myRT

myRT report for GCA_009002535.1_ASM900253v1

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Seq: AP020326.1 Mycobacterium avium subsp. hominissuis JP-H-1 DNA, complete genome (5491452 bp)
Overview 1 RT 1: 784850-788790 bp 2 RT 2: 837362-843841 bp 3 RT 3: 918563-924688 bp 4 RT 4: 930701-935137 bp 5 RT 5: 1037503-1041275 bp 6 RT 6: 1043725-1048783 bp 7 RT 7: 1743374-1748106 bp Neighborhood of RT #1 [784850, 788801] Tra8 RVT-GII GIIM InsE Neighborhood of RT #2 [837362, 843841] CzcO CzcO Transposase_mut RVT_N RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 Neighborhood of RT #3 [918563, 924732] XerC RVT-GII GIIM Tra8 Transposase_mut Neighborhood of RT #4 [930701, 935175] MhpC RVT-GII GIIM rve TetR_N TetR_C_35 Neighborhood of RT #5 [1037503, 1041337] IS285 Tra8 RVT-GII GIIM Tra8 excise excise Neighborhood of RT #6 [1043725, 1048783] HTH_23 RVT-GII GIIM Tra8 Neighborhood of RT #7 [1743374, 1748138] AdaB RVT-GII GIIM Tra5 HTH_28 Feature: gene Location: 784850-785140 bp Feature: gene Location: 785141-785530 bp Ori: BBN46305.1 Feature: domain Description: Tra8 Location: 785147-785504 bp Feature: domain Description: Tra8 Location: 7851 47-785504 bp Feature: gene Location: 785715-786797 bp Ori: BBN46306.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785721-786351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785721 -786351 bp Feature: domain Description: GIIM Note: maturase Location: 786426-786642 bp Feature: domain Description: GIIM Note: maturase Location: 786426-786642 bp Feature: gene Location: 787981-788340 bp Feature: gene Location: 788457-788801 bp Ori: BBN46308.1 Feature: domain Description: InsE Location: 788493-788790 bp Feature: domain Description: InsE Location: 788493-788790 bp Feature: gene Location: 837362-837949 bp Ori: BBN46352.1 Feature: domain Description: CzcO Location: 837365-837485 bp Feature: domain Description: CzcO Location: 837365-837485 bp Feature: domain Description: CzcO Location: 837542-837842 bp Feature: domain Description: CzcO Location: 837542-837842 bp Feature: gene Location: 838045-839244 bp Ori: BBN46353.1 Feature: domain Description: Transposase_mut Location: 838117-838933 bp Feature: domain Description: Transposase_mut Location: 8381 1 7-838933 bp Feature: gene Location: 839511-841226 bp Ori: BBN46354.1 Feature: domain Description: RVT_N Location: 839514-839706 bp Feature: domain Description: RVT_N Location: 83951 4-839706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839766-840426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839766-840426 bp Feature: domain Description: GIIM Note: maturase Location: 840495-840726 bp Feature: domain Description: GIIM Note: maturase Location: 840495-840726 bp Feature: gene Location: 842011-843249 bp Ori: BBN46355.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 842023-842494 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 842023-842494 bp Feature: domain Description: Transposase_20 Location: 842836-843088 bp Feature: domain Description: Transposase_20 Location: 842836-843088 bp Feature: gene Location: 843662-843841 bp Feature: gene Location: 918563-919546 bp Ori: BBN46434.1 Feature: domain Description: XerC Location: 918920-919313 bp Feature: domain Description: XerC Location: 91 8920-91 931 3 bp Feature: gene Location: 920152-920334 bp Feature: gene Location: 921211-922665 bp Ori: BBN46436.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921535-922219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921 535-92221 9 bp Feature: domain Description: GIIM Note: maturase Location: 922294-922510 bp Feature: domain Description: GIIM Note: maturase Location: 922294-92251 0 bp Feature: gene Location: 922838-923239 bp Ori: BBN46437.1 Feature: domain Description: Tra8 Location: 922850-923210 bp Feature: domain Description: Tra8 Location: 922850-92321 0 bp Feature: gene Location: 923671-924732 bp Ori: BBN46438.1 Feature: domain Description: Transposase_mut Location: 923692-924688 bp Feature: domain Description: Transposase_mut Location: 923692-924688 bp Feature: gene Location: 930701-931597 bp Ori: BBN46445.1 Feature: domain Description: MhpC Location: 930725-931577 bp Feature: domain Description: MhpC Location: 930725-931 577 bp Feature: gene Location: 931594-931860 bp Feature: gene Location: 932405-933838 bp Ori: BBN46447.