myRT

myRT report for GCA_009002475.1_ASM900247v1

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Seq: AP019860.1 Planctomycetes bacterium SRT547 DNA, complete genome (9503417 bp)
Overview 1 RT 1: 2363577-2370256 bp 2 RT 2: 4022028-4033866 bp 3 RT 3: 4364869-4370335 bp 4 RT 4: 5274750-5281462 bp 5 RT 5: 7737825-7745454 bp Neighborhood of RT #1 [2363577, 2370396] RMtype1_S_TRD-CR_like RVT-GII GIIM COG2192 PhoE His_Phos_1 Neighborhood of RT #2 [4022028, 4033883] SGNH_hydrolase_like_4 AlgX_N HTH_Hin_like HTH_Hin_like RVT-Retrons SWIM KOG0318 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Neighborhood of RT #3 [4364869, 4371801] polynuc_phos rpsO RVT-Retrons moaB_proteo PKD Neighborhood of RT #4 [5274750, 5281500] FHA STKc_PknB_like DDE_Tnp_1 RVT-Retrons SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 STKc_PknB_like Neighborhood of RT #5 [7737825, 7745654] RND_mfp RND_mfp CusA RVT-GII FHA Feature: gene Location: 2363577-2364161 bp Ori: BBM83335.1 Feature: domain Description: RMtype1_S_TRD-CR_like Location: 2363592-2364123 bp Feature: domain Description: RMtype1 _S_TRD-CR_like Location: 2363592-23641 23 bp Feature: gene Location: 2364215-2365642 bp Feature: gene Location: 2366169-2367554 bp Ori: BBM83337.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2366508-2367129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2366508-23671 29 bp Feature: domain Description: GIIM Note: maturase Location: 2367180-2367402 bp Feature: domain Description: GIIM Note: maturase Location: 23671 80-2367402 bp Feature: gene Location: 2368217-2369860 bp Ori: BBM83338.1 Feature: domain Description: COG2192 Location: 2368280-2369849 bp Feature: domain Description: COG21 92 Location: 2368280-2369849 bp Feature: gene Location: 2369863-2370396 bp Ori: BBM83339.1 Feature: domain Description: PhoE Location: 2369875-2370121 bp Feature: domain Description: PhoE Location: 2369875-23701 21 bp Feature: domain Description: His_Phos_1 Location: 2370121-2370256 bp Feature: domain Description: His_Phos_1 Location: 23701 21 -2370256 bp Feature: gene Location: 4022028-4023407 bp Ori: BBM84580.1 Feature: domain Description: SGNH_hydrolase_like_4 Location: 4022532-4022634 bp Feature: domain Description: SGNH_hydrolase_like_4 Location: 4022532-4022634 bp Feature: domain Description: AlgX_N Location: 4023261-4023399 bp Feature: domain Description: AlgX_N Location: 4023261 -4023399 bp Feature: gene Location: 4023595-4024152 bp Ori: BBM84581.1 Feature: domain Description: HTH_Hin_like Location: 4023610-4023667 bp Feature: domain Description: HTH_Hin_like Location: 402361 0-4023667 bp Feature: domain Description: HTH_Hin_like Location: 4023955-4024009 bp Feature: domain Description: HTH_Hin_like Location: 4023955-4024009 bp Feature: gene Location: 4024545-4025834 bp Ori: BBM84582.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4024986-4025610 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4024986-402561 0 bp Feature: gene Location: 4025838-4027667 bp Ori: BBM84583.1 Feature: domain Description: SWIM Location: 4027311-4027398 bp Feature: domain Description: SWIM Location: 402731 1 -4027398 bp Feature: gene Location: 4027680-4033883 bp Ori: BBM84584.1 Feature: domain Description: KOG0318 Location: 4027878-4028268 bp Feature: domain Description: KOG031 8 Location: 4027878-4028268 bp Feature: domain Description: HEAT_2 Location: 4028730-4028859 bp Feature: domain Description: HEAT_2 Location: 4028730-4028859 bp Feature: domain Description: HEAT_2 Location: 4028913-4029135 bp Feature: domain Description: HEAT_2 Location: 402891 3-40291 35 bp Feature: domain Description: HEAT_2 Location: 4029408-4029648 bp Feature: domain Description: HEAT_2 Location: 4029408-4029648 bp Feature: domain Description: HEAT_2 Location: 4029891-4030134 bp Feature: domain Description: HEAT_2 Location: 4029891 -40301 34 bp Feature: domain Description: HEAT_2 Location: 4030245-4030371 bp Feature: domain Description: HEAT_2 Location: 4030245-4030371 bp Feature: domain Description: HEAT_2 Location: 4030383-4030614 bp Feature: domain Description: HEAT_2 Location: 4030383-403061 4 bp Feature: domain Description: HEAT Location: 4030755-4031067 bp Feature: domain Description: HEAT Location: 4030755-4031 067 bp Feature: domain Description: HEAT Location: 4031247-4031538 bp Feature: domain Description: HEAT Location: 4031 247-4031 538 bp Feature: domain Description: HEAT_2 Location: 4031700-4031919 bp Feature: domain Description: HEAT_2 Location: 4031 