myRT

myRT report for GCA_009176665.1_ASM917666v1

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Seq: AP021854.1 Bradyrhizobium sp. SG09 DNA, complete genome (8442078 bp)
Overview 1 RT 1: 1772985-1780020 bp 2 RT 2: 1869158-1874288 bp 3 RT 3: 1877955-1883116 bp 4 RT 4: 1964931-1971004 bp 5 RT 5: 6531341-6538436 bp 6 RT 6: 7831750-7836784 bp 7 RT 7: 7915072-7922487 bp 8 RT 8: 8166562-8175009 bp 9 RT 9: 8390510-8395795 bp Neighborhood of RT #1 [1772985, 1780034] rve rve RVT-GII GIIM DUF772 DDE_Tnp_1 DDE_Tnp_1 HU_IHF Neighborhood of RT #2 [1869158, 1874288] MmsB RVT-GII RVT-GII RVT-GII Neighborhood of RT #3 [1877955, 1883196] PHA02518 LomR RVT-GII GIIM DDE_Tnp_IS66 INT_RitB_C_like Neighborhood of RT #4 [1964931, 1971004] PRK08242 fadJ RVT-GII GIIM Neighborhood of RT #5 [6531341, 6538438] BamE PBP2_Bug_TTT RVT-GII GIIM OVP1 thiL Neighborhood of RT #6 [7831750, 7836784] Tra5 HTH_Tnp_1 RVT-GII GIIM Neighborhood of RT #7 [7915072, 7922564] PRK06215 RVT-GII GIIM LptD Neighborhood of RT #8 [8166562, 8175017] CpaD RVT-GII IstB_IS21_ATP IstB_IS21 COG4584 COG4584 Neighborhood of RT #9 [8390510, 8395812] COG3547 RVT-GII GIIM GsiA Feature: gene Location: 1772985-1773287 bp Ori: BBO02302.1 Feature: domain Description: rve Location: 1772988-1773186 bp Feature: domain Description: rve Location: 1 772988-1 7731 86 bp Feature: gene Location: 1773918-1775150 bp Ori: BBO02303.1 Feature: domain Description: rve Location: 1774146-1774467 bp Feature: domain Description: rve Location: 1 7741 46-1 774467 bp Feature: gene Location: 1776578-1777819 bp Ori: BBO02304.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1776770-1777388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 776770-1 777388 bp Feature: domain Description: GIIM Note: maturase Location: 1777439-1777649 bp Feature: domain Description: GIIM Note: maturase Location: 1 777439-1 777649 bp Feature: gene Location: 1778172-1779518 bp Ori: BBO02305.1 Feature: domain Description: DUF772 Location: 1778331-1778547 bp Feature: domain Description: DUF772 Location: 1 778331 -1 778547 bp Feature: domain Description: DDE_Tnp_1 Location: 1779000-1779219 bp Feature: domain Description: DDE_Tnp_1 Location: 1 779000-1 77921 9 bp Feature: domain Description: DDE_Tnp_1 Location: 1779291-1779408 bp Feature: domain Description: DDE_Tnp_1 Location: 1 779291 -1 779408 bp Feature: gene Location: 1779756-1780034 bp Ori: BBO02306.1 Gene: hupT Feature: domain Description: HU_IHF Location: 1779771-1780020 bp Feature: domain Description: HU_IHF Location: 1 779771 -1 780020 bp Feature: gene Location: 1869158-1869328 bp Ori: BBO02405.1 Feature: domain Description: MmsB Location: 1869176-1869287 bp Feature: domain Description: MmsB Location: 1 8691 76-1 869287 bp Feature: gene Location: 1869293-1869430 bp Feature: gene Location: 1869665-1870225 bp Ori: BBO02407.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1870073-1870151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 870073-1 8701 51 bp Feature: gene Location: 1870152-1870424 bp Ori: BBO02408.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1870155-1870413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8701 55-1 87041 3 bp Feature: gene Location: 1870463-1870663 bp Feature: gene Location: 1870556-1871143 bp Ori: BBO02410.