myRT

myRT report for GCA_009036045.1_ASM903604v1

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Seq: CP045012.1 Enterococcus faecium strain LAC7.2 chromosome, complete genome (2625745 bp)
Overview 1 RT 1: 245467-250470 bp Neighborhood of RT #1 [245467, 250484] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 245467-245620 bp Feature: gene Location: 245643-246848 bp Ori: QIS82608.1 Feature: domain Description: HTH_XRE Location: 245688-245832 bp Feature: domain Description: HTH_XRE Location: 245688-245832 bp Feature: domain Description: Rol_Rep_N Location: 245859-246126 bp Feature: domain Description: Rol_Rep_N Location: 245859-2461 26 bp Feature: domain Description: Rep_trans Location: 246150-246759 bp Feature: domain Description: Rep_trans Location: 2461 50-246759 bp Feature: gene Location: 247632-249542 bp Ori: QIS82609.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247965-248703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247965-248703 bp Feature: domain Description: HNHc Note: nucleases Location: 249258-249423 bp Feature: domain Description: HNHc Note: nucleases Location: 249258-249423 bp Feature: gene Location: 249646-249870 bp Feature: gene Location: 249987-250484 bp Ori: QIS82610.1 Feature: domain Description: ArdA Location: 250005-250470 bp Feature: domain Description: ArdA Location: 250005-250470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)

Seq: CP045013.1 Enterococcus faecium strain LAC7.2 plasmid pI, complete sequence (206375 bp)
Overview 1 RT 1: 11571-21392 bp Neighborhood of RT #1 [11571, 21392] VirD4 VirD4 RVT-GII HNH_4 TraG-D_C Feature: gene Location: 11571-13625 bp Feature: gene Location: 13625-15454 bp Ori: QIS84805.1 Feature: domain Description: VirD4 Location: 14030-14876 bp Feature: domain Description: VirD4 Location: 14030-14876 bp Feature: domain Description: VirD4 Location: 15266-15428 bp Feature: domain Description: VirD4 Location: 152 66-1542 8 bp Feature: gene Location: 16167-18065 bp Ori: QIS84806.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16488-17223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16488-172 2 3 bp Feature: domain Description: HNH_4 Location: 17817-17922 bp Feature: domain Description: HNH_4 Location: 17817-1792 2 bp Feature: gene Location: 18182-18982 bp Feature: domain Description: TraG-D_C Location: 18185-18500 bp Feature: domain Description: TraG-D_C Location: 18185-18500 bp Feature: gene Location: 18979-21392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, HNH_4 (pfam13395), TraG-D_C (pfam12696)