myRT

myRT report for GCA_009193295.2_ASM919329v2

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Seq: CP059973.1 Bacteroides sp. HF-5141 chromosome, complete genome (5760088 bp)
Overview 1 RT 1: 2105316-2112635 bp 2 RT 2: 2632292-2639726 bp 3 RT 3: 2921622-2934039 bp 4 RT 4: 3905182-3909892 bp 5 RT 5: 4889617-4893086 bp Neighborhood of RT #1 [2105316, 2112841] GH18_EndoS-like DUF1735 Laminin_G_3 RVT-GII GIIM COG3943 VirE_N COG5545 Neighborhood of RT #2 [2632292, 2639758] DUF5123 DUF5123 Pgu1 Beta_helix RVT-GII GIIM DDE_Tnp_1_6 COG3666 Neighborhood of RT #3 [2921622, 2934170] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Neighborhood of RT #4 [3905182, 3909892] AAT_like Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-Retrons Neighborhood of RT #5 [4889617, 4893112] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-Retrons HTH_17 Feature: gene Location: 2105316-2106437 bp Feature: domain Description: GH18_EndoS-like Location: 2105508-2106360 bp Feature: domain Description: GH1 8_EndoS-like Location: 21 05508-21 06360 bp Feature: gene Location: 2106470-2107609 bp Feature: domain Description: DUF1735 Location: 2106563-2106902 bp Feature: domain Description: DUF1 735 Location: 21 06563-21 06902 bp Feature: domain Description: Laminin_G_3 Location: 2106983-2107433 bp Feature: domain Description: Laminin_G_3 Location: 21 06983-21 07433 bp Feature: gene Location: 2108184-2109719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2108526-2109144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 08526-21 091 44 bp Feature: domain Description: GIIM Note: maturase Location: 2109198-2109429 bp Feature: domain Description: GIIM Note: maturase Location: 21 091 98-21 09429 bp Feature: gene Location: 2109912-2110562 bp Feature: domain Description: COG3943 Location: 2109984-2110359 bp Feature: domain Description: COG3943 Location: 21 09984-21 1 0359 bp Feature: gene Location: 2110757-2112841 bp Feature: domain Description: VirE_N Location: 2110919-2111312 bp Feature: domain Description: VirE_N Location: 21 1 091 9-21 1 1 31 2 bp Feature: domain Description: COG5545 Location: 2111939-2112635 bp Feature: domain Description: COG5545 Location: 21 1 1 939-21 1 2635 bp Feature: gene Location: 2632292-2633932 bp Feature: domain Description: DUF5123 Location: 2633261-2633396 bp Feature: domain Description: DUF51 23 Location: 2633261 -2633396 bp Feature: domain Description: DUF5123 Location: 2633498-2633924 bp Feature: domain Description: DUF51 23 Location: 2633498-2633924 bp Feature: gene Location: 2634053-2635630 bp Feature: domain Description: Pgu1 Location: 2634215-2635250 bp Feature: domain Description: Pgu1 Location: 263421 5-2635250 bp Feature: domain Description: Beta_helix Location: 2635430-2635580 bp Feature: domain Description: Beta_helix Location: 2635430-2635580 bp Feature: gene Location: 2636199-2637605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2636541-2637159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2636541 -26371 59 bp Feature: domain Description: GIIM Note: maturase Location: 2637213-2637444 bp Feature: domain Description: GIIM Note: maturase Location: 263721 3-2637444 bp Feature: gene Location: 2638096-2639406 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2638903-2639278 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 2638903-2639278 bp Feature: gene Location: 2639276-2639758 bp Feature: domain Description: COG3666 Location: 2639291-2639726 bp Feature: domain Description: COG3666 Location: 2639291 -2639726 bp Feature: gene Location: 2921622-2921795 bp Feature: gene Location: 2922731-2924938 bp Feature: gene Location: 2925145-2926275 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2925466-2926012 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2925466-292601 2 bp Feature: gene Location: 2926305-2932274 bp Feature: domain Description: DUF4011 Location: 2927535-2928048 bp Feature: domain Description: DUF401 1 Location: 2927535-2928048 bp Feature: domain Description: DEXXQc_SF1 Location: 2928387-2929011 bp Feature: domain Description: DEXXQc_SF1 Location: 2928387-292901 1 bp Feature: domain Description: DEXXQc_SF1 Location: 2929815-2930574 bp Feature: domain Description: DEXXQc_SF1 Location: 292981 5-2930574 bp Feature: domain Description: TIGR00376 Location: 2930703-2931093 bp Feature: domain Description: TIGR00376 Location: 2930703-2931 093 bp Feature: domain Description: MTES_1575 Location: 2931246-2931531 bp Feature: domain Description: MTES_1 575 Location: 2931 246-2931 531 bp Feature: domain Description: DUF3320 Location: 2931789-2931924 bp Feature: domain Description: DUF3320 Location: 2931 789-2931 924 bp Feature: gene Location: 2932371-2934170 bp Feature: domain Description: rpsA Location: 2932440-2934039 bp Feature: domain Description: rpsA Location: 2932440-2934039 bp Feature: gene Location: 3905182-3906498 bp Feature: domain Description: AAT_like Location: 3905323-3906466 bp Feature: domain Description: AAT_like Location: 3905323-3906466 bp Feature: gene Location: 3906975-3908198 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3907014-3907275 bp Feature: domain Description: Arm-DNA-bind_5 Location: 390701 4-3907275 bp Feature: domain Description: Phage_int_SAM_5 Location: 3907311-3907617 bp Feature: domain Description: Phage_int_SAM_5 Location: 390731 1 -390761 7 bp Feature: domain Description: INTN1_C_like Location: 3907668-3908157 bp Feature: domain Description: INTN1 _C_like Location: 3907668-39081 57 bp Feature: gene Location: 3908207-3909055 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3908366-3908888 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3908366-3908888 bp Feature: gene Location: 3909079-3909348 bp Feature: gene Location: 3909677-3909892 bp Feature: gene Location: 4889617-4889805 bp Feature: gene Location: 4889894-4891117 bp Feature: domain Description: Arm-DNA-bind_5 Location: 4889933-4890194 bp Feature: domain Description: Arm-DNA-bind_5 Location: 4889933-48901 94 bp Feature: domain Description: Phage_int_SAM_5 Location: 4890230-4890536 bp Feature: domain Description: Phage_int_SAM_5 Location: 4890230-4890536 bp Feature: domain Description: INTN1_C_like Location: 4890587-4891076 bp Feature: domain Description: INTN1 _C_like Location: 4890587-4891 076 bp Feature: gene Location: 4891126-4891974 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4891285-4891807 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4891 285-4891 807 bp Feature: gene Location: 4891998-4892267 bp Feature: gene Location: 4892819-4893112 bp Feature: domain Description: HTH_17 Location: 4892942-4893086 bp Feature: domain Description: HTH_1 7 Location: 4892942-4893086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GH18_EndoS-like (cd06542), DUF1735 (pfam08522), Laminin_G_3 (pfam13385), RVT-GII, GIIM (pfam08388), COG3943 (Uncharacterized conserved protein ), VirE_N (pfam08800), COG5545 (Predicted P-loop ATPase and inactivated derivatives ), DUF5123 (pfam17161), Pgu1 (COG5434)
Beta_helix (pfam13229), DDE_Tnp_1_6 (pfam13751), COG3666 (Transposase ), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)
AAT_like (cd00609), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728)