myRT

myRT report for GCA_008843145.1_ASM884314v1

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Seq: CP030265.1 Skermanella pratensis strain W17 chromosome, complete genome (5869433 bp)
Overview 1 RT 1: 217197-221249 bp 2 RT 2: 333660-341589 bp 3 RT 3: 1920423-1928410 bp 4 RT 4: 5342039-5357680 bp 5 RT 5: 5409993-5414968 bp 6 RT 6: 5433187-5440050 bp 7 RT 7: 5462530-5468157 bp 8 RT 8: 5559652-5566092 bp Neighborhood of RT #1 [217197, 221269] RVT-GII SpoU-like Asparaginase_II Neighborhood of RT #2 [333660, 341636] DsbC DsbD AlgH RVT-GII type_I_hlyD ArpD Neighborhood of RT #3 [1920423, 1928592] KOG0157 Transposase_mut Transposase_mut RVT-GII DDE_Tnp_1 TctA Neighborhood of RT #4 [5342039, 5357694] RhaT COG4190 RVT-GII GlxA GlxA PRK13252 DDE_Tnp_IS66 DDE_Tnp_IS66 RVT-GII betaine_BetI ABC_choline_bnd Neighborhood of RT #5 [5409993, 5414976] CaiB GxxExxY RVT-GII Phn-HD PRK13478 Neighborhood of RT #6 [5433187, 5440106] AceE Lrp RVT-GII SAM_adeno_trans TroA Neighborhood of RT #7 [5462530, 5468180] ModE modC_ABC RVT-GII modB PBP2_EcModA Neighborhood of RT #8 [5559652, 5566092] KdpC KdpD RVT-GII PRK10529 Feature: gene Location: 217197-217622 bp Feature: gene Location: 217352-217606 bp Feature: gene Location: 217898-219421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218297-218990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 8297-21 8990 bp Feature: gene Location: 219535-220068 bp Feature: domain Description: SpoU-like Location: 219550-219958 bp Feature: domain Description: SpoU-like Location: 21 9550-21 9958 bp Feature: gene Location: 220142-221269 bp Feature: domain Description: Asparaginase_II Location: 220283-221249 bp Feature: domain Description: Asparaginase_II Location: 220283-221 249 bp Feature: gene Location: 333660-335747 bp Feature: domain Description: DsbC Location: 333822-334134 bp Feature: domain Description: DsbC Location: 333822-3341 34 bp Feature: domain Description: DsbD Location: 334482-335742 bp Feature: domain Description: DsbD Location: 334482-335742 bp Feature: gene Location: 335887-336462 bp Feature: domain Description: AlgH Location: 335902-336460 bp Feature: domain Description: AlgH Location: 335902-336460 bp Feature: gene Location: 336559-338103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336958-337651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336958-337651 bp Feature: gene Location: 338555-339925 bp Feature: domain Description: type_I_hlyD Location: 338672-339923 bp Feature: domain Description: type_I_hlyD Location: 338672-339923 bp Feature: gene Location: 339927-341636 bp Feature: domain Description: ArpD Location: 339933-341589 bp Feature: domain Description: ArpD Location: 339933-341 589 bp Feature: gene Location: 1920423-1921886 bp Feature: domain Description: KOG0157 Location: 1920474-1921803 bp Feature: domain Description: KOG01 57 Location: 1 920474-1 921 803 bp Feature: gene Location: 1922670-1923272 bp Feature: domain Description: Transposase_mut Location: 1922682-1922991 bp Feature: domain Description: Transposase_mut Location: 1 922682-1 922991 bp Feature: domain Description: Transposase_mut Location: 1922991-1923027 bp Feature: domain Description: Transposase_mut Location: 1 922991 -1 923027 bp Feature: gene Location: 1923820-1925229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1924174-1924864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9241 74-1 924864 bp Feature: gene Location: 1925543-1926679 bp Feature: domain Description: DDE_Tnp_1 Location: 1925822-1926443 bp Feature: domain Description: DDE_Tnp_1 Location: 1 925822-1 926443 bp Feature: gene Location: 1927093-1928592 bp Feature: domain Description: TctA Location: 1927129-1928410 bp Feature: domain Description: TctA Location: 1 9271 29-1 92841 0 bp Feature: gene Location: 5342039-5342947 bp Feature: domain Description: RhaT Location: 5342093-5342933 bp Feature: domain Description: RhaT Location: 5342093-5342933 bp Feature: gene Location: 5343692-5344069 bp Feature: domain Description: COG4190 Location: 5343710-5344031 bp Feature: domain Description: COG41 90 Location: 534371 0-5344031 bp Feature: gene Location: 5344672-5346195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5345071-5345764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5345071 -5345764 bp Feature: gene Location: 5346614-5347690 bp Feature: domain Description: GlxA Location: 5346629-5347586 bp Feature: domain Description: GlxA Location: 5346629-5347586 bp Feature: gene Location: 5347687-5348694 bp Feature: domain Description: GlxA Location: 5347711-5348647 bp Feature: domain Description: GlxA Location: 534771 1 -5348647 bp Feature: gene Location: 5350596-5352065 bp Feature: domain Description: PRK13252 Location: 5350602-5352063 bp Feature: domain Description: PRK1 3252 Location: 5350602-5352063 bp Feature: gene Location: 5352227-5353786 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5352650-5352962 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5352650-5352962 