myRT

myRT report for GCA_009184865.1_ASM918486v1

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Seq: CP045096.1 Streptomyces sp. GY16 chromosome, complete genome (10116136 bp)
Overview 1 RT 1: 1158385-1164644 bp 2 RT 2: 1906608-1911888 bp 3 RT 3: 2646106-2652954 bp 4 RT 4: 2665659-2671619 bp 5 RT 5: 2727300-2732619 bp 6 RT 6: 3635470-3641564 bp 7 RT 7: 4186641-4194834 bp 8 RT 8: 4241126-4248599 bp 9 RT 9: 4317913-4323261 bp 10 RT 10: 5906968-5918180 bp 11 RT 11: 6332632-6335881 bp 12 RT 12: 7540144-7546030 bp Neighborhood of RT #1 [1158385, 1164811] HTH_XRE Cupin_2 TrxB RVT-GII GIIM ligB xerC xerC xerC Neighborhood of RT #2 [1906608, 1911911] moaA RVT-GII GIIM SLC5sbd_u4 DUF485 Neighborhood of RT #3 [2646106, 2653559] NACHT dnaK RVT-GII GIIM Acetyltransf_1 MFS_Azr1_MDR_like Neighborhood of RT #4 [2665659, 2671717] LysR RVT-GII GIIM DUF4097 SMC_prok_A Neighborhood of RT #5 [2727300, 2732759] DUF305 Acetyltransf_10 RVT-GII GIIM PRK11618 AraH Neighborhood of RT #6 [3635470, 3641569] PRK06169 RVT_N RVT-GII GIIM Nterm_IS4 DDE_Tnp_1 DUF3830 Neighborhood of RT #7 [4186641, 4194878] UGPase_prokaryotic 5-FTHF_cyc-lig RVT-GII GIIM Penicil_amidase PRK05326 Neighborhood of RT #8 [4241126, 4248610] PRK01388 PRK02102 RVT-GII GIIM PRK12354 PFL1 Neighborhood of RT #9 [4317913, 4323407] DEDD_Tnp_IS110 Transposase_20 DUF820 RVT-GII GIIM AbrB Neighborhood of RT #10 [5906968, 5919016] HomoserineK_II ABC_6TM_AarD_CydD RVT_N RVT-GII GIIM MdlB RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat Rhs_assc_core Neighborhood of RT #11 [6332632, 6335964] RVT-GII GIIM HAD_BPGM_like MFS_MosC_like Neighborhood of RT #12 [7540144, 7546053] PRK08219 RVT_N RVT-GII GIIM Nterm_IS4 DDE_Tnp_1 CIMS_like Feature: gene Location: 1158385-1158960 bp Ori: QFR02397.1 Feature: domain Description: HTH_XRE Location: 1158427-1158592 bp Feature: domain Description: HTH_XRE Location: 1 1 58427-1 1 58592 bp Feature: domain Description: Cupin_2 Location: 1158712-1158910 bp Feature: domain Description: Cupin_2 Location: 1 1 5871 2-1 1 5891 0 bp Feature: gene Location: 1159078-1160034 bp Ori: QFQ95723.1 Feature: domain Description: TrxB Location: 1159108-1159993 bp Feature: domain Description: TrxB Location: 1 1 591 08-1 1 59993 bp Feature: gene Location: 1160108-1161361 bp Ori: QFQ95724.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160291-1160906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 60291 -1 1 60906 bp Feature: domain Description: GIIM Note: maturase Location: 1160966-1161191 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 60966-1 1 61 1 91 bp Feature: gene Location: 1162137-1163279 bp Feature: domain Description: ligB Location: 1162140-1163277 bp Feature: domain Description: ligB Location: 1 1 621 40-1 1 63277 bp Feature: gene Location: 1163405-1164811 bp Ori: QFR02398.1 Feature: domain Description: xerC Location: 1163432-1164134 bp Feature: domain Description: xerC Location: 1 1 63432-1 1 641 34 bp Feature: domain Description: xerC Location: 1164410-1164500 bp Feature: domain Description: xerC Location: 1 1 6441 0-1 1 64500 bp Feature: domain Description: xerC Location: 1164566-1164644 bp Feature: domain Description: xerC Location: 1 1 64566-1 1 64644 bp Feature: gene Location: 1906608-1906847 bp Feature: gene Location: 1906867-1907856 bp Ori: QFQ96320.1 Gene: moaA Feature: domain Description: moaA Location: 1906873-1907854 bp Feature: domain Description: moaA Location: 1 906873-1 907854 bp Feature: gene Location: 1908020-1909273 bp Ori: QFQ96321.