myRT

myRT report for GCA_008926505.1_ASM892650v1

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Seq: CP044411.1 Acidithiobacillus sp. 'AMD consortium' chromosome, complete genome (2933811 bp)
Overview 1 RT 1: 981392-984927 bp 2 RT 2: 2011490-2016220 bp 3 RT 3: 2245535-2250699 bp Neighborhood of RT #1 [981392, 984944] BrnA_antitoxin RVT-GII IbpA Lon Neighborhood of RT #2 [2011490, 2016243] HTH_Tnp_1 HTH_Tnp_1 YkfC RVT-GII Phage_int_SAM_1 INT_RitA_C_like Neighborhood of RT #3 [2245535, 2251112] VagC PHA02517 RVT-GII GIIM InsE HD_6 Feature: gene Location: 981392-981601 bp Ori: QFG78097.1 Feature: domain Description: BrnA_antitoxin Location: 981425-981563 bp Feature: domain Description: BrnA_antitoxin Location: 981 425-981 563 bp Feature: gene Location: 981739-981918 bp Feature: gene Location: 981933-982034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981936-982035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981 936-982035 bp Feature: gene Location: 982177-982581 bp Ori: QFG78099.1 Feature: domain Description: IbpA Location: 982225-982564 bp Feature: domain Description: IbpA Location: 982225-982564 bp Feature: gene Location: 982578-984944 bp Ori: QFG78100.1 Gene: lon Feature: domain Description: Lon Location: 982638-984927 bp Feature: domain Description: Lon Location: 982638-984927 bp Feature: gene Location: 2011490-2012436 bp Feature: domain Description: HTH_Tnp_1 Location: 2011496-2011655 bp Feature: domain Description: HTH_Tnp_1 Location: 201 1 496-201 1 655 bp Feature: domain Description: HTH_Tnp_1 Location: 2011673-2011895 bp Feature: domain Description: HTH_Tnp_1 Location: 201 1 673-201 1 895 bp Feature: gene Location: 2013114-2013284 bp Feature: domain Description: YkfC Location: 2013117-2013279 bp Feature: domain Description: YkfC Location: 201 31 1 7-201 3279 bp Feature: gene Location: 2013545-2014573 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2013635-2014373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 3635-201 4373 bp Feature: gene Location: 2014663-2014842 bp Feature: gene Location: 2014999-2016243 bp Ori: QFG78976.1 Feature: domain Description: Phage_int_SAM_1 Location: 2015374-2015611 bp Feature: domain Description: Phage_int_SAM_1 Location: 201 5374-201 561 1 bp Feature: domain Description: INT_RitA_C_like Location: 2015692-2016220 bp Feature: domain Description: INT_RitA_C_like Location: 201 5692-201 6220 bp Feature: gene Location: 2245535-2245765 bp Ori: QFG79206.1 Feature: domain Description: VagC Location: 2245544-2245760 bp Feature: domain Description: VagC Location: 2245544-2245760 bp Feature: gene Location: 2246282-2246776 bp Feature: domain Description: PHA02517 Location: 2246288-2246750 bp Feature: domain Description: PHA0251 7 Location: 2246288-2246750 bp Feature: gene Location: 2246867-2248384 bp Ori: QFG79985.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2247125-2247863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22471 25-2247863 bp Feature: domain Description: GIIM Note: maturase Location: 2247971-2248136 bp Feature: domain Description: GIIM Note: maturase Location: 2247971 -22481 36 bp Feature: gene Location: 2249064-2249809 bp Feature: domain Description: InsE Location: 2249067-2249382 bp Feature: domain Description: InsE Location: 2249067-2249382 bp Feature: gene Location: 2250072-2251112 bp Ori: QFG79207.1 Feature: domain Description: HD_6 Location: 2250090-2250699 bp Feature: domain Description: HD_6 Location: 2250090-2250699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BrnA_antitoxin (pfam14384), RVT-GII, IbpA (COG0071), Lon (COG0466), HTH_Tnp_1 (pfam01527), YkfC (COG3344), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), VagC (COG4456), PHA02517 (putative transposase OrfB; Reviewed)
GIIM (pfam08388), InsE (COG2963), HD_6 (pfam18019)