myRT

myRT report for GCA_009184785.1_ASM918478v1

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Seq: CP045084.1 Staphylococcus pseudintermedius strain KCTC 43134 chromosome, complete genome (2611104 bp)
Overview 1 RT 1: 35174-40077 bp 2 RT 2: 563927-568849 bp 3 RT 3: 606259-611537 bp 4 RT 4: 1231830-1235726 bp 5 RT 5: 1254472-1258368 bp 6 RT 6: 1787223-1790986 bp 7 RT 7: 1820436-1824200 bp 8 RT 8: 1903169-1906887 bp 9 RT 9: 1935705-1944670 bp 10 RT 10: 2406019-2410367 bp Neighborhood of RT #1 [35174, 40142] hemE HmoA RVT-GII GIIM EcsB Neighborhood of RT #2 [563927, 569010] TenA AcrR RVT-GII GIIM YvbJ Neighborhood of RT #3 [606259, 611557] DUF3139 M20_ArgE_RocB RVT-GII GIIM NarK Neighborhood of RT #4 [1231830, 1235726] RVT-GII GIIM Coagulase Neighborhood of RT #5 [1254472, 1258373] RVT-GII GIIM LysM LysM LysM PRK08581 Neighborhood of RT #6 [1787223, 1790986] RVT-GII PRK09183 Neighborhood of RT #7 [1820436, 1824200] RVT-GII GIIM Neighborhood of RT #8 [1903169, 1906910] TrkA RVT-GII LysA Neighborhood of RT #9 [1935705, 1944681] FtsW RVT-GII GIIM RVT-GII GIIM COG3860 PycA Neighborhood of RT #10 [2406019, 2410378] rpsU RVT-GII GIIM MiaB RsmE Feature: gene Location: 35174-36232 bp Feature: domain Description: hemE Location: 35210-36224 bp Feature: domain Description: hemE Location: 3521 0-36224 bp Feature: gene Location: 36493-37032 bp Feature: domain Description: HmoA Location: 36736-36955 bp Feature: domain Description: HmoA Location: 36736-36955 bp Feature: gene Location: 37100-38395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37325-37940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37325-37940 bp Feature: domain Description: GIIM Note: maturase Location: 38000-38231 bp Feature: domain Description: GIIM Note: maturase Location: 38000-38231 bp Feature: gene Location: 38497-38655 bp Feature: gene Location: 38928-40142 bp Feature: domain Description: EcsB Location: 38946-40077 bp Feature: domain Description: EcsB Location: 38946-40077 bp Feature: gene Location: 563927-564670 bp Feature: domain Description: TenA Location: 563999-564641 bp Feature: domain Description: TenA Location: 563999-564641 bp Feature: gene Location: 564695-565303 bp Feature: domain Description: AcrR Location: 564851-565061 bp Feature: domain Description: AcrR Location: 564851 -565061 bp Feature: gene Location: 565724-567019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565949-566564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565949-566564 bp Feature: domain Description: GIIM Note: maturase Location: 566624-566855 bp Feature: domain Description: GIIM Note: maturase Location: 566624-566855 bp Feature: gene Location: 567121-567279 bp Feature: gene Location: 567583-569010 bp Feature: domain Description: YvbJ Location: 567619-568849 bp Feature: domain Description: YvbJ Location: 56761 9-568849 bp Feature: gene Location: 606259-606630 bp Feature: domain Description: DUF3139 Location: 606283-606514 bp Feature: domain Description: DUF31 39 Location: 606283-60651 4 bp Feature: gene Location: 606766-608397 bp Feature: domain Description: M20_ArgE_RocB Location: 606835-608386 bp Feature: domain Description: M20_ArgE_RocB Location: 606835-608386 bp Feature: gene Location: 608505-609800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608730-609345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608730-609345 bp Feature: domain Description: GIIM Note: maturase Location: 609405-609636 bp Feature: domain Description: GIIM Note: maturase Location: 609405-609636 bp Feature: gene Location: 609902-610060 bp Feature: gene Location: 610379-611557 bp Feature: domain Description: NarK Location: 610394-611537 bp Feature: domain Description: NarK Location: 61 0394-61 1 537 bp Feature: gene Location: 1231830-1231985 bp Feature: gene Location: 1232091-1232249 bp Feature: gene Location: 1232351-1233646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1232576-1233191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 232576-1 2331 91 bp Feature: domain Description: GIIM Note: maturase Location: 1233251-1233482 bp Feature: domain Description: GIIM Note: maturase Location: 1 233251 -1 233482 bp Feature: gene Location: 1233806-1235314 bp Feature: domain Description: Coagulase Location: 1233944-1234571 bp Feature: domain Description: Coagulase Location: 1 233944-1 234571 bp Feature: gene Location: 1235583-1235726 bp Feature: gene Location: 1254472-1254735 bp Feature: gene Location: 1254841-1254999 bp Feature: gene Location: 1255101-1256396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1255326-1255941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 255326-1 255941 bp Feature: domain Description: GIIM Note: maturase Location: 1256001-1256232 bp Feature: domain Description: GIIM Note: maturase Location: 1 256001 -1 256232 bp Feature: gene Location: 1256747-1257028 bp Feature: gene