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1870559-1870766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 870559-1 870766 bp Feature: gene Location: 1872510-1872776 bp Feature: gene Location: 1873749-1874288 bp Feature: gene Location: 1877955-1878623 bp Ori: BBO02416.1 Feature: domain Description: PHA02518 Location: 1877964-1878561 bp Feature: domain Description: PHA0251 8 Location: 1 877964-1 878561 bp Feature: gene Location: 1879067-1879903 bp Ori: BBO02417.1 Feature: domain Description: LomR Location: 1879103-1879814 bp Feature: domain Description: LomR Location: 1 8791 03-1 87981 4 bp Feature: gene Location: 1879839-1881167 bp Ori: BBO02418.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1880130-1880793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8801 30-1 880793 bp Feature: domain Description: GIIM Note: maturase Location: 1880859-1881081 bp Feature: domain Description: GIIM Note: maturase Location: 1 880859-1 881 081 bp Feature: gene Location: 1881404-1882129 bp Ori: BBO02419.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1881422-1881857 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 881 422-1 881 857 bp Feature: gene Location: 1882636-1883196 bp Ori: BBO02420.1 Feature: domain Description: INT_RitB_C_like Location: 1882639-1883116 bp Feature: domain Description: INT_RitB_C_like Location: 1 882639-1 8831 1 6 bp Feature: gene Location: 1964931-1966139 bp Ori: BBO02494.1 Feature: domain Description: PRK08242 Location: 1964934-1966137 bp Feature: domain Description: PRK08242 Location: 1 964934-1 9661 37 bp Feature: gene Location: 1966291-1968504 bp Ori: BBO02495.1 Gene: fadB_1 Feature: domain Description: fadJ Location: 1966300-1968475 bp Feature: domain Description: fadJ Location: 1 966300-1 968475 bp Feature: gene Location: 1969115-1970356 bp Ori: BBO02496.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1969307-1969925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 969307-1 969925 bp Feature: domain Description: GIIM Note: maturase Location: 1969976-1970186 bp Feature: domain Description: GIIM Note: maturase Location: 1 969976-1 9701 86 bp Feature: gene Location: 1970558-1970767 bp Feature: gene Location: 1970696-1971004 bp Feature: gene Location: 6531341-6531826 bp Ori: BBO06759.1 Feature: domain Description: BamE Location: 6531419-6531806 bp Feature: domain Description: BamE Location: 6531 41 9-6531 806 bp Feature: gene Location: 6532046-6533044 bp Ori: BBO06760.1 Feature: domain Description: PBP2_Bug_TTT Location: 6532145-6533018 bp Feature: domain Description: PBP2_Bug_TTT Location: 65321 45-653301 8 bp Feature: gene Location: 6533235-6534476 bp Ori: BBO06761.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6533427-6534045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6533427-6534045 bp Feature: domain Description: GIIM Note: maturase Location: 6534096-6534306 bp Feature: domain Description: GIIM Note: maturase Location: 6534096-6534306 bp Feature: gene Location: 6535085-6537103 bp Ori: BBO06762.1 Gene: hppA Feature: domain Description: OVP1 Location: 6535088-6537101 bp Feature: domain Description: OVP1 Location: 6535088-65371 01 bp Feature: gene Location: 6537440-6538438 bp Ori: BBO06763.1 Gene: thiL Feature: domain Description: thiL Location: 6537470-6538436 bp Feature: domain Description: thiL Location: 6537470-6538436 bp Feature: gene Location: 7831750-7832580 bp Ori: BBO08011.1 Feature: domain Description: Tra5 Location: 7831765-7832458 bp Feature: domain Description: Tra5 Location: 7831 765-7832458 bp Feature: gene Location: 7832600-7832854 bp Ori: BBO08012.1 Feature: domain Description: HTH_Tnp_1 Location: 7832606-7832813 bp Feature: domain Description: HTH_Tnp_1 Location: 7832606-783281 3 bp Feature: gene Location: 7833031-7834275 bp Ori: BBO08013.