myRT

myRT report for GCA_008931625.1_ASM893162v1

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Seq: CP042524.1 Citrobacter freundii strain E11 chromosome, complete genome (5088693 bp)
Overview 1 RT 1: 2708299-2713596 bp 2 RT 2: 4402572-4406502 bp Neighborhood of RT #1 [2708299, 2713607] emrE RVT-UG12 HTH_38 Tra8 Neighborhood of RT #2 [4402572, 4406525] InsE RVT-GII GIIM PHA02517 HTH_XRE Feature: gene Location: 2708299-2708892 bp Feature: gene Location: 2709300-2709632 bp Ori: QFI11417.1 Feature: domain Description: emrE Location: 2709303-2709630 bp Feature: domain Description: emrE Location: 2709303-2709630 bp Feature: gene Location: 2709877-2711454 bp Ori: QFI11418.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2710264-2710693 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 271 0264-271 0693 bp Feature: gene Location: 2711445-2712152 bp Feature: gene Location: 2712447-2713607 bp Ori: QFI11420.1 Feature: domain Description: HTH_38 Location: 2712477-2712573 bp Feature: domain Description: HTH_38 Location: 271 2477-271 2573 bp Feature: domain Description: Tra8 Location: 2712633-2713596 bp Feature: domain Description: Tra8 Location: 271 2633-271 3596 bp Feature: gene Location: 4402572-4403257 bp Feature: domain Description: InsE Location: 4402584-4402848 bp Feature: domain Description: InsE Location: 4402584-4402848 bp Feature: gene Location: 4403250-4403591 bp Feature: gene Location: 4403915-4405438 bp Ori: QFI12938.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4404188-4404920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44041 88-4404920 bp Feature: domain Description: GIIM Note: maturase Location: 4404995-4405193 bp Feature: domain Description: GIIM Note: maturase Location: 4404995-44051 93 bp Feature: gene Location: 4405519-4405977 bp Feature: domain Description: PHA02517 Location: 4405522-4405969 bp Feature: domain Description: PHA0251 7 Location: 4405522-4405969 bp Feature: gene Location: 4406355-4406525 bp Ori: QFI12939.1 Feature: domain Description: HTH_XRE Location: 4406364-4406502 bp Feature: domain Description: HTH_XRE Location: 4406364-4406502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT emrE (PRK09541), RVT-UG12, HTH_38 (pfam13936), Tra8 (COG2826), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_XRE (smart00530)