myRT

myRT report for GCA_009184825.1_ASM918482v1

Download annotations/find similar RTs

Seq: CP045085.1 Staphylococcus pseudintermedius strain KCTC 43135 chromosome, complete genome (2616426 bp)
Overview 1 RT 1: 336262-340610 bp 2 RT 2: 576521-581424 bp 3 RT 3: 1105295-1110217 bp 4 RT 4: 1147627-1152905 bp 5 RT 5: 1773193-1777089 bp 6 RT 6: 1795835-1799731 bp 7 RT 7: 2333892-2337655 bp 8 RT 8: 2367105-2370869 bp 9 RT 9: 2449838-2453556 bp 10 RT 10: 2482374-2491339 bp Neighborhood of RT #1 [336262, 340621] rpsU RVT-GII GIIM MiaB RsmE Neighborhood of RT #2 [576521, 581489] hemE HmoA RVT-GII GIIM EcsB Neighborhood of RT #3 [1105295, 1110378] TenA AcrR RVT-GII GIIM YvbJ Neighborhood of RT #4 [1147627, 1152925] DUF3139 M20_ArgE_RocB RVT-GII GIIM NarK Neighborhood of RT #5 [1773193, 1777089] RVT-GII GIIM Coagulase Neighborhood of RT #6 [1795835, 1799736] RVT-GII GIIM LysM LysM LysM PRK08581 Neighborhood of RT #7 [2333892, 2337655] RVT-GII PRK09183 Neighborhood of RT #8 [2367105, 2370869] RVT-GII GIIM Neighborhood of RT #9 [2449838, 2453579] TrkA RVT-GII LysA Neighborhood of RT #10 [2482374, 2491350] FtsW RVT-GII GIIM RVT-GII GIIM COG3860 PycA Feature: gene Location: 336262-336438 bp Feature: domain Description: rpsU Location: 336265-336436 bp Feature: domain Description: rpsU Location: 336265-336436 bp Feature: gene Location: 336902-337060 bp Feature: gene Location: 337162-338457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337387-338002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337387-338002 bp Feature: domain Description: GIIM Note: maturase Location: 338062-338293 bp Feature: domain Description: GIIM Note: maturase Location: 338062-338293 bp Feature: gene Location: 338506-339864 bp Feature: domain Description: MiaB Location: 338509-339796 bp Feature: domain Description: MiaB Location: 338509-339796 bp Feature: gene Location: 339869-340621 bp Feature: domain Description: RsmE Location: 339872-340610 bp Feature: domain Description: RsmE Location: 339872-34061 0 bp Feature: gene Location: 576521-577579 bp Feature: domain Description: hemE Location: 576557-577571 bp Feature: domain Description: hemE Location: 576557-577571 bp Feature: gene Location: 577840-578379 bp Feature: domain Description: HmoA Location: 578083-578302 bp Feature: domain Description: HmoA Location: 578083-578302 bp Feature: gene Location: 578447-579742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 578672-579287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 578672-579287 bp Feature: domain Description: GIIM Note: maturase Location: 579347-579578 bp Feature: domain Description: GIIM Note: maturase Location: 579347-579578 bp Feature: gene Location: 579844-580002 bp Feature: gene Location: 580275-581489 bp Feature: domain Description: EcsB Location: 580293-581424 bp Feature: domain Description: EcsB Location: 580293-581 424 bp Feature: gene Location: 1105295-1106038 bp Feature: domain Description: TenA Location: 1105367-1106009 bp Feature: domain Description: TenA Location: 1 1 05367-1 1 06009 bp Feature: gene Location: 1106063-1106671 bp Feature: domain Description: AcrR Location: 1106219-1106429 bp Feature: domain Description: AcrR Location: 1 1 0621 9-1 1 06429 bp Feature: gene Location: 1107092-1108387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1107317-1107932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 0731 7-1 1 07932 bp Feature: domain Description: GIIM Note: maturase Location: 1107992-1108223 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 07992-1 1 08223 bp Feature: gene Location: 1108489-1108647 bp Feature: gene Location: 1108951-1110378 bp Feature: domain Description: YvbJ Location: 1108987-1110217 bp Feature: domain Description: YvbJ Location: 1 1 08987-1 1 1 021 7 bp Feature: gene Location: 1147627-1147998 bp Feature: domain Description: DUF3139 Location: 1147651-1147882 bp Feature: domain Description: DUF31 39 Location: 1 1 47651 -1 1 47882 bp Feature: gene Location: 1148134-1149765 bp Feature: domain Description: M20_ArgE_RocB Location: 1148203-1149754 bp Feature: domain Description: M20_ArgE_RocB Location: 1 1 48203-1 1 49754 bp Feature: gene Location: 1149873-1151168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1150098-1150713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 50098-1 1 5071 3 bp Feature: domain Description: GIIM Note: maturase Location: 1150773-1151004 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 50773-1 1 51 004 bp Feature: gene Location: 1151270-1151428 bp Feature: gene Location: 1151747-1152925 bp Feature: domain Description: NarK Location: 1151762-1152905 bp Feature: domain Description: NarK Location: 1 1 51 762-1 1 52905 bp Feature: gene Location: 1773193-1773348 bp Feature: gene Location: 1773454-1773612 bp Feature: gene Location: 1773714-1775009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1773939-1774554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 