myRT

myRT report for GCA_008931485.1_ASM893148v1

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Seq: CP042478.1 Citrobacter freundii strain C50 chromosome, complete genome (5095110 bp)
Overview 1 RT 1: 74136-78765 bp 2 RT 2: 247942-251807 bp 3 RT 3: 273187-276622 bp 4 RT 4: 818213-823688 bp 5 RT 5: 2361721-2365518 bp 6 RT 6: 3033072-3036530 bp 7 RT 7: 3038635-3042899 bp 8 RT 8: 3309486-3313043 bp 9 RT 9: 3594901-3602147 bp 10 RT 10: 3934258-3938910 bp 11 RT 11: 4378076-4383980 bp 12 RT 12: 4585192-4588840 bp 13 RT 13: 4850035-4854402 bp Neighborhood of RT #1 [74136, 78788] PRK09678 Psu RVT-Retrons PRK09692 Neighborhood of RT #2 [247942, 251854] InsE RVT-GII GIIM PHA02517 EAL Neighborhood of RT #3 [273187, 277016] Tn7_Tnp_TnsA_N PHA02517 RVT-GII GIIM InsE Neighborhood of RT #4 [818213, 823687] scrB_fam fruct_sucro_rep RVT-GII GIIM PHA02517 Neighborhood of RT #5 [2361721, 2365927] PRK10959 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #6 [3033072, 3036530] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #7 [3038635, 3042901] InsE RVT-GII GIIM PHA02517 PRK09651 Neighborhood of RT #8 [3309486, 3313437] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #9 [3594901, 3602149] TAT_signal MopB_3 PRK14990 TorD RVT-GII GIIM AhpF PRK10382 Neighborhood of RT #10 [3934258, 3939734] InsE RVT-GII GIIM PHA02517 LRV DUF2336 DUF2336 DUF2336 Neighborhood of RT #11 [4378076, 4383980] COG3183 COG3440 RVT-GII GIIM Beta_protein Neighborhood of RT #12 [4585192, 4589249] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #13 [4850035, 4854404] PRK11041 RVT-GII GIIM PRK11041 PRK10927 Feature: gene Location: 74136-74375 bp Ori: QFH73216.1 Feature: domain Description: PRK09678 Location: 74139-74319 bp Feature: domain Description: PRK09678 Location: 741 39-7431 9 bp Feature: gene Location: 74391-74957 bp Ori: QFH73217.1 Feature: domain Description: Psu Location: 74412-74952 bp Feature: domain Description: Psu Location: 7441 2-74952 bp Feature: gene Location: 75284-76792 bp Ori: QFH73218.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 75995-76550 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 75995-76550 bp Feature: gene Location: 76792-77436 bp Feature: gene Location: 77607-78788 bp Ori: QFH73220.1 Feature: domain Description: PRK09692 Location: 77616-78765 bp Feature: domain Description: PRK09692 Location: 7761 6-78765 bp Feature: gene Location: 247942-248630 bp Feature: domain Description: InsE Location: 247951-248236 bp Feature: domain Description: InsE Location: 247951 -248236 bp Feature: gene Location: 248599-248994 bp Feature: gene Location: 249303-250811 bp Ori: QFH77692.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249561-250293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249561 -250293 bp Feature: domain Description: GIIM Note: maturase Location: 250368-250566 bp Feature: domain Description: GIIM Note: maturase Location: 250368-250566 bp Feature: gene Location: 250892-251380 bp Feature: domain Description: PHA02517 Location: 250895-251360 bp Feature: domain Description: PHA0251 7 Location: 250895-251 360 bp Feature: gene Location: 251390-251854 bp Feature: domain Description: EAL Location: 251408-251807 bp Feature: domain Description: EAL Location: 251 408-251 807 bp Feature: gene Location: 273187-273585 bp Ori: QFH73391.1 Feature: domain Description: Tn7_Tnp_TnsA_N Location: 273412-273562 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 27341 2-273562 bp Feature: gene Location: 273578-274066 bp Feature: domain Description: PHA02517 Location: 273581-274046 bp Feature: domain Description: PHA0251 7 Location: 273581 -274046 bp Feature: gene Location: 274147-275655 bp Ori: QFH77696.