Location: 1257366-1258373 bp Feature: domain Description: LysM Location: 1257447-1257576 bp Feature: domain Description: LysM Location: 1 257447-1 257576 bp Feature: domain Description: LysM Location: 1257645-1257771 bp Feature: domain Description: LysM Location: 1 257645-1 257771 bp Feature: domain Description: LysM Location: 1257849-1257975 bp Feature: domain Description: LysM Location: 1 257849-1 257975 bp Feature: domain Description: PRK08581 Location: 1258023-1258368 bp Feature: domain Description: PRK08581 Location: 1 258023-1 258368 bp Feature: gene Location: 1787223-1787978 bp Feature: gene Location: 1788152-1788286 bp Feature: gene Location: 1788407-1789402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1788632-1789247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 788632-1 789247 bp Feature: gene Location: 1789770-1790153 bp Feature: domain Description: PRK09183 Location: 1789911-1790142 bp Feature: domain Description: PRK091 83 Location: 1 78991 1 -1 7901 42 bp Feature: gene Location: 1790858-1790986 bp Feature: gene Location: 1820436-1820588 bp Feature: gene Location: 1820622-1820936 bp Feature: gene Location: 1821492-1822787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1821717-1822332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 821 71 7-1 822332 bp Feature: domain Description: GIIM Note: maturase Location: 1822392-1822623 bp Feature: domain Description: GIIM Note: maturase Location: 1 822392-1 822623 bp Feature: gene Location: 1823158-1823373 bp Feature: gene Location: 1823874-1824200 bp Feature: gene Location: 1903169-1903828 bp Feature: domain Description: TrkA Location: 1903178-1903820 bp Feature: domain Description: TrkA Location: 1 9031 78-1 903820 bp Feature: gene Location: 1904107-1904265 bp Feature: gene Location: 1904367-1905362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1904592-1905207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 904592-1 905207 bp Feature: gene Location: 1905483-1905662 bp Feature: gene Location: 1905819-1906910 bp Feature: domain Description: LysA Location: 1905855-1906887 bp Feature: domain Description: LysA Location: 1 905855-1 906887 bp Feature: gene Location: 1935705-1936937 bp Feature: domain Description: FtsW Location: 1935744-1936884 bp Feature: domain Description: FtsW Location: 1 935744-1 936884 bp Feature: gene Location: 1937259-1937417 bp Feature: gene Location: 1937519-1938814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1937744-1938359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 937744-1 938359 bp Feature: domain Description: GIIM Note: maturase Location: 1938419-1938650 bp Feature: domain Description: GIIM Note: maturase Location: 1 93841 9-1 938650 bp Feature: gene Location: 1939127-1939285 bp Feature: gene Location: 1939387-1940682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1939612-1940227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 93961 2-1 940227 bp Feature: domain Description: GIIM Note: maturase Location: 1940287-1940518 bp Feature: domain Description: GIIM Note: maturase Location: 1 940287-1 94051 8 bp Feature: gene Location: 1940851-1941033 bp Feature: domain Description: COG3860 Location: 1940866-1940986 bp Feature: domain Description: COG3860 Location: 1 940866-1 940986 bp Feature: gene Location: 1941232-1944681 bp Feature: domain Description: PycA Location: 1941238-1944670 bp Feature: domain Description: PycA Location: 1 941 238-1 944670 bp Feature: gene Location: 2406019-2406195 bp Feature: domain Description: rpsU Location: 2406022-2406193 bp Feature: domain Description: rpsU Location: 2406022-24061 93 bp Feature: gene Location: 2406659-2406817 bp Feature: gene Location: 2406919-2408214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2407144-2407759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24071 44-2407759 bp Feature: domain Description: GIIM Note: maturase Location: 2407819-2408050 bp Feature: domain Description: GIIM Note: maturase Location: 240781 9-2408050 bp Feature: gene Location: 2408263-2409621 bp Feature: domain Description: MiaB Location: 2408266-2409553 bp Feature: domain Description: MiaB Location: 2408266-2409553 bp Feature: gene Location: 2409626-2410378 bp Feature: domain Description: RsmE Location: 2409629-2410367 bp Feature: domain Description: RsmE Location: 2409629-241 0367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hemE (TIGR01464), HmoA (COG2329), RVT-GII, GIIM (pfam08388), EcsB (pfam05975), TenA (COG0819), AcrR (COG1309), YvbJ (COG4640), DUF3139 (pfam11337), M20_ArgE_RocB (cd05654)
NarK (COG2223), Coagulase (pfam08764), LysM (smart00257), PRK08581 (amidase domain-containing protein), PRK09183 (transposase/IS protein; Provisional), TrkA (COG0569), LysA (COG0019), FtsW (COG0772), COG3860 (Uncharacterized protein, DUF2087 family ), PycA (COG1038)
rpsU (PRK00270), MiaB (COG0621), RsmE (COG1385)