243917] InsE RVT-GII GIIM PHA02517 PRK09413 Neighborhood of RT #3 [4188137, 4191709] Dps DDE_Tnp_IS66_C RVT-GII GIIM IstB_IS21_ATP IstB_IS21 COG4584 COG4584 Neighborhood of RT #4 [4206268, 4210413] InsE RVT-GII GIIM PHA02517 zinc_ribbon_11 Neighborhood of RT #5 [4831853, 4836144] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 294890-295360 bp Feature: gene Location: 295406-295546 bp Ori: QEZ37952.1 Feature: domain Description: Phage_ASH Location: 295433-295526 bp Feature: domain Description: Phage_ASH Location: 295433-295526 bp Feature: gene Location: 295707-298916 bp Ori: QEZ37953.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 296235-296724 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 296235-296724 bp Feature: domain Description: nitrilase Location: 298230-298827 bp Feature: domain Description: nitrilase Location: 298230-298827 bp Feature: gene Location: 299211-300014 bp Ori: QEZ37954.1 Feature: domain Description: AbiEi_3_N Location: 299244-299505 bp Feature: domain Description: AbiEi_3_N Location: 299244-299505 bp Feature: domain Description: AbiEi_3 Location: 299517-299973 bp Feature: domain Description: AbiEi_3 Location: 29951 7-299973 bp Feature: gene Location: 300001-300921 bp Ori: QEZ37955.1 Feature: domain Description: AbiEii Location: 300043-300784 bp Feature: domain Description: AbiEii Location: 300043-300784 bp Feature: gene Location: 2239735-2240474 bp Feature: domain Description: InsE Location: 2239738-2240074 bp Feature: domain Description: InsE Location: 2239738-2240074 bp Feature: gene Location: 2240467-2240838 bp Feature: gene Location: 2241132-2242655 bp Ori: QEZ39762.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2241405-2242137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2241 405-22421 37 bp Feature: domain Description: GIIM Note: maturase Location: 2242212-2242410 bp Feature: domain Description: GIIM Note: maturase Location: 224221 2-224241 0 bp Feature: gene Location: 2242745-2243218 bp Feature: domain Description: PHA02517 Location: 2242751-2243216 bp Feature: domain Description: PHA0251 7 Location: 2242751 -224321 6 bp Feature: gene Location: 2243262-2243917 bp Feature: domain Description: PRK09413 Location: 2243310-2243670 bp Feature: domain Description: PRK0941 3 Location: 224331 0-2243670 bp Feature: gene Location: 4188137-4188349 bp Feature: domain Description: Dps Location: 4188155-4188347 bp Feature: domain Description: Dps Location: 41 881 55-41 88347 bp Feature: gene Location: 4188393-4188572 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4188438-4188549 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 41 88438-41 88549 bp Feature: gene Location: 4188655-4189704 bp Ori: QEZ41574.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4188673-4189327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 88673-41 89327 bp Feature: domain Description: GIIM Note: maturase Location: 4189405-4189630 bp Feature: domain Description: GIIM Note: maturase Location: 41 89405-41 89630 bp Feature: gene Location: 4189846-4190601 bp Ori: QEZ41575.1 Feature: domain Description: IstB_IS21_ATP Location: 4189918-4190002 bp Feature: domain Description: IstB_IS21 _ATP Location: 41 8991 8-41 90002 bp Feature: domain Description: IstB_IS21 Location: 4190011-4190536 bp Feature: domain Description: IstB_IS21 Location: 41 9001 1 -41 90536 bp Feature: gene Location: 4190618-4191709 bp Feature: domain Description: COG4584 Location: 4190636-4191047 bp Feature: domain Description: COG4584 Location: 41 90636-41 91 047 bp Feature: domain Description: COG4584 Location: 4191161-4191575 bp Feature: domain Description: COG4584 Location: 41 91 1 61 -41 91 575 bp Feature: gene Location: 4206268-4207001 bp Feature: domain Description: InsE Location: 4206307-4206598 bp Feature: domain Description: InsE Location: 4206307-4206598 bp Feature: gene Location: 4206994-4207365 bp Feature: gene Location: 4207659-4209182 bp Ori: QEZ41594.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4207932-4208664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4207932-4208664 bp Feature: domain Description: GIIM Note: maturase Location: 4208739-4208937 bp Feature: domain Description: GIIM Note: maturase Location: 4208739-4208937 bp Feature: gene Location: 4209263-4209751 bp Feature: domain Description: PHA02517 Location: 4209266-4209716 bp Feature: domain Description: PHA0251 7 Location: 4209266-420971 6 bp Feature: gene Location: 4210003-4210413 bp Ori: QEZ41595.1 Feature: domain Description: zinc_ribbon_11 Location: 4210045-4210363 bp Feature: domain Description: zinc_ribbon_1 1 Location: 421 0045-421 0363 bp Feature: gene Location: 4831853-4833082 bp Ori: QEZ42124.1 Feature: domain Description: YesM Location: 4832333-4833074 bp Feature: domain Description: YesM Location: 4832333-4833074 bp Feature: gene Location: 4833155-4833343 bp Feature: gene Location: 4833665-4834186 bp Ori: QEZ42126.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4833671-4833953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4833671 -4833953 bp Feature: domain Description: GIIM Note: maturase Location: 4834001-4834181 bp Feature: domain Description: GIIM Note: maturase Location: 4834001 -48341 81 bp Feature: gene Location: 4834362-4834753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4834692-4834752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4834692-4834752 bp Feature: gene Location: 4834978-4835265 bp Feature: gene Location: 4835239-4836144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_ASH (pfam10554), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)
PRK09413 (IS2 repressor TnpA; Reviewed), Dps (COG0783), DDE_Tnp_IS66_C (pfam13817), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase ), zinc_ribbon_11 (pfam11682), YesM (COG2972)