myRT

myRT report for GCA_008931425.1_ASM893142v1

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Seq: CP042513.1 Serratia marcescens strain E28 plasmid pE28_001, complete sequence (186249 bp)
Overview 1 RT 1: 175910-180105 bp Neighborhood of RT #1 [175910, 180119] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 Feature: gene Location: 175910-176581 bp Ori: QFH62997.1 Feature: domain Description: Plasmid_stab_B Location: 175925-176132 bp Feature: domain Description: Plasmid_stab_B Location: 1 75925-1 761 32 bp Feature: domain Description: Plasmid_stab_B Location: 176237-176444 bp Feature: domain Description: Plasmid_stab_B Location: 1 76237-1 76444 bp Feature: gene Location: 176584-177555 bp Ori: QFH62998.1 Feature: domain Description: StbA Location: 176587-177532 bp Feature: domain Description: StbA Location: 1 76587-1 77532 bp Feature: gene Location: 177804-179288 bp Ori: QFH63023.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178206-178896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 78206-1 78896 bp Feature: gene Location: 179288-179539 bp Feature: gene Location: 179694-180119 bp Ori: QFH63000.1 Gene: umuD Feature: domain Description: PRK10276 Location: 179697-180105 bp Feature: domain Description: PRK1 0276 Location: 1 79697-1 801 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP042512.1 Serratia marcescens strain E28 chromosome, complete genome (5419694 bp)
Overview 1 RT 1: 73662-80025 bp Neighborhood of RT #1 [73662, 80036] DUF5375 Prim_Zn_Ribbon TOPRIM_primases COG3378 RVT-Retrons TIR_2 COG3943 YcbX Feature: gene Location: 73662-74000 bp Ori: QFH57889.1 Feature: domain Description: DUF5375 Location: 73683-73971 bp Feature: domain Description: DUF5375 Location: 73683-73971 bp Feature: gene Location: 74011-76344 bp Ori: QFH57890.1 Feature: domain Description: Prim_Zn_Ribbon Location: 74107-74215 bp Feature: domain Description: Prim_Zn_Ribbon Location: 74107-742 15 bp Feature: domain Description: TOPRIM_primases Location: 74650-74857 bp Feature: domain Description: TOPRIM_primases Location: 74650-74857 bp Feature: domain Description: COG3378 Location: 74890-76333 bp Feature: domain Description: COG3378 Location: 74890-76333 bp Feature: gene Location: 76910-78562 bp Ori: QFH57891.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77234-77831 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 772 34-77831 bp Feature: domain Description: TIR_2 Location: 78161-78461 bp Feature: domain Description: TIR_2 Location: 78161-78461 bp Feature: gene Location: 78877-79146 bp Ori: QFH57892.1 Feature: domain Description: COG3943 Location: 78916-79138 bp Feature: domain Description: COG3943 Location: 78916-79138 bp Feature: gene Location: 79272-80036 bp Ori: QFH57893.1 Feature: domain Description: YcbX Location: 79275-80025 bp Feature: domain Description: YcbX Location: 792 75-8002 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), TOPRIM_primases (cd01029), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), COG3943 (Uncharacterized conserved protein ), YcbX (COG3217)