773939-1 774554 bp Feature: domain Description: GIIM Note: maturase Location: 1774614-1774845 bp Feature: domain Description: GIIM Note: maturase Location: 1 77461 4-1 774845 bp Feature: gene Location: 1775169-1776677 bp Feature: domain Description: Coagulase Location: 1775307-1775934 bp Feature: domain Description: Coagulase Location: 1 775307-1 775934 bp Feature: gene Location: 1776946-1777089 bp Feature: gene Location: 1795835-1796098 bp Feature: gene Location: 1796204-1796362 bp Feature: gene Location: 1796464-1797759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1796689-1797304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 796689-1 797304 bp Feature: domain Description: GIIM Note: maturase Location: 1797364-1797595 bp Feature: domain Description: GIIM Note: maturase Location: 1 797364-1 797595 bp Feature: gene Location: 1798110-1798391 bp Feature: gene Location: 1798729-1799736 bp Feature: domain Description: LysM Location: 1798810-1798939 bp Feature: domain Description: LysM Location: 1 79881 0-1 798939 bp Feature: domain Description: LysM Location: 1799008-1799134 bp Feature: domain Description: LysM Location: 1 799008-1 7991 34 bp Feature: domain Description: LysM Location: 1799212-1799338 bp Feature: domain Description: LysM Location: 1 79921 2-1 799338 bp Feature: domain Description: PRK08581 Location: 1799386-1799731 bp Feature: domain Description: PRK08581 Location: 1 799386-1 799731 bp Feature: gene Location: 2333892-2334647 bp Feature: gene Location: 2334821-2334955 bp Feature: gene Location: 2335076-2336071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2335301-2335916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2335301 -233591 6 bp Feature: gene Location: 2336439-2336822 bp Feature: domain Description: PRK09183 Location: 2336580-2336811 bp Feature: domain Description: PRK091 83 Location: 2336580-233681 1 bp Feature: gene Location: 2337527-2337655 bp Feature: gene Location: 2367105-2367257 bp Feature: gene Location: 2367291-2367605 bp Feature: gene Location: 2368161-2369456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2368386-2369001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2368386-2369001 bp Feature: domain Description: GIIM Note: maturase Location: 2369061-2369292 bp Feature: domain Description: GIIM Note: maturase Location: 2369061 -2369292 bp Feature: gene Location: 2369827-2370042 bp Feature: gene Location: 2370543-2370869 bp Feature: gene Location: 2449838-2450497 bp Feature: domain Description: TrkA Location: 2449847-2450489 bp Feature: domain Description: TrkA Location: 2449847-2450489 bp Feature: gene Location: 2450776-2450934 bp Feature: gene Location: 2451036-2452031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2451261-2451876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2451 261 -2451 876 bp Feature: gene Location: 2452152-2452331 bp Feature: gene Location: 2452488-2453579 bp Feature: domain Description: LysA Location: 2452524-2453556 bp Feature: domain Description: LysA Location: 2452524-2453556 bp Feature: gene Location: 2482374-2483606 bp Feature: domain Description: FtsW Location: 2482413-2483553 bp Feature: domain Description: FtsW Location: 248241 3-2483553 bp Feature: gene Location: 2483928-2484086 bp Feature: gene Location: 2484188-2485483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2484413-2485028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248441 3-2485028 bp Feature: domain Description: GIIM Note: maturase Location: 2485088-2485319 bp Feature: domain Description: GIIM Note: maturase Location: 2485088-248531 9 bp Feature: gene Location: 2485796-2485954 bp Feature: gene Location: 2486056-2487351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2486281-2486896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2486281 -2486896 bp Feature: domain Description: GIIM Note: maturase Location: 2486956-2487187 bp Feature: domain Description: GIIM Note: maturase Location: 2486956-24871 87 bp Feature: gene Location: 2487520-2487702 bp Feature: domain Description: COG3860 Location: 2487535-2487655 bp Feature: domain Description: COG3860 Location: 2487535-2487655 bp Feature: gene Location: 2487901-2491350 bp Feature: domain Description: PycA Location: 2487907-2491339 bp Feature: domain Description: PycA Location: 2487907-2491 339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsU (PRK00270), RVT-GII, GIIM (pfam08388), MiaB (COG0621), RsmE (COG1385), hemE (TIGR01464), HmoA (COG2329), EcsB (pfam05975), TenA (COG0819), AcrR (COG1309)
YvbJ (COG4640), DUF3139 (pfam11337), M20_ArgE_RocB (cd05654), NarK (COG2223), Coagulase (pfam08764), LysM (smart00257), PRK08581 (amidase domain-containing protein), PRK09183 (transposase/IS protein; Provisional), TrkA (COG0569), LysA (COG0019)
FtsW (COG0772), COG3860 (Uncharacterized protein, DUF2087 family ), PycA (COG1038)