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1908203-1908818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 908203-1 90881 8 bp Feature: domain Description: GIIM Note: maturase Location: 1908878-1909103 bp Feature: domain Description: GIIM Note: maturase Location: 1 908878-1 9091 03 bp Feature: gene Location: 1909933-1911558 bp Ori: QFQ96322.1 Feature: domain Description: SLC5sbd_u4 Location: 1909999-1911481 bp Feature: domain Description: SLC5sbd_u4 Location: 1 909999-1 91 1 481 bp Feature: gene Location: 1911555-1911911 bp Ori: QFQ96323.1 Feature: domain Description: DUF485 Location: 1911633-1911888 bp Feature: domain Description: DUF485 Location: 1 91 1 633-1 91 1 888 bp Feature: gene Location: 2646106-2648766 bp Ori: QFQ96875.1 Feature: domain Description: NACHT Location: 2646880-2647369 bp Feature: domain Description: NACHT Location: 2646880-2647369 bp Feature: gene Location: 2648750-2649325 bp Ori: QFQ96876.1 Feature: domain Description: dnaK Location: 2648753-2649185 bp Feature: domain Description: dnaK Location: 2648753-26491 85 bp Feature: gene Location: 2649361-2650698 bp Ori: QFQ96877.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2649568-2650264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2649568-2650264 bp Feature: domain Description: GIIM Note: maturase Location: 2650336-2650555 bp Feature: domain Description: GIIM Note: maturase Location: 2650336-2650555 bp Feature: gene Location: 2650955-2651476 bp Ori: QFQ96878.1 Feature: domain Description: Acetyltransf_1 Location: 2651111-2651396 bp Feature: domain Description: Acetyltransf_1 Location: 2651 1 1 1 -2651 396 bp Feature: gene Location: 2651442-2653559 bp Feature: domain Description: MFS_Azr1_MDR_like Location: 2651535-2652954 bp Feature: domain Description: MFS_Azr1 _MDR_like Location: 2651 535-2652954 bp Feature: gene Location: 2665659-2666585 bp Ori: QFQ96889.1 Feature: domain Description: LysR Location: 2665662-2666550 bp Feature: domain Description: LysR Location: 2665662-2666550 bp Feature: gene Location: 2666739-2667065 bp Feature: gene Location: 2667144-2668397 bp Ori: QFQ96891.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2667327-2667942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2667327-2667942 bp Feature: domain Description: GIIM Note: maturase Location: 2668002-2668227 bp Feature: domain Description: GIIM Note: maturase Location: 2668002-2668227 bp Feature: gene Location: 2669308-2670120 bp Ori: QFQ96892.1 Feature: domain Description: DUF4097 Location: 2669719-2670103 bp Feature: domain Description: DUF4097 Location: 266971 9-26701 03 bp Feature: gene Location: 2670221-2671717 bp Ori: QFQ96893.1 Feature: domain Description: SMC_prok_A Location: 2670968-2671619 bp Feature: domain Description: SMC_prok_A Location: 2670968-2671 61 9 bp Feature: gene Location: 2727300-2727989 bp Ori: QFR02512.1 Feature: domain Description: DUF305 Location: 2727501-2727969 bp Feature: domain Description: DUF305 Location: 2727501 -2727969 bp Feature: gene Location: 2728102-2728569 bp Ori: QFQ96939.1 Feature: domain Description: Acetyltransf_10 Location: 2728243-2728486 bp Feature: domain Description: Acetyltransf_1 0 Location: 2728243-2728486 bp Feature: gene Location: 2728642-2729895 bp Ori: QFQ96940.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2728825-2729440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2728825-2729440 bp Feature: domain Description: GIIM Note: maturase Location: 2729500-2729725 bp Feature: domain Description: GIIM Note: maturase Location: 2729500-2729725 bp Feature: gene Location: 2730601-2731623 bp Ori: QFQ96941.1 Gene: yjfF Feature: domain Description: PRK11618 Location: 2730676-2731615 bp Feature: domain Description: PRK1 1 61 8 Location: 2730676-2731 61 5 bp Feature: gene Location: 2731623-2732759 bp Ori: QFR02513.1 Feature: domain Description: AraH Location: 2731677-2732619 bp Feature: domain Description: AraH Location: 2731 677-273261 9 bp Feature: gene Location: 3635470-3636942 bp Ori: QFR02602.1 Feature: domain Description: PRK06169 Location: 3635482-3636841 bp Feature: domain Description: PRK061 69 Location: 3635482-3636841 bp Feature: gene Location: 3636932-3637369 bp Feature: gene Location: 3637465-3639240 bp Ori: QFQ97652.