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274405-275137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274405-2751 37 bp Feature: domain Description: GIIM Note: maturase Location: 275212-275410 bp Feature: domain Description: GIIM Note: maturase Location: 27521 2-27541 0 bp Feature: gene Location: 275964-276359 bp Feature: gene Location: 276328-277016 bp Feature: domain Description: InsE Location: 276337-276622 bp Feature: domain Description: InsE Location: 276337-276622 bp Feature: gene Location: 818213-819613 bp Ori: QFH73902.1 Feature: domain Description: scrB_fam Location: 818258-819530 bp Feature: domain Description: scrB_fam Location: 81 8258-81 9530 bp Feature: gene Location: 819643-820647 bp Ori: QFH73903.1 Feature: domain Description: fruct_sucro_rep Location: 819664-820642 bp Feature: domain Description: fruct_sucro_rep Location: 81 9664-820642 bp Feature: gene Location: 821081-822604 bp Ori: QFH73904.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 821354-822086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 821 354-822086 bp Feature: domain Description: GIIM Note: maturase Location: 822161-822383 bp Feature: domain Description: GIIM Note: maturase Location: 8221 61 -822383 bp Feature: gene Location: 822898-823260 bp Feature: gene Location: 823262-823687 bp Feature: domain Description: PHA02517 Location: 823352-823688 bp Feature: domain Description: PHA0251 7 Location: 823352-823688 bp Feature: gene Location: 2361721-2362374 bp Ori: QFH75297.1 Gene: ompW Feature: domain Description: PRK10959 Location: 2361724-2362372 bp Feature: domain Description: PRK1 0959 Location: 2361 724-2362372 bp Feature: gene Location: 2362510-2362986 bp Feature: domain Description: PHA02517 Location: 2362513-2362978 bp Feature: domain Description: PHA0251 7 Location: 236251 3-2362978 bp Feature: gene Location: 2363067-2364575 bp Ori: QFH77769.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2363325-2364057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2363325-2364057 bp Feature: domain Description: GIIM Note: maturase Location: 2364132-2364330 bp Feature: domain Description: GIIM Note: maturase Location: 23641 32-2364330 bp Feature: gene Location: 2364884-2365294 bp Feature: gene Location: 2365248-2365927 bp Feature: domain Description: InsE Location: 2365260-2365518 bp Feature: domain Description: InsE Location: 2365260-236551 8 bp Feature: gene Location: 3033072-3033759 bp Feature: domain Description: InsE Location: 3033084-3033348 bp Feature: domain Description: InsE Location: 3033084-3033348 bp Feature: gene Location: 3033752-3034123 bp Feature: gene Location: 3034417-3035940 bp Ori: QFH75890.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3034690-3035422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3034690-3035422 bp Feature: domain Description: GIIM Note: maturase Location: 3035497-3035719 bp Feature: domain Description: GIIM Note: maturase Location: 3035497-303571 9 bp Feature: gene Location: 3036021-3036477 bp Feature: domain Description: PHA02517 Location: 3036024-3036120 bp Feature: domain Description: PHA0251 7 Location: 3036024-30361 20 bp Feature: gene Location: 3036429-3036530 bp Feature: gene Location: 3038635-3039323 bp Feature: domain Description: InsE Location: 3038644-3038929 bp Feature: domain Description: InsE Location: 3038644-3038929 bp Feature: gene Location: 3039292-3039687 bp Feature: gene Location: 3039996-3041504 bp Ori: QFH77808.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3040254-3040986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3040254-3040986 bp Feature: domain Description: GIIM Note: maturase Location: 3041061-3041259 bp Feature: domain Description: GIIM Note: maturase Location: 3041 061 -3041 259 bp Feature: gene Location: 3041585-3042073 bp Feature: domain Description: PHA02517 Location: 3041588-3042053 bp Feature: domain Description: PHA0251 7 Location: 3041 588-3042053 bp Feature: gene Location: 3042380-3042901 bp Ori: QFH75893.1 Feature: domain Description: PRK09651 Location: 3042386-3042899 bp Feature: domain Description: PRK09651 Location: 3042386-3042899 bp Feature: gene Location: 3309486-3309728 bp Feature: gene Location: 3309999-3310487 bp Feature: domain Description: PHA02517 Location: 3310002-3310467 bp Feature: domain Description: PHA0251 7 Location: 331 0002-331 0467 bp Feature: gene Location: 3310568-3312076 bp Ori: QFH77817.