myRT

myRT report for GCA_009184805.1_ASM918480v1

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Seq: CP045086.1 Staphylococcus pseudintermedius strain KCTC 43136 chromosome, complete genome (2618293 bp)
Overview 1 RT 1: 10531-14264 bp 2 RT 2: 93241-96819 bp 3 RT 3: 126455-130218 bp 4 RT 4: 664373-668274 bp 5 RT 5: 686673-691745 bp 6 RT 6: 1162172-1168569 bp 7 RT 7: 1313052-1318234 bp 8 RT 8: 1355599-1360653 bp 9 RT 9: 1884488-1889448 bp 10 RT 10: 2125356-2129330 bp 11 RT 11: 2591053-2599976 bp Neighborhood of RT #1 [10531, 14272] LysA RVT-GII TrkA Neighborhood of RT #2 [93241, 96819] RVT-GII GIIM Neighborhood of RT #3 [126455, 130218] PRK09183 RVT-GII Neighborhood of RT #4 [664373, 668274] LysM LysM LysM PRK08581 RVT-GII GIIM Neighborhood of RT #5 [686673, 691750] Coagulase RVT-GII GIIM COG2842 Neighborhood of RT #6 [1162172, 1168571] Glyphos_transf GT4_GT28_WabH-like RVT-GII GIIM COG3333 TctB Neighborhood of RT #7 [1313052, 1318350] NarK RVT-GII GIIM M20_ArgE_RocB DUF3139 Neighborhood of RT #8 [1355599, 1360682] YvbJ RVT-GII GIIM AcrR TenA Neighborhood of RT #9 [1884488, 1889456] EcsB RVT-GII GIIM HmoA hemE Neighborhood of RT #10 [2125356, 2129330] RsmE MiaB RVT-GII GIIM Neighborhood of RT #11 [2591053, 2600029] PycA COG3860 RVT-GII GIIM RVT-GII GIIM FtsW Feature: gene Location: 10531-11622 bp Feature: domain Description: LysA Location: 10567-11599 bp Feature: domain Description: LysA Location: 1 0567-1 1 599 bp Feature: gene Location: 11779-11958 bp Feature: gene Location: 12079-13074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12304-12919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2304-1 291 9 bp Feature: gene Location: 13176-13334 bp Feature: gene Location: 13613-14272 bp Feature: domain Description: TrkA Location: 13622-14264 bp Feature: domain Description: TrkA Location: 1 3622-1 4264 bp Feature: gene Location: 93241-93567 bp Feature: gene Location: 94068-94283 bp Feature: gene Location: 94654-95949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94879-95494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94879-95494 bp Feature: domain Description: GIIM Note: maturase Location: 95554-95785 bp Feature: domain Description: GIIM Note: maturase Location: 95554-95785 bp Feature: gene Location: 96317-96475 bp Feature: gene Location: 96505-96819 bp Feature: gene Location: 126455-126583 bp Feature: gene Location: 127288-127671 bp Feature: domain Description: PRK09183 Location: 127429-127660 bp Feature: domain Description: PRK091 83 Location: 1 27429-1 27660 bp Feature: gene Location: 128039-129034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128264-128879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 28264-1 28879 bp Feature: gene Location: 129155-129289 bp Feature: gene Location: 129463-130218 bp Feature: gene Location: 664373-665380 bp Feature: domain Description: LysM Location: 664454-664583 bp Feature: domain Description: LysM Location: 664454-664583 bp Feature: domain Description: LysM Location: 664652-664778 bp Feature: domain Description: LysM Location: 664652-664778 bp Feature: domain Description: LysM Location: 664856-664982 bp Feature: domain Description: LysM Location: 664856-664982 bp Feature: domain Description: PRK08581 Location: 665030-665375 bp Feature: domain Description: PRK08581 Location: 665030-665375 bp Feature: gene Location: 665718-665999 bp Feature: gene Location: 666350-667645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 666575-667190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 666575-6671 90 bp Feature: domain Description: GIIM Note: maturase Location: 667250-667481 bp Feature: domain Description: GIIM Note: maturase Location: 667250-667481 bp Feature: gene Location: 667747-667905 bp Feature: gene Location: 668011-668274 bp Feature: gene Location: 686673-686864 bp Feature: gene Location: 687432-688940 bp Feature: domain Description: Coagulase Location: 687570-688197 bp Feature: domain Description: Coagulase Location: 687570-6881 97 bp Feature: gene Location: 689100-690395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 689325-689940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 689325-689940 bp Feature: domain Description: GIIM Note: maturase Location: 690000-690231 bp Feature: domain Description: GIIM Note: maturase Location: 690000-690231 bp Feature: gene Location: 690497-690655 bp Feature: gene Location: 690935-691750 bp Feature: domain Description: COG2842 Location: 690944-691745 bp Feature: domain Description: COG2842 Location: 690944-691 745 bp Feature: gene Location: 1162172-1164691 bp Feature: domain Description: Glyphos_transf Location: 1162307-1163405 bp Feature: domain Description: Glyphos_transf Location: 1 1 62307-1 1 63405 bp Feature: domain Description: GT4_GT28_WabH-like Location: 1163459-1164677 bp Feature: domain Description: GT4_GT28_WabH-like Location: 1 1 63459-1 1 64677 bp Feature: gene Location: 1164976-1165134 bp Feature: gene Location: 1165236-1166531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1165461-1166076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 65461 -1 1 66076 bp Feature: domain Description: GIIM Note: maturase Location: 1166136-1166367 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 661 36-1 1 66367 bp Feature: gene Location: 1166616-1168115 bp Feature: domain Description: COG3333 Location: 1166631-1168104 bp Feature: domain Description: COG3333 Location: 1 1 66631 -1 1 681 04 bp Feature: gene Location: 1168128-1168571 bp Feature: domain Description: TctB Location: 1168146-1168569 