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3637549-3637786 bp Feature: domain Description: RVT_N Location: 3637549-3637786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3637846-3638503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3637846-3638503 bp Feature: domain Description: GIIM Note: maturase Location: 3638557-3638788 bp Feature: domain Description: GIIM Note: maturase Location: 3638557-3638788 bp Feature: gene Location: 3639846-3640793 bp Ori: QFQ97653.1 Feature: domain Description: Nterm_IS4 Location: 3639861-3640137 bp Feature: domain Description: Nterm_IS4 Location: 3639861 -36401 37 bp Feature: domain Description: DDE_Tnp_1 Location: 3640200-3640725 bp Feature: domain Description: DDE_Tnp_1 Location: 3640200-3640725 bp Feature: gene Location: 3641072-3641569 bp Ori: QFQ97654.1 Feature: domain Description: DUF3830 Location: 3641099-3641564 bp Feature: domain Description: DUF3830 Location: 3641 099-3641 564 bp Feature: gene Location: 4186641-4187543 bp Ori: QFQ98046.1 Gene: galU Feature: domain Description: UGPase_prokaryotic Location: 4186671-4187478 bp Feature: domain Description: UGPase_prokaryotic Location: 41 86671 -41 87478 bp Feature: gene Location: 4187647-4188252 bp Ori: QFR02659.1 Feature: domain Description: 5-FTHF_cyc-lig Location: 4187674-4188229 bp Feature: domain Description: 5-FTHF_cyc-lig Location: 41 87674-41 88229 bp Feature: gene Location: 4188330-4189583 bp Ori: QFQ98047.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4188513-4189128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 8851 3-41 891 28 bp Feature: domain Description: GIIM Note: maturase Location: 4189188-4189413 bp Feature: domain Description: GIIM Note: maturase Location: 41 891 88-41 8941 3 bp Feature: gene Location: 4190231-4193029 bp Ori: QFQ98048.1 Feature: domain Description: Penicil_amidase Location: 4190441-4192994 bp Feature: domain Description: Penicil_amidase Location: 41 90441 -41 92994 bp Feature: gene Location: 4193352-4194878 bp Ori: QFR02660.1 Feature: domain Description: PRK05326 Location: 4193364-4194834 bp Feature: domain Description: PRK05326 Location: 41 93364-41 94834 bp Feature: gene Location: 4241126-4242355 bp Ori: QFQ98092.1 Feature: domain Description: PRK01388 Location: 4241132-4242347 bp Feature: domain Description: PRK01 388 Location: 4241 1 32-4242347 bp Feature: gene Location: 4242377-4243387 bp Ori: QFQ98093.1 Gene: argF Feature: domain Description: PRK02102 Location: 4242380-4243373 bp Feature: domain Description: PRK021 02 Location: 4242380-4243373 bp Feature: gene Location: 4243491-4244744 bp Ori: QFQ98094.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4243674-4244289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4243674-4244289 bp Feature: domain Description: GIIM Note: maturase Location: 4244349-4244574 bp Feature: domain Description: GIIM Note: maturase Location: 4244349-4244574 bp Feature: gene Location: 4245323-4246231 bp Ori: QFQ98095.1 Feature: domain Description: PRK12354 Location: 4245329-4246217 bp Feature: domain Description: PRK1 2354 Location: 4245329-424621 7 bp Feature: gene Location: 4246352-4248610 bp Ori: QFQ98096.1 Gene: pflB Feature: domain Description: PFL1 Location: 4246394-4248599 bp Feature: domain Description: PFL1 Location: 4246394-4248599 bp Feature: gene Location: 4317913-4319136 bp Ori: QFQ98143.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 4317946-4318411 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 431 7946-431 841 1 bp Feature: domain Description: Transposase_20 Location: 4318735-4318993 bp Feature: domain Description: Transposase_20 Location: 431 8735-431 8993 bp Feature: gene Location: 4319506-4320072 bp Ori: QFQ98144.1 Feature: domain Description: DUF820 Location: 4319599-4319962 bp Feature: domain Description: DUF820 Location: 431 9599-431 9962 bp Feature: gene Location: 4320881-4322134 bp Ori: QFQ98145.