myRT

myRT report for GCA_008823185.1_ASM882318v1

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Seq: CP042588.1 Escherichia coli strain PK6 chromosome, complete genome (4726527 bp)
Overview 1 RT 1: 1930273-1934646 bp 2 RT 2: 2883170-2886538 bp 3 RT 3: 3996823-4003123 bp Neighborhood of RT #1 [1930273, 1934645] YkfC InsG RVT-GII GIIM PHA02517 PRK10002 Neighborhood of RT #2 [2883170, 2886932] pgaB PHA02517 RVT-GII GIIM InsE Neighborhood of RT #3 [3996823, 4003350] PRK10597 SLATT_5 RVT-UG17 phage_tail_N 7tmA_amine_R-like Peptidase_S74 Feature: gene Location: 1930273-1930428 bp Ori: QFF94679.1 Feature: domain Description: YkfC Location: 1930282-1930423 bp Feature: domain Description: YkfC Location: 1 930282-1 930423 bp Feature: gene Location: 1930595-1931707 bp Ori: QFF94680.1 Feature: domain Description: InsG Location: 1930598-1931636 bp Feature: domain Description: InsG Location: 1 930598-1 931 636 bp Feature: gene Location: 1931764-1933146 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1931896-1932628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 931 896-1 932628 bp Feature: domain Description: GIIM Note: maturase Location: 1932703-1932901 bp Feature: domain Description: GIIM Note: maturase Location: 1 932703-1 932901 bp Feature: gene Location: 1933227-1933715 bp Feature: domain Description: PHA02517 Location: 1933230-1933704 bp Feature: domain Description: PHA0251 7 Location: 1 933230-1 933704 bp Feature: gene Location: 1933725-1934645 bp Feature: domain Description: PRK10002 Location: 1933728-1934646 bp Feature: domain Description: PRK1 0002 Location: 1 933728-1 934646 bp Feature: gene Location: 2883170-2883532 bp Feature: domain Description: pgaB Location: 2883173-2883485 bp Feature: domain Description: pgaB Location: 28831 73-2883485 bp Feature: gene Location: 2883494-2883982 bp Feature: domain Description: PHA02517 Location: 2883497-2883971 bp Feature: domain Description: PHA0251 7 Location: 2883497-2883971 bp Feature: gene Location: 2884063-2885571 bp Ori: QFF97230.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2884321-2885053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2884321 -2885053 bp Feature: domain Description: GIIM Note: maturase Location: 2885128-2885326 bp Feature: domain Description: GIIM Note: maturase Location: 28851 28-2885326 bp Feature: gene Location: 2885880-2886248 bp Feature: gene Location: 2886244-2886932 bp Feature: domain Description: InsE Location: 2886253-2886538 bp Feature: domain Description: InsE Location: 2886253-2886538 bp Feature: gene Location: 3996823-3997071 bp Ori: QFF96505.1 Feature: domain Description: PRK10597 Location: 3996826-3997066 bp Feature: domain Description: PRK1 0597 Location: 3996826-3997066 bp Feature: gene Location: 3997294-3997845 bp Ori: QFF96506.1 Feature: domain Description: SLATT_5 Location: 3997300-3997816 bp Feature: domain Description: SLATT_5 Location: 3997300-399781 6 bp Feature: gene Location: 3997823-3999193 bp Ori: QFF96507.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3998051-3998657 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 3998051 -3998657 bp Feature: gene Location: 3999293-3999508 bp Feature: gene Location: 3999631-4003350 bp Ori: QFF96508.1 Feature: domain Description: phage_tail_N Location: 3999634-4000033 bp Feature: domain Description: phage_tail_N Location: 3999634-4000033 bp Feature: domain Description: 7tmA_amine_R-like Location: 4000447-4002430 bp Feature: domain Description: 7tmA_amine_R-like Location: 4000447-4002430 bp Feature: domain Description: Peptidase_S74 Location: 4002976-4003123 bp Feature: domain Description: Peptidase_S74 Location: 4002976-40031 23 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), InsG (COG3385), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), PRK10002 (porin OmpF), pgaB (PRK14582), InsE (COG2963), PRK10597 (DNA damage-inducible protein I; Provisional), SLATT_5 (pfam18160)
RVT-UG17, phage_tail_N (pfam08400), 7tmA_amine_R-like (cd14967), Peptidase_S74 (pfam13884)