bp Feature: domain Description: TctB Location: 1 1 681 46-1 1 68569 bp Feature: gene Location: 1313052-1314230 bp Feature: domain Description: NarK Location: 1313067-1314210 bp Feature: domain Description: NarK Location: 1 31 3067-1 31 421 0 bp Feature: gene Location: 1314549-1314707 bp Feature: gene Location: 1314809-1316104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1315034-1315649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 5034-1 31 5649 bp Feature: domain Description: GIIM Note: maturase Location: 1315709-1315940 bp Feature: domain Description: GIIM Note: maturase Location: 1 31 5709-1 31 5940 bp Feature: gene Location: 1316212-1317843 bp Feature: domain Description: M20_ArgE_RocB Location: 1316281-1317832 bp Feature: domain Description: M20_ArgE_RocB Location: 1 31 6281 -1 31 7832 bp Feature: gene Location: 1317979-1318350 bp Feature: domain Description: DUF3139 Location: 1318003-1318234 bp Feature: domain Description: DUF31 39 Location: 1 31 8003-1 31 8234 bp Feature: gene Location: 1355599-1357026 bp Feature: domain Description: YvbJ Location: 1355635-1356865 bp Feature: domain Description: YvbJ Location: 1 355635-1 356865 bp Feature: gene Location: 1357330-1357488 bp Feature: gene Location: 1357590-1358885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1357815-1358430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 35781 5-1 358430 bp Feature: domain Description: GIIM Note: maturase Location: 1358490-1358721 bp Feature: domain Description: GIIM Note: maturase Location: 1 358490-1 358721 bp Feature: gene Location: 1359306-1359914 bp Feature: domain Description: AcrR Location: 1359462-1359672 bp Feature: domain Description: AcrR Location: 1 359462-1 359672 bp Feature: gene Location: 1359939-1360682 bp Feature: domain Description: TenA Location: 1360011-1360653 bp Feature: domain Description: TenA Location: 1 36001 1 -1 360653 bp Feature: gene Location: 1884488-1885702 bp Feature: domain Description: EcsB Location: 1884506-1885637 bp Feature: domain Description: EcsB Location: 1 884506-1 885637 bp Feature: gene Location: 1885975-1886133 bp Feature: gene Location: 1886235-1887530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1886460-1887075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 886460-1 887075 bp Feature: domain Description: GIIM Note: maturase Location: 1887135-1887366 bp Feature: domain Description: GIIM Note: maturase Location: 1 8871 35-1 887366 bp Feature: gene Location: 1887598-1888137 bp Feature: domain Description: HmoA Location: 1887841-1888060 bp Feature: domain Description: HmoA Location: 1 887841 -1 888060 bp Feature: gene Location: 1888398-1889456 bp Feature: domain Description: hemE Location: 1888434-1889448 bp Feature: domain Description: hemE Location: 1 888434-1 889448 bp Feature: gene Location: 2125356-2126108 bp Feature: domain Description: RsmE Location: 2125359-2126097 bp Feature: domain Description: RsmE Location: 21 25359-21 26097 bp Feature: gene Location: 2126113-2127471 bp Feature: domain Description: MiaB Location: 2126116-2127403 bp Feature: domain Description: MiaB Location: 21 261 1 6-21 27403 bp Feature: gene Location: 2127520-2128815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2127745-2128360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 27745-21 28360 bp Feature: domain Description: GIIM Note: maturase Location: 2128420-2128651 bp Feature: domain Description: GIIM Note: maturase Location: 21 28420-21 28651 bp Feature: gene Location: 2128917-2129075 bp Feature: gene Location: 2129181-2129330 bp Feature: gene Location: 2591053-2594502 bp Feature: domain Description: PycA Location: 2591059-2594491 bp Feature: domain Description: PycA Location: 2591 059-2594491 bp Feature: gene Location: 2594701-2594883 bp Feature: domain Description: COG3860 Location: 2594716-2594836 bp Feature: domain Description: COG3860 Location: 259471 6-2594836 bp Feature: gene Location: 2595052-2596347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2595277-2595892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2595277-2595892 bp Feature: domain Description: GIIM Note: maturase Location: 2595952-2596183 bp Feature: domain Description: GIIM Note: maturase Location: 2595952-25961 83 bp Feature: gene Location: 2596449-2596607 bp Feature: gene Location: 2596920-2598215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2597145-2597760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25971 45-2597760 bp Feature: domain Description: GIIM Note: maturase Location: 2597820-2598051 bp Feature: domain Description: GIIM Note: maturase Location: 2597820-2598051 bp Feature: gene Location: 2598317-2598475 bp Feature: gene Location: 2598797-2600029 bp Feature: domain Description: FtsW Location: 2598836-2599976 bp Feature: domain Description: FtsW Location: 2598836-2599976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysA (COG0019), RVT-GII, TrkA (COG0569), GIIM (pfam08388), PRK09183 (transposase/IS protein; Provisional), LysM (smart00257), PRK08581 (amidase domain-containing protein), Coagulase (pfam08764), COG2842 (Bacteriophage DNA transposition protein, AAA+ family ATPase ), Glyphos_transf (pfam04464)
GT4_GT28_WabH-like (cd03811), COG3333 (TctA family transporter ), TctB (pfam07331), NarK (COG2223), M20_ArgE_RocB (cd05654), DUF3139 (pfam11337), YvbJ (COG4640), AcrR (COG1309), TenA (COG0819), EcsB (pfam05975)
HmoA (COG2329), hemE (TIGR01464), RsmE (COG1385), MiaB (COG0621), PycA (COG1038), COG3860 (Uncharacterized protein, DUF2087 family ), FtsW (COG0772)