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3310826-3311558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 0826-331 1 558 bp Feature: domain Description: GIIM Note: maturase Location: 3311633-3311831 bp Feature: domain Description: GIIM Note: maturase Location: 331 1 633-331 1 831 bp Feature: gene Location: 3312385-3312780 bp Feature: gene Location: 3312749-3313437 bp Feature: domain Description: InsE Location: 3312758-3313043 bp Feature: domain Description: InsE Location: 331 2758-331 3043 bp Feature: gene Location: 3594901-3597171 bp Ori: QFH76396.1 Feature: domain Description: TAT_signal Location: 3594925-3594991 bp Feature: domain Description: TAT_signal Location: 3594925-3594991 bp Feature: domain Description: MopB_3 Location: 3595060-3596761 bp Feature: domain Description: MopB_3 Location: 3595060-3596761 bp Feature: domain Description: PRK14990 Location: 3596764-3597031 bp Feature: domain Description: PRK1 4990 Location: 3596764-3597031 bp Feature: gene Location: 3597168-3597722 bp Ori: QFH76397.1 Feature: domain Description: TorD Location: 3597177-3597708 bp Feature: domain Description: TorD Location: 35971 77-3597708 bp Feature: gene Location: 3597956-3599377 bp Ori: QFH76398.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3598313-3598928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 359831 3-3598928 bp Feature: domain Description: GIIM Note: maturase Location: 3598982-3599210 bp Feature: domain Description: GIIM Note: maturase Location: 3598982-359921 0 bp Feature: gene Location: 3599866-3601431 bp Ori: QFH76399.1 Gene: ahpF Feature: domain Description: AhpF Location: 3599869-3601423 bp Feature: domain Description: AhpF Location: 3599869-3601 423 bp Feature: gene Location: 3601586-3602149 bp Ori: QFH76400.1 Gene: ahpC Feature: domain Description: PRK10382 Location: 3601589-3602147 bp Feature: domain Description: PRK1 0382 Location: 3601 589-36021 47 bp Feature: gene Location: 3934258-3934937 bp Feature: domain Description: InsE Location: 3934270-3934528 bp Feature: domain Description: InsE Location: 3934270-3934528 bp Feature: gene Location: 3934891-3935301 bp Feature: gene Location: 3935610-3937118 bp Ori: QFH77844.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3935868-3936600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3935868-3936600 bp Feature: domain Description: GIIM Note: maturase Location: 3936675-3936873 bp Feature: domain Description: GIIM Note: maturase Location: 3936675-3936873 bp Feature: gene Location: 3937199-3937675 bp Feature: domain Description: PHA02517 Location: 3937202-3937667 bp Feature: domain Description: PHA0251 7 Location: 3937202-3937667 bp Feature: gene Location: 3937698-3939734 bp Feature: domain Description: LRV Location: 3937701-3937764 bp Feature: domain Description: LRV Location: 3937701 -3937764 bp Feature: domain Description: DUF2336 Location: 3937791-3938166 bp Feature: domain Description: DUF2336 Location: 3937791 -39381 66 bp Feature: domain Description: DUF2336 Location: 3938223-3938619 bp Feature: domain Description: DUF2336 Location: 3938223-393861 9 bp Feature: domain Description: DUF2336 Location: 3938676-3938910 bp Feature: domain Description: DUF2336 Location: 3938676-393891 0 bp Feature: gene Location: 4378076-4378711 bp Ori: QFH77063.1 Feature: domain Description: COG3183 Location: 4378361-4378706 bp Feature: domain Description: COG31 83 Location: 4378361 -4378706 bp Feature: gene Location: 4378852-4379724 bp Ori: QFH77064.1 Feature: domain Description: COG3440 Location: 4378861-4379716 bp Feature: domain Description: COG3440 Location: 4378861 -437971 6 bp Feature: gene Location: 4380132-4381553 bp Ori: QFH77065.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4380489-4381104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4380489-4381 1 04 bp Feature: domain Description: GIIM Note: maturase Location: 4381158-4381386 bp Feature: domain Description: GIIM Note: maturase Location: 4381 1 58-4381 386 bp Feature: gene Location: 4382221-4383132 bp Ori: QFH77066.1 Feature: domain Description: Beta_protein Location: 4382227-4382506 bp Feature: domain Description: Beta_protein Location: 4382227-4382506 bp Feature: gene Location: 4383114-4383980 bp Feature: gene Location: 4585192-4585623 bp Feature: gene Location: 4585832-4586308 bp Feature: domain Description: PHA02517 Location: 4585835-4586300 bp Feature: domain Description: PHA0251 7 Location: 4585835-4586300 bp Feature: gene Location: 4586389-4587897 bp Ori: QFH77863.