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7833232-7833889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7833232-7833889 bp Feature: domain Description: GIIM Note: maturase Location: 7833967-7834195 bp Feature: domain Description: GIIM Note: maturase Location: 7833967-78341 95 bp Feature: gene Location: 7835784-7836017 bp Feature: gene Location: 7836485-7836784 bp Feature: gene Location: 7915072-7915332 bp Feature: gene Location: 7916477-7917214 bp Ori: BBO08072.1 Feature: domain Description: PRK06215 Location: 7916486-7917209 bp Feature: domain Description: PRK0621 5 Location: 791 6486-791 7209 bp Feature: gene Location: 7918081-7919310 bp Ori: BBO08073.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7918282-7918939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791 8282-791 8939 bp Feature: domain Description: GIIM Note: maturase Location: 7919014-7919218 bp Feature: domain Description: GIIM Note: maturase Location: 791 901 4-791 921 8 bp Feature: gene Location: 7919902-7920093 bp Feature: gene Location: 7920111-7922564 bp Ori: BBO08075.1 Gene: lptD_2 Feature: domain Description: LptD Location: 7920291-7922487 bp Feature: domain Description: LptD Location: 7920291 -7922487 bp Feature: gene Location: 8166562-8167224 bp Ori: BBO08268.1 Feature: domain Description: CpaD Location: 8166595-8167135 bp Feature: domain Description: CpaD Location: 81 66595-81 671 35 bp Feature: gene Location: 8167420-8169735 bp Feature: gene Location: 8170028-8171410 bp Ori: BBO08270.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8170355-8171045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 70355-81 71 045 bp Feature: gene Location: 8172922-8173653 bp Ori: BBO08271.1 Feature: domain Description: IstB_IS21_ATP Location: 8172943-8173027 bp Feature: domain Description: IstB_IS21 _ATP Location: 81 72943-81 73027 bp Feature: domain Description: IstB_IS21 Location: 8173033-8173558 bp Feature: domain Description: IstB_IS21 Location: 81 73033-81 73558 bp Feature: gene Location: 8173659-8175017 bp Ori: BBO08272.1 Feature: domain Description: COG4584 Location: 8173734-8174535 bp Feature: domain Description: COG4584 Location: 81 73734-81 74535 bp Feature: domain Description: COG4584 Location: 8174565-8175009 bp Feature: domain Description: COG4584 Location: 81 74565-81 75009 bp Feature: gene Location: 8390510-8391427 bp Ori: BBO08479.1 Feature: domain Description: COG3547 Location: 8390633-8391371 bp Feature: domain Description: COG3547 Location: 8390633-8391 371 bp Feature: gene Location: 8391415-8392644 bp Ori: BBO08480.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8391616-8392273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8391 61 6-8392273 bp Feature: domain Description: GIIM Note: maturase Location: 8392348-8392552 bp Feature: domain Description: GIIM Note: maturase Location: 8392348-8392552 bp Feature: gene Location: 8393614-8393796 bp Feature: gene Location: 8394085-8395812 bp Ori: BBO08482.1 Feature: domain Description: GsiA Location: 8394148-8395795 bp Feature: domain Description: GsiA Location: 83941 48-8395795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), HU_IHF (cl00257), MmsB (COG2084), PHA02518 (ParA-like protein; Provisional), LomR (COG3637), DDE_Tnp_IS66 (pfam03050)
INT_RitB_C_like (cd00797), PRK08242 (acetyl-CoA C-acetyltransferase), fadJ (PRK11154), BamE (COG2913), PBP2_Bug_TTT (cd07012), OVP1 (COG3808), thiL (TIGR01379), Tra5 (COG2801), HTH_Tnp_1 (pfam01527), PRK06215 (hypothetical protein; Provisional)
LptD (COG1452), CpaD (COG5461), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase ), COG3547 (Transposase ), GsiA (COG1123)