700-4031 91 9 bp Feature: domain Description: HEAT_2 Location: 4032207-4032396 bp Feature: domain Description: HEAT_2 Location: 4032207-4032396 bp Feature: domain Description: HEAT_2 Location: 4032429-4032612 bp Feature: domain Description: HEAT_2 Location: 4032429-403261 2 bp Feature: domain Description: HEAT_2 Location: 4032666-4032879 bp Feature: domain Description: HEAT_2 Location: 4032666-4032879 bp Feature: domain Description: HEAT_2 Location: 4033692-4033866 bp Feature: domain Description: HEAT_2 Location: 4033692-4033866 bp Feature: gene Location: 4364869-4367118 bp Ori: BBM84845.1 Feature: domain Description: polynuc_phos Location: 4364896-4366951 bp Feature: domain Description: polynuc_phos Location: 4364896-4366951 bp Feature: gene Location: 4367228-4367497 bp Ori: BBM84846.1 Feature: domain Description: rpsO Location: 4367231-4367495 bp Feature: domain Description: rpsO Location: 4367231 -4367495 bp Feature: gene Location: 4367522-4368733 bp Ori: BBM84847.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4367837-4368446 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4367837-4368446 bp Feature: gene Location: 4369361-4369873 bp Ori: BBM84848.1 Feature: domain Description: moaB_proteo Location: 4369376-4369853 bp Feature: domain Description: moaB_proteo Location: 4369376-4369853 bp Feature: gene Location: 4370062-4371801 bp Ori: BBM84849.1 Feature: domain Description: PKD Location: 4370170-4370335 bp Feature: domain Description: PKD Location: 43701 70-4370335 bp Feature: gene Location: 5274750-5276048 bp Ori: BBM85505.1 Feature: domain Description: FHA Location: 5274765-5275017 bp Feature: domain Description: FHA Location: 5274765-527501 7 bp Feature: domain Description: STKc_PknB_like Location: 5275191-5275875 bp Feature: domain Description: STKc_PknB_like Location: 52751 91 -5275875 bp Feature: gene Location: 5276109-5277350 bp Ori: BBM85506.1 Feature: domain Description: DDE_Tnp_1 Location: 5276385-5277051 bp Feature: domain Description: DDE_Tnp_1 Location: 5276385-5277051 bp Feature: gene Location: 5277542-5278447 bp Ori: BBM85507.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5277719-5278244 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 527771 9-5278244 bp Feature: gene Location: 5278434-5280044 bp Ori: BBM85508.1 Feature: domain Description: SPFH_eoslipins_u2 Location: 5278455-5278881 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 5278455-5278881 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 5278908-5279331 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 5278908-5279331 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 5279352-5279979 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 5279352-5279979 bp Feature: gene Location: 5280565-5281500 bp Ori: BBM85509.1 Feature: domain Description: STKc_PknB_like Location: 5280697-5281462 bp Feature: domain Description: STKc_PknB_like Location: 5280697-5281 462 bp Feature: gene Location: 7737825-7739468 bp Ori: BBM87076.1 Feature: domain Description: RND_mfp Location: 7738110-7738263 bp Feature: domain Description: RND_mfp Location: 77381 1 0-7738263 bp Feature: domain Description: RND_mfp Location: 7738857-7739409 bp Feature: domain Description: RND_mfp Location: 7738857-7739409 bp Feature: gene Location: 7739484-7742672 bp Ori: BBM87077.1 Feature: domain Description: CusA Location: 7739487-7742583 bp Feature: domain Description: CusA Location: 7739487-7742583 bp Feature: gene Location: 7743170-7744504 bp Ori: BBM87078.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7743449-7744136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7743449-77441 36 bp Feature: gene Location: 7744630-7745100 bp Feature: gene Location: 7745160-7745654 bp Ori: BBM87080.1 Feature: domain Description: FHA Location: 7745208-7745454 bp Feature: domain Description: FHA Location: 7745208-7745454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_TRD-CR_like (cl38903), RVT-GII, GIIM (pfam08388), COG2192 (Predicted carbamoyl transferase, NodU family ), PhoE (COG0406), His_Phos_1 (pfam00300), SGNH_hydrolase_like_4 (cd04501), AlgX_N (cd14441), HTH_Hin_like (cd00569), RVT-Retrons
SWIM (pfam04434), KOG0318 (KOG0318, WD40 repeat stress protein/actin interacting protein ), HEAT_2 (pfam13646), HEAT (sd00044), polynuc_phos (TIGR03591), rpsO (PRK05626), moaB_proteo (TIGR02667), PKD (smart00089), FHA (smart00240), STKc_PknB_like (cd14014)
DDE_Tnp_1 (pfam01609), SPFH_eoslipins_u2 (cd13438), RND_mfp (TIGR01730), CusA (COG3696)