myRT

myRT report for GCA_008931505.1_ASM893150v1

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Seq: CP042518.1 Citrobacter freundii strain E33 plasmid pE33_001, complete sequence (243455 bp)
Overview 1 RT 1: 222507-228086 bp Neighborhood of RT #1 [222507, 228103] PAAR_CT_2 DUF2235 DUF2235 RVT-GII GIIM PRK02951 Feature: gene Location: 222507-224147 bp Ori: QFH83194.1 Feature: domain Description: PAAR_CT_2 Location: 222513-222747 bp Feature: domain Description: PAAR_CT_2 Location: 22251 3-222747 bp Feature: domain Description: DUF2235 Location: 222939-223329 bp Feature: domain Description: DUF2235 Location: 222939-223329 bp Feature: domain Description: DUF2235 Location: 223359-223620 bp Feature: domain Description: DUF2235 Location: 223359-223620 bp Feature: gene Location: 224150-224446 bp Feature: gene Location: 224536-225957 bp Ori: QFH83196.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224893-225508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224893-225508 bp Feature: domain Description: GIIM Note: maturase Location: 225562-225790 bp Feature: domain Description: GIIM Note: maturase Location: 225562-225790 bp Feature: gene Location: 226466-226765 bp Feature: gene Location: 227228-228103 bp Ori: QFH83198.1 Feature: domain Description: PRK02951 Location: 227234-228086 bp Feature: domain Description: PRK02951 Location: 227234-228086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_CT_2 (cd14744), DUF2235 (pfam09994), RVT-GII, GIIM (pfam08388), PRK02951 (DNA replication terminus site-binding protein; Provisional)

Seq: CP042517.1 Citrobacter freundii strain E33 chromosome, complete genome (5022915 bp)
Overview 1 RT 1: 1498582-1502379 bp 2 RT 2: 1893817-1897122 bp 3 RT 3: 2171048-2174506 bp 4 RT 4: 2176611-2180875 bp 5 RT 5: 2447462-2451019 bp 6 RT 6: 2735187-2742433 bp 7 RT 7: 3075699-3080351 bp 8 RT 8: 3724713-3728361 bp 9 RT 9: 4253456-4257262 bp 10 RT 10: 4278618-4282136 bp 11 RT 11: 4451684-4456280 bp Neighborhood of RT #1 [1498582, 1502788] PRK10959 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [1893817, 1897531] YafY PHA02517 RVT-GII GIIM InsE Neighborhood of RT #3 [2171048, 2174506] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #4 [2176611, 2180877] InsE RVT-GII GIIM PHA02517 PRK09651 Neighborhood of RT #5 [2447462, 2451413] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #6 [2735187, 2742435] TAT_signal MopB_3 PRK14990 TorD RVT-GII GIIM AhpF PRK10382 Neighborhood of RT #7 [3075699, 3081175] InsE RVT-GII GIIM PHA02517 LRV DUF2336 DUF2336 DUF2336 Neighborhood of RT #8 [3724713, 3728770] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #9 [4253456, 4257285] InsE RVT-GII GIIM PHA02517 Tn7_Tnp_TnsA_N Neighborhood of RT #10 [4278618, 4282530] EAL PHA02517 RVT-GII GIIM InsE Neighborhood of RT #11 [4451684, 4456336] PRK09692 RVT-Retrons Psu PRK09678 Feature: gene Location: 1498582-1499235 bp Ori: QFH79671.1 Gene: ompW Feature: domain Description: PRK10959 Location: 1498585-1499233 bp Feature: domain Description: PRK10959 Location: 1498585-14992 33 bp Feature: gene Location: 1499371-1499847 bp Feature: domain Description: PHA02517 Location: 1499374-1499839 bp Feature: domain Description: PHA02 517 Location: 1499374-1499839 bp Feature: gene Location: 1499928-1501436 bp Ori: QFH82826.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1500186-1500918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1500186-1500918 bp Feature: domain Description: GIIM Note: maturase Location: 1500993-1501191 bp Feature: domain Description: GIIM Note: maturase Location: 1500993-1501191 bp Feature: gene Location: 1501745-1502155 bp Feature: gene Location: 1502109-1502788 bp Feature: domain Description: InsE Location: 1502121-1502379 bp Feature: domain Description: InsE Location: 1502 12 1-1502 379 bp Feature: gene Location: 1893817-1894095 bp Feature: domain Description: YafY Location: 1893820-1894063 bp Feature: domain Description: YafY Location: 189382 0-1894063 bp Feature: gene Location: 1894114-1894590 bp Feature: domain Description: PHA02517 Location: 1894117-1894582 bp Feature: domain Description: PHA02 517 Location: 1894117-1894582 bp Feature: gene Location: 1894671-1896179 bp Ori: QFH82849.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1894929-1895661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189492 9-1895661 bp Feature: domain Description: GIIM Note: maturase Location: 1895736-1895934 bp Feature: domain Description: GIIM Note: maturase Location: 1895736-1895934 bp Feature: gene Location: 1896488-1896898 bp Feature: gene Location: 1896852-1897531 bp Feature: domain Description: InsE Location: 1896864-1897122 bp Feature: domain Description: InsE Location: 1896864-189712 2 bp Feature: gene Location: 2171048-2171735 bp Feature: domain Description: InsE Location: 2171060-2171324 bp Feature: domain Description: InsE Location: 2 171060-2 17132 4 bp Feature: gene Location: 2171728-2172099 bp Feature: gene Location: 2172393-2173916 bp Ori: QFH80263.