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5353220-5353640 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5353220-5353640 bp Feature: gene Location: 5354072-5355595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5354471-5355164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5354471 -53551 64 bp Feature: gene Location: 5355994-5356566 bp Feature: domain Description: betaine_BetI Location: 5355997-5356546 bp Feature: domain Description: betaine_BetI Location: 5355997-5356546 bp Feature: gene Location: 5356546-5357694 bp Feature: domain Description: ABC_choline_bnd Location: 5356816-5357680 bp Feature: domain Description: ABC_choline_bnd Location: 535681 6-5357680 bp Feature: gene Location: 5409993-5411201 bp Feature: domain Description: CaiB Location: 5410008-5411193 bp Feature: domain Description: CaiB Location: 541 0008-541 1 1 93 bp Feature: gene Location: 5411247-5411627 bp Feature: domain Description: GxxExxY Location: 5411274-5411613 bp Feature: domain Description: GxxExxY Location: 541 1 274-541 1 61 3 bp Feature: gene Location: 5411656-5413179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5412055-5412748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541 2055-541 2748 bp Feature: gene Location: 5413568-5414134 bp Feature: domain Description: Phn-HD Location: 5413595-5414111 bp Feature: domain Description: Phn-HD Location: 541 3595-541 41 1 1 bp Feature: gene Location: 5414131-5414976 bp Feature: domain Description: PRK13478 Location: 5414182-5414968 bp Feature: domain Description: PRK1 3478 Location: 541 41 82-541 4968 bp Feature: gene Location: 5433187-5435610 bp Feature: domain Description: AceE Location: 5433217-5435593 bp Feature: domain Description: AceE Location: 543321 7-5435593 bp Feature: gene Location: 5435745-5436227 bp Feature: domain Description: Lrp Location: 5435748-5436207 bp Feature: domain Description: Lrp Location: 5435748-5436207 bp Feature: gene Location: 5436619-5438142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5437018-5437711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 543701 8-543771 1 bp Feature: gene Location: 5438236-5438964 bp Feature: domain Description: SAM_adeno_trans Location: 5438242-5438950 bp Feature: domain Description: SAM_adeno_trans Location: 5438242-5438950 bp Feature: gene Location: 5439123-5440106 bp Feature: domain Description: TroA Location: 5439234-5440050 bp Feature: domain Description: TroA Location: 5439234-5440050 bp Feature: gene Location: 5462530-5463006 bp Feature: domain Description: ModE Location: 5462536-5462860 bp Feature: domain Description: ModE Location: 5462536-5462860 bp Feature: gene Location: 5463105-5464214 bp Feature: domain Description: modC_ABC Location: 5463114-5464170 bp Feature: domain Description: modC_ABC Location: 54631 1 4-54641 70 bp Feature: gene Location: 5464378-5465922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5464777-5465470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5464777-5465470 bp Feature: gene Location: 5466307-5466996 bp Feature: domain Description: modB Location: 5466310-5466985 bp Feature: domain Description: modB Location: 546631 0-5466985 bp Feature: gene Location: 5467011-5468180 bp Feature: domain Description: PBP2_EcModA Location: 5467482-5468157 bp Feature: domain Description: PBP2_EcModA Location: 5467482-54681 57 bp Feature: gene Location: 5559652-5560218 bp Feature: domain Description: KdpC Location: 5559670-5560210 bp Feature: domain Description: KdpC Location: 5559670-556021 0 bp Feature: gene Location: 5560317-5562893 bp Feature: domain Description: KdpD Location: 5560323-5562876 bp Feature: domain Description: KdpD Location: 5560323-5562876 bp Feature: gene Location: 5563288-5564811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5563687-5564380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5563687-5564380 bp Feature: gene Location: 5564949-5565641 bp Feature: domain Description: PRK10529 Location: 5564955-5565618 bp Feature: domain Description: PRK1 0529 Location: 5564955-556561 8 bp Feature: gene Location: 5565658-5566092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SpoU-like (cd18098), Asparaginase_II (pfam06089), DsbC (pfam11412), DsbD (pfam02683), AlgH (COG1678), type_I_hlyD (TIGR01843), ArpD (COG4618), KOG0157 (KOG0157, Cytochrome P450 CYP4/CYP19/CYP26 subfamilies ), Transposase_mut (pfam00872)
DDE_Tnp_1 (pfam01609), TctA (pfam01970), RhaT (TIGR00776), COG4190 (Predicted transcriptional regulator ), GlxA (COG4977), PRK13252 (betaine aldehyde dehydrogenase; Provisional), DDE_Tnp_IS66 (pfam03050), betaine_BetI (TIGR03384), ABC_choline_bnd (TIGR03414), CaiB (COG1804)
GxxExxY (TIGR04256), Phn-HD (TIGR03276), PRK13478 (phosphonoacetaldehyde hydrolase; Provisional), AceE (COG2609), Lrp (COG1522), SAM_adeno_trans (pfam01887), TroA (cd01016), ModE (COG2005), modC_ABC (TIGR02142), modB (PRK09421)
PBP2_EcModA (cd13536), KdpC (pfam02669), KdpD (pfam02702), PRK10529 (DNA-binding transcriptional activator KdpE; Provisional)