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4586647-4587379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4586647-4587379 bp Feature: domain Description: GIIM Note: maturase Location: 4587454-4587652 bp Feature: domain Description: GIIM Note: maturase Location: 4587454-4587652 bp Feature: gene Location: 4588206-4588616 bp Feature: gene Location: 4588570-4589249 bp Feature: domain Description: InsE Location: 4588582-4588840 bp Feature: domain Description: InsE Location: 4588582-4588840 bp Feature: gene Location: 4850035-4850721 bp Gene: cytR Feature: domain Description: PRK11041 Location: 4850134-4850722 bp Feature: domain Description: PRK1 1 041 Location: 48501 34-4850722 bp Feature: gene Location: 4850714-4851085 bp Feature: gene Location: 4851394-4852902 bp Ori: QFH77872.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4851652-4852384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4851 652-4852384 bp Feature: domain Description: GIIM Note: maturase Location: 4852459-4852657 bp Feature: domain Description: GIIM Note: maturase Location: 4852459-4852657 bp Feature: gene Location: 4852992-4853330 bp Feature: domain Description: PRK11041 Location: 4852995-4853325 bp Feature: domain Description: PRK1 1 041 Location: 4852995-4853325 bp Feature: gene Location: 4853424-4854404 bp Ori: QFH77466.1 Gene: ftsN Feature: domain Description: PRK10927 Location: 4853427-4854402 bp Feature: domain Description: PRK1 0927 Location: 4853427-4854402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455), RVT-Retrons, PRK09692 (Integrase; provisional), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), EAL (smart00052), Tn7_Tnp_TnsA_N (pfam08722)
scrB_fam (TIGR01322), fruct_sucro_rep (TIGR02417), PRK10959 (outer membrane protein W; Provisional), PRK09651 (RNA polymerase sigma factor FecI; Provisional), TAT_signal (pfam10518), MopB_3 (cd02766), PRK14990 (anaerobic dimethyl sulfoxide reductase subunit A; Provisional), TorD (COG3381), AhpF (TIGR03140), PRK10382 (alkyl hydroperoxide reductase subunit C; Provisional)
LRV (pfam01816), DUF2336 (pfam10098), COG3183 (Predicted restriction endonuclease, HNH family ), COG3440 (Predicted restriction endonuclease ), Beta_protein (pfam14350), PRK11041 (DNA-binding transcriptional regulator CytR; Provisional), PRK10927 (cell division protein FtsN)

Seq: CP042479.1 Citrobacter freundii strain C50 plasmid pC50_001, complete sequence (243455 bp)
Overview 1 RT 1: 222507-228086 bp Neighborhood of RT #1 [222507, 228103] PAAR_CT_2 DUF2235 DUF2235 RVT-GII GIIM PRK02951 Feature: gene Location: 222507-224147 bp Ori: QFH78103.1 Feature: domain Description: PAAR_CT_2 Location: 222513-222747 bp Feature: domain Description: PAAR_CT_2 Location: 2 2 2 513-2 2 2 747 bp Feature: domain Description: DUF2235 Location: 222939-223329 bp Feature: domain Description: DUF2 2 35 Location: 2 2 2 939-2 2 332 9 bp Feature: domain Description: DUF2235 Location: 223359-223620 bp Feature: domain Description: DUF2 2 35 Location: 2 2 3359-2 2 362 0 bp Feature: gene Location: 224150-224446 bp Feature: gene Location: 224536-225957 bp Ori: QFH78105.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224893-225508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 4893-2 2 5508 bp Feature: domain Description: GIIM Note: maturase Location: 225562-225790 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 5562 -2 2 5790 bp Feature: gene Location: 226466-226765 bp Feature: gene Location: 227228-228103 bp Ori: QFH78107.1 Feature: domain Description: PRK02951 Location: 227234-228086 bp Feature: domain Description: PRK02 951 Location: 2 2 72 34-2 2 8086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_CT_2 (cd14744), DUF2235 (pfam09994), RVT-GII, GIIM (pfam08388), PRK02951 (DNA replication terminus site-binding protein; Provisional)