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2172666-2173398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 172 666-2 173398 bp Feature: domain Description: GIIM Note: maturase Location: 2173473-2173695 bp Feature: domain Description: GIIM Note: maturase Location: 2 173473-2 173695 bp Feature: gene Location: 2173997-2174453 bp Feature: domain Description: PHA02517 Location: 2174000-2174096 bp Feature: domain Description: PHA02 517 Location: 2 174000-2 174096 bp Feature: gene Location: 2174405-2174506 bp Feature: gene Location: 2176611-2177299 bp Feature: domain Description: InsE Location: 2176620-2176905 bp Feature: domain Description: InsE Location: 2 17662 0-2 176905 bp Feature: gene Location: 2177268-2177663 bp Feature: gene Location: 2177972-2179480 bp Ori: QFH82866.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2178230-2178962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1782 30-2 178962 bp Feature: domain Description: GIIM Note: maturase Location: 2179037-2179235 bp Feature: domain Description: GIIM Note: maturase Location: 2 179037-2 1792 35 bp Feature: gene Location: 2179561-2180049 bp Feature: domain Description: PHA02517 Location: 2179564-2180029 bp Feature: domain Description: PHA02 517 Location: 2 179564-2 18002 9 bp Feature: gene Location: 2180356-2180877 bp Ori: QFH80266.1 Feature: domain Description: PRK09651 Location: 2180362-2180875 bp Feature: domain Description: PRK09651 Location: 2 180362 -2 180875 bp Feature: gene Location: 2447462-2447704 bp Feature: gene Location: 2447975-2448463 bp Feature: domain Description: PHA02517 Location: 2447978-2448443 bp Feature: domain Description: PHA02 517 Location: 2 447978-2 448443 bp Feature: gene Location: 2448544-2450052 bp Ori: QFH82876.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2448802-2449534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 448802 -2 449534 bp Feature: domain Description: GIIM Note: maturase Location: 2449609-2449807 bp Feature: domain Description: GIIM Note: maturase Location: 2 449609-2 449807 bp Feature: gene Location: 2450361-2450756 bp Feature: gene Location: 2450725-2451413 bp Feature: domain Description: InsE Location: 2450734-2451019 bp Feature: domain Description: InsE Location: 2 450734-2 451019 bp Feature: gene Location: 2735187-2737457 bp Ori: QFH80770.1 Feature: domain Description: TAT_signal Location: 2735211-2735277 bp Feature: domain Description: TAT_signal Location: 2 7352 11-2 7352 77 bp Feature: domain Description: MopB_3 Location: 2735346-2737047 bp Feature: domain Description: MopB_3 Location: 2 735346-2 737047 bp Feature: domain Description: PRK14990 Location: 2737050-2737317 bp Feature: domain Description: PRK14990 Location: 2 737050-2 737317 bp Feature: gene Location: 2737454-2738008 bp Ori: QFH80771.1 Feature: domain Description: TorD Location: 2737463-2737994 bp Feature: domain Description: TorD Location: 2 737463-2 737994 bp Feature: gene Location: 2738242-2739663 bp Ori: QFH80772.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2738599-2739214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 738599-2 7392 14 bp Feature: domain Description: GIIM Note: maturase Location: 2739268-2739496 bp Feature: domain Description: GIIM Note: maturase Location: 2 7392 68-2 739496 bp Feature: gene Location: 2740152-2741717 bp Ori: QFH80773.1 Gene: ahpF Feature: domain Description: AhpF Location: 2740155-2741709 bp Feature: domain Description: AhpF Location: 2 740155-2 741709 bp Feature: gene Location: 2741872-2742435 bp Ori: QFH80774.1 Gene: ahpC Feature: domain Description: PRK10382 Location: 2741875-2742433 bp Feature: domain Description: PRK10382 Location: 2 741875-2 742 433 bp Feature: gene Location: 3075699-3076378 bp Feature: domain Description: InsE Location: 3075711-3075969 bp Feature: domain Description: InsE Location: 3075711-3075969 bp Feature: gene Location: 3076332-3076742 bp Feature: gene Location: 3077051-3078559 bp Ori: QFH82902.