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4321064-4321679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4321 064-4321 679 bp Feature: domain Description: GIIM Note: maturase Location: 4321739-4321964 bp Feature: domain Description: GIIM Note: maturase Location: 4321 739-4321 964 bp Feature: gene Location: 4322774-4323091 bp Feature: gene Location: 4323114-4323407 bp Ori: QFQ98147.1 Feature: domain Description: AbrB Location: 4323117-4323261 bp Feature: domain Description: AbrB Location: 43231 1 7-4323261 bp Feature: gene Location: 5906968-5908032 bp Ori: QFQ99300.1 Feature: domain Description: HomoserineK_II Location: 5907028-5907922 bp Feature: domain Description: HomoserineK_II Location: 5907028-5907922 bp Feature: gene Location: 5908243-5908734 bp Feature: domain Description: ABC_6TM_AarD_CydD Location: 5908450-5908702 bp Feature: domain Description: ABC_6TM_AarD_CydD Location: 5908450-5908702 bp Feature: gene Location: 5909412-5911187 bp Ori: QFQ99301.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5909496-5909733 bp Feature: domain Description: RVT_N Location: 5909496-5909733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5909793-5910450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5909793-591 0450 bp Feature: domain Description: GIIM Note: maturase Location: 5910504-5910735 bp Feature: domain Description: GIIM Note: maturase Location: 591 0504-591 0735 bp Feature: gene Location: 5911184-5912737 bp Feature: domain Description: MdlB Location: 5911607-5912663 bp Feature: domain Description: MdlB Location: 591 1 607-591 2663 bp Feature: gene Location: 5913503-5919016 bp Ori: QFQ99302.1 Feature: domain Description: RHS_repeat Location: 5914751-5914859 bp Feature: domain Description: RHS_repeat Location: 591 4751 -591 4859 bp Feature: domain Description: RHS_repeat Location: 5914883-5914973 bp Feature: domain Description: RHS_repeat Location: 591 4883-591 4973 bp Feature: domain Description: RHS_repeat Location: 5915060-5915123 bp Feature: domain Description: RHS_repeat Location: 591 5060-591 51 23 bp Feature: domain Description: RHS_repeat Location: 5915255-5915348 bp Feature: domain Description: RHS_repeat Location: 591 5255-591 5348 bp Feature: domain Description: RHS_repeat Location: 5915372-5915426 bp Feature: domain Description: RHS_repeat Location: 591 5372-591 5426 bp Feature: domain Description: RHS_repeat Location: 5915435-5915528 bp Feature: domain Description: RHS_repeat Location: 591 5435-591 5528 bp Feature: domain Description: RHS_repeat Location: 5915552-5915660 bp Feature: domain Description: RHS_repeat Location: 591 5552-591 5660 bp Feature: domain Description: RHS_repeat Location: 5915675-5915753 bp Feature: domain Description: RHS_repeat Location: 591 5675-591 5753 bp Feature: domain Description: RHS_repeat Location: 5915768-5915849 bp Feature: domain Description: RHS_repeat Location: 591 5768-591 5849 bp Feature: domain Description: RHS_repeat Location: 5915894-5916002 bp Feature: domain Description: RHS_repeat Location: 591 5894-591 6002 bp Feature: domain Description: RHS_repeat Location: 5916128-5916221 bp Feature: domain Description: RHS_repeat Location: 591 61 28-591 6221 bp Feature: domain Description: RHS_repeat Location: 5916236-5916341 bp Feature: domain Description: RHS_repeat Location: 591 6236-591 6341 bp Feature: domain Description: RHS_repeat Location: 5916362-5916497 bp Feature: domain Description: RHS_repeat Location: 591 6362-591 6497 bp Feature: domain Description: RHS_repeat Location: 5916515-5916617 bp Feature: domain Description: RHS_repeat Location: 591 651 5-591 661 7 bp Feature: domain Description: RHS_repeat Location: 5916641-5916743 bp Feature: domain Description: RHS_repeat Location: 591 6641 -591 6743 bp Feature: domain Description: RHS_repeat Location: 5916830-5916941 bp Feature: domain Description: RHS_repeat Location: 591 6830-591 6941 bp Feature: domain Description: RHS_repeat Location: 5916956-5917064 bp Feature: domain Description: RHS_repeat Location: 591 6956-591 7064 bp Feature: domain Description: RHS_repeat Location: 5917085-5917184 bp Feature: domain Description: RHS_repeat Location: 591 7085-591 71 84 bp Feature: domain Description: RHS_repeat Location: 5917214-5917298 bp Feature: domain Description: RHS_repeat Location: 591 721 4-591 7298 bp Feature: domain Description: RHS_repeat Location: 5917322-5917388 bp Feature: domain Description: RHS_repeat Location: 591 7322-591 7388 bp Feature: domain Description: RHS_repeat Location: 5917499-5917631 bp Feature: domain Description: RHS_repeat Location: 591 7499-591 7631 bp Feature: domain Description: Rhs_assc_core Location: 5917931-5918180 bp Feature: domain Description: Rhs_assc_core Location: 591 7931 -591 81 80 bp Feature: gene Location: 6332632-6333885 bp Ori: QFQ99584.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6332815-6333430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633281 5-6333430 bp Feature: domain Description: GIIM Note: maturase Location: 6333490-6333715 bp Feature: domain Description: GIIM Note: maturase Location: 6333490-633371 5 bp Feature: gene Location: 6334010-6334654 bp Ori: QFQ99585.1 Feature: domain Description: HAD_BPGM_like Location: 6334022-6334577 bp Feature: domain Description: HAD_BPGM_like Location: 6334022-6334577 bp Feature: gene Location: 6334732-6335964 bp Ori: QFQ99586.1 Feature: domain Description: MFS_MosC_like Location: 6334759-6335881 bp Feature: domain Description: MFS_MosC_like Location: 6334759-6335881 bp Feature: gene Location: 7540144-7540839 bp Ori: QFR00496.1 Feature: domain Description: PRK08219 Location: 7540147-7540828 bp Feature: domain Description: PRK0821 9 Location: 75401 47-7540828 bp Feature: gene Location: 7540902-7541339 bp Feature: gene Location: 7541435-7543210 bp Ori: QFR00498.1 Gene: ltrA Feature: domain Description: RVT_N Location: 7541519-7541756 bp Feature: domain Description: RVT_N Location: 7541 51 9-7541 756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7541816-7542473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7541 81 6-7542473 bp Feature: domain Description: GIIM Note: maturase Location: 7542527-7542758 bp Feature: domain Description: GIIM Note: maturase Location: 7542527-7542758 bp Feature: gene Location: 7543816-7544763 bp Ori: QFR00499.1 Feature: domain Description: Nterm_IS4 Location: 7543831-7544107 bp Feature: domain Description: Nterm_IS4 Location: 7543831 -75441 07 bp Feature: domain Description: DDE_Tnp_1 Location: 7544170-7544695 bp Feature: domain Description: DDE_Tnp_1 Location: 75441 70-7544695 bp Feature: gene Location: 7545037-7546053 bp Ori: QFR00500.1 Feature: domain Description: CIMS_like Location: 7545067-7546030 bp Feature: domain Description: CIMS_like Location: 7545067-7546030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Cupin_2 (pfam07883), TrxB (COG0492), RVT-GII, GIIM (pfam08388), ligB (PRK08097), xerC (PRK01287), moaA (TIGR02666), SLC5sbd_u4 (cd11480), DUF485 (pfam04341)
NACHT (pfam05729), dnaK (PRK00290), Acetyltransf_1 (pfam00583), MFS_Azr1_MDR_like (cd17502), LysR (COG0583), DUF4097 (pfam13349), SMC_prok_A (TIGR02169), DUF305 (pfam03713), Acetyltransf_10 (pfam13673), PRK11618 (inner membrane ABC transporter permease protein YjfF; Provisional)
AraH (COG1172), PRK06169 (putative amidase; Provisional), RVT_N (pfam13655), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), DUF3830 (pfam12903), UGPase_prokaryotic (cd02541), 5-FTHF_cyc-lig (pfam01812), Penicil_amidase (pfam01804), PRK05326 (potassium/proton antiporter)
PRK01388 (arginine deiminase; Provisional), PRK02102 (ornithine carbamoyltransferase; Validated), PRK12354 (carbamate kinase; Reviewed), PFL1 (cd01678), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), DUF820, AbrB (pfam05145), HomoserineK_II (cd05153), ABC_6TM_AarD_CydD (cd18584)
MdlB (COG1132), RHS_repeat (pfam05593), Rhs_assc_core (TIGR03696), HAD_BPGM_like (cd07526), MFS_MosC_like (cd17393), PRK08219 (SDR family oxidoreductase), CIMS_like (cd03310)