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 932708-933395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 932708-933395 bp Feature: domain Description: GIIM Note: maturase Location: 933470-933665 bp Feature: domain Description: GIIM Note: maturase Location: 933470-933665 bp Feature: gene Location: 933796-934254 bp Ori: BBN46448.1 Feature: domain Description: rve Location: 933949-934099 bp Feature: domain Description: rve Location: 933949-934099 bp Feature: gene Location: 934519-935175 bp Ori: BBN46449.1 Feature: domain Description: TetR_N Location: 934603-934735 bp Feature: domain Description: TetR_N Location: 934603-934735 bp Feature: domain Description: TetR_C_35 Location: 934804-935137 bp Feature: domain Description: TetR_C_35 Location: 934804-9351 37 bp Feature: gene Location: 1037503-1038051 bp Ori: BBN46559.1 Feature: domain Description: IS285 Location: 1037563-1038013 bp Feature: domain Description: IS285 Location: 1 037563-1 03801 3 bp Feature: gene Location: 1038045-1038443 bp Ori: BBN46560.1 Feature: domain Description: Tra8 Location: 1038051-1038411 bp Feature: domain Description: Tra8 Location: 1 038051 -1 03841 1 bp Feature: gene Location: 1038610-1040064 bp Ori: BBN46561.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1038934-1039618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 038934-1 03961 8 bp Feature: domain Description: GIIM Note: maturase Location: 1039693-1039909 bp Feature: domain Description: GIIM Note: maturase Location: 1 039693-1 039909 bp Feature: gene Location: 1040608-1041045 bp Ori: BBN46562.1 Feature: domain Description: Tra8 Location: 1040908-1040983 bp Feature: domain Description: Tra8 Location: 1 040908-1 040983 bp Feature: gene Location: 1040987-1041337 bp Ori: BBN46563.1 Feature: domain Description: excise Location: 1041032-1041119 bp Feature: domain Description: excise Location: 1 041 032-1 041 1 1 9 bp Feature: domain Description: excise Location: 1041182-1041275 bp Feature: domain Description: excise Location: 1 041 1 82-1 041 275 bp Feature: gene Location: 1043725-1044021 bp Ori: BBN46567.1 Feature: domain Description: HTH_23 Location: 1043782-1043893 bp Feature: domain Description: HTH_23 Location: 1 043782-1 043893 bp Feature: gene Location: 1044078-1044260 bp Feature: gene Location: 1045137-1046591 bp Ori: BBN46569.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045461-1046145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 045461 -1 0461 45 bp Feature: domain Description: GIIM Note: maturase Location: 1046220-1046436 bp Feature: domain Description: GIIM Note: maturase Location: 1 046220-1 046436 bp Feature: gene Location: 1046764-1047165 bp Ori: BBN46570.1 Feature: domain Description: Tra8 Location: 1046776-1047136 bp Feature: domain Description: Tra8 Location: 1 046776-1 0471 36 bp Feature: gene Location: 1048427-1048783 bp Feature: gene Location: 1743374-1743682 bp Feature: gene Location: 1743735-1743896 bp Ori: BBN47256.1 Feature: domain Description: AdaB Location: 1743738-1743867 bp Feature: domain Description: AdaB Location: 1 743738-1 743867 bp Feature: gene Location: 1744217-1745611 bp Ori: BBN47257.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1744481-1745177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 744481 -1 7451 77 bp Feature: domain Description: GIIM Note: maturase Location: 1745246-1745465 bp Feature: domain Description: GIIM Note: maturase Location: 1 745246-1 745465 bp Feature: gene Location: 1746296-1747978 bp Ori: BBN47258.1 Feature: domain Description: Tra5 Location: 1746395-1747055 bp Feature: domain Description: Tra5 Location: 1 746395-1 747055 bp Feature: gene Location: 1747917-1748138 bp Ori: BBN47259.1 Feature: domain Description: HTH_28 Location: 1747959-1748106 bp Feature: domain Description: HTH_28 Location: 1 747959-1 7481 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-GII, GIIM (pfam08388), InsE (COG2963), CzcO (COG2072), Transposase_mut (pfam00872), RVT_N (pfam13655), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), XerC (COG4973)
MhpC (COG0596), rve (pfam00665), TetR_N (pfam00440), TetR_C_35 (pfam18556), IS285 (COG3328), excise (TIGR01764), HTH_23 (pfam13384), AdaB (COG0350), Tra5 (COG2801), HTH_28 (pfam13518)