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3077309-3078041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3077309-3078041 bp Feature: domain Description: GIIM Note: maturase Location: 3078116-3078314 bp Feature: domain Description: GIIM Note: maturase Location: 3078116-3078314 bp Feature: gene Location: 3078640-3079116 bp Feature: domain Description: PHA02517 Location: 3078643-3079108 bp Feature: domain Description: PHA02 517 Location: 3078643-3079108 bp Feature: gene Location: 3079139-3081175 bp Feature: domain Description: LRV Location: 3079142-3079205 bp Feature: domain Description: LRV Location: 3079142 -30792 05 bp Feature: domain Description: DUF2336 Location: 3079232-3079607 bp Feature: domain Description: DUF2 336 Location: 30792 32 -3079607 bp Feature: domain Description: DUF2336 Location: 3079664-3080060 bp Feature: domain Description: DUF2 336 Location: 3079664-3080060 bp Feature: domain Description: DUF2336 Location: 3080117-3080351 bp Feature: domain Description: DUF2 336 Location: 3080117-3080351 bp Feature: gene Location: 3724713-3725144 bp Feature: gene Location: 3725353-3725829 bp Feature: domain Description: PHA02517 Location: 3725356-3725821 bp Feature: domain Description: PHA02 517 Location: 372 5356-372 582 1 bp Feature: gene Location: 3725910-3727418 bp Ori: QFH82922.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3726168-3726900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372 6168-372 6900 bp Feature: domain Description: GIIM Note: maturase Location: 3726975-3727173 bp Feature: domain Description: GIIM Note: maturase Location: 372 6975-372 7173 bp Feature: gene Location: 3727727-3728137 bp Feature: gene Location: 3728091-3728770 bp Feature: domain Description: InsE Location: 3728103-3728361 bp Feature: domain Description: InsE Location: 372 8103-372 8361 bp Feature: gene Location: 4253456-4254144 bp Feature: domain Description: InsE Location: 4253465-4253750 bp Feature: domain Description: InsE Location: 42 53465-42 53750 bp Feature: gene Location: 4254113-4254508 bp Feature: gene Location: 4254817-4256325 bp Ori: QFH82940.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4255075-4255807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 55075-42 55807 bp Feature: domain Description: GIIM Note: maturase Location: 4255882-4256080 bp Feature: domain Description: GIIM Note: maturase Location: 42 55882 -42 56080 bp Feature: gene Location: 4256406-4256894 bp Feature: domain Description: PHA02517 Location: 4256409-4256874 bp Feature: domain Description: PHA02 517 Location: 42 56409-42 56874 bp Feature: gene Location: 4256887-4257285 bp Ori: QFH82122.1 Feature: domain Description: Tn7_Tnp_TnsA_N Location: 4257112-4257262 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 42 57112 -42 572 62 bp Feature: gene Location: 4278618-4279082 bp Feature: domain Description: EAL Location: 4278636-4279035 bp Feature: domain Description: EAL Location: 42 78636-42 79035 bp Feature: gene Location: 4279092-4279580 bp Feature: domain Description: PHA02517 Location: 4279095-4279560 bp Feature: domain Description: PHA02 517 Location: 42 79095-42 79560 bp Feature: gene Location: 4279661-4281169 bp Ori: QFH82943.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4279919-4280651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 79919-42 80651 bp Feature: domain Description: GIIM Note: maturase Location: 4280726-4280924 bp Feature: domain Description: GIIM Note: maturase Location: 42 8072 6-42 8092 4 bp Feature: gene Location: 4281478-4281873 bp Feature: gene Location: 4281842-4282530 bp Feature: domain Description: InsE Location: 4281851-4282136 bp Feature: domain Description: InsE Location: 42 81851-42 82 136 bp Feature: gene Location: 4451684-4452865 bp Ori: QFH82293.1 Feature: domain Description: PRK09692 Location: 4451693-4452842 bp Feature: domain Description: PRK09692 Location: 4451693-4452 842 bp Feature: gene Location: 4453036-4453680 bp Feature: gene Location: 4453680-4455188 bp Ori: QFH82295.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4454391-4454946 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4454391-4454946 bp Feature: gene Location: 4455515-4456081 bp Ori: QFH82296.1 Feature: domain Description: Psu Location: 4455536-4456076 bp Feature: domain Description: Psu Location: 4455536-4456076 bp Feature: gene Location: 4456097-4456336 bp Ori: QFH82297.1 Feature: domain Description: PRK09678 Location: 4456100-4456280 bp Feature: domain Description: PRK09678 Location: 4456100-44562 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10959 (outer membrane protein W; Provisional), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), YafY (COG2378), PRK09651 (RNA polymerase sigma factor FecI; Provisional), TAT_signal (pfam10518), MopB_3 (cd02766), PRK14990 (anaerobic dimethyl sulfoxide reductase subunit A; Provisional)
TorD (COG3381), AhpF (TIGR03140), PRK10382 (alkyl hydroperoxide reductase subunit C; Provisional), LRV (pfam01816), DUF2336 (pfam10098), Tn7_Tnp_TnsA_N (pfam08722), EAL (smart00052), PRK09692 (Integrase; provisional), RVT-Retrons, Psu (pfam07455)
PRK09678 (DNA-binding transcriptional regulator; Provisional)