myRT

myRT report for GCA_009193325.2_ASM919332v2

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Seq: CP059856.1 Bacteroides sp. HF-5287 chromosome, complete genome (5244518 bp)
Overview 1 RT 1: 47025-49752 bp 2 RT 2: 671894-678822 bp 3 RT 3: 869244-874640 bp 4 RT 4: 2549291-2559974 bp 5 RT 5: 2966521-2973969 bp 6 RT 6: 3398059-3404092 bp 7 RT 7: 3835269-3840461 bp 8 RT 8: 4501146-4503966 bp Neighborhood of RT #1 [47025, 49752] RVT-DGRs Neighborhood of RT #2 [671894, 679562] RVT-DGRs ThyA ThyA MethyltransfD12 RVT_N RVT-GII GIIM YWFCY Neighborhood of RT #3 [869244, 874933] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Neighborhood of RT #4 [2549291, 2560045] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Neighborhood of RT #5 [2966521, 2973989] dnaG RVT-UG24 AbiGi AbiGi Tra8 Neighborhood of RT #6 [3398059, 3404092] LacZ Ig_GlcNase SusD RVT-GII GIIM RVT_N Neighborhood of RT #7 [3835269, 3840472] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Neighborhood of RT #8 [4501146, 4503966] RVT-DGRs Feature: gene Location: 47025-47267 bp Feature: gene Location: 47447-47932 bp Feature: gene Location: 47929-49233 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48142-48736 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 481 42-48736 bp Feature: gene Location: 49335-49553 bp Feature: gene Location: 49612-49752 bp Feature: gene Location: 671894-672127 bp Feature: gene Location: 672149-672406 bp Feature: gene Location: 672503-673804 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 672716-673313 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 67271 6-67331 3 bp Feature: gene Location: 673801-674286 bp Feature: gene Location: 674472-674714 bp Feature: gene Location: 674781-675419 bp Feature: domain Description: ThyA Location: 674784-675021 bp Feature: domain Description: ThyA Location: 674784-675021 bp Feature: domain Description: ThyA Location: 675078-675381 bp Feature: domain Description: ThyA Location: 675078-675381 bp Feature: gene Location: 675416-676276 bp Feature: domain Description: MethyltransfD12 Location: 675452-676043 bp Feature: domain Description: MethyltransfD1 2 Location: 675452-676043 bp Feature: gene Location: 676363-678003 bp Feature: domain Description: RVT_N Location: 676417-676660 bp Feature: domain Description: RVT_N Location: 67641 7-676660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676705-677353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676705-677353 bp Feature: domain Description: GIIM Note: maturase Location: 677407-677638 bp Feature: domain Description: GIIM Note: maturase Location: 677407-677638 bp Feature: gene Location: 678319-678468 bp Feature: gene Location: 678639-679562 bp Feature: domain Description: YWFCY Location: 678648-678822 bp Feature: domain Description: YWFCY Location: 678648-678822 bp Feature: gene Location: 869244-870491 bp Feature: domain Description: Relaxase Location: 869433-870024 bp Feature: domain Description: Relaxase Location: 869433-870024 bp Feature: domain Description: Relaxase Location: 870045-870261 bp Feature: domain Description: Relaxase Location: 870045-870261 bp Feature: gene Location: 870509-871432 bp Feature: domain Description: YWFCY Location: 870515-870692 bp Feature: domain Description: YWFCY Location: 87051 5-870692 bp Feature: gene Location: 872069-873406 bp Feature: domain Description: RVT_N Location: 872123-872366 bp Feature: domain Description: RVT_N Location: 8721 23-872366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872411-873059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87241 1 -873059 bp Feature: domain Description: GIIM Note: maturase Location: 873113-873344 bp Feature: domain Description: GIIM Note: maturase Location: 8731 1 3-873344 bp Feature: gene Location: 873403-873720 bp Feature: gene Location: 873725-874933 bp Feature: domain Description: TraG-D_C Location: 874307-874640 bp Feature: domain Description: TraG-D_C Location: 874307-874640 bp Feature: gene Location: 2549291-2551093 bp Feature: domain Description: rpsA Location: 2549360-2550977 bp Feature: domain Description: rpsA Location: 2549360-2550977 bp Feature: gene Location: 2551190-2557147 bp Feature: domain Description: DUF4011 Location: 2552420-2552933 bp Feature: domain Description: DUF401 1 Location: 2552420-2552933 bp Feature: domain Description: DEXXQc_SF1 Location: 2553272-2554136 bp Feature: domain Description: DEXXQc_SF1 Location: 2553272-25541 36 bp Feature: domain Description: DEXXQc_SF1 Location: 2554700-2555459 bp Feature: domain Description: DEXXQc_SF1 Location: 2554700-2555459 bp Feature: domain Description: TIGR00376 Location: 2555588-2555978 bp Feature: domain Description: TIGR00376 Location: 2555588-2555978 bp Feature: domain Description: MTES_1575 Location: 2556131-2556416 bp Feature: domain Description: MTES_1 575 Location: 25561 31 -255641 6 bp Feature: domain Description: DUF3320 Location: 2556656-2556797 bp Feature: domain Description: DUF3320 Location: 2556656-2556797 bp Feature: gene Location: 2557149-2558279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2557470-2558013 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2557470-255801 3 bp Feature: gene Location: 2558619-2558786 bp Feature: gene Location: 2558813-2560045 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2558840-2559095 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2558840-2559095 bp Feature: domain Description: Phage_int_SAM_5 Location: 2559137-2559446 bp Feature: domain Description: Phage_int_SAM_5 Location: 25591 37-2559446 bp Feature: domain Description: INTN1_C_like Location: 2559494-2559974 bp Feature: domain Description: INTN1 _C_like Location: 2559494-2559974 bp Feature: gene Location: 2966521-2967558 bp Feature: domain Description: dnaG Location: 2966611-2967508 bp Feature: domain Description: dnaG Location: 296661 1 -2967508 bp Feature: gene Location: 2967561-2968391 bp Feature: gene Location: 2968403-2972152 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 2969036-2969567 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 2969036-2969567 bp Feature: gene Location: 2972145-2972858 bp Feature: domain Description: AbiGi Location: 2972259-2972445 bp Feature: domain Description: AbiGi Location: 2972259-2972445 bp Feature: domain Description: AbiGi Location: 2972541-2972730 bp Feature: domain Description: AbiGi Location: 2972541 -2972730 bp Feature: gene Location: 2973006-2973989 bp Feature: domain Description: Tra8 Location: 2973012-2973969 bp Feature: domain Description: Tra8 Location: 297301 2-2973969 bp Feature: gene Location: 3398059-3400665 bp Feature: domain Description: LacZ Location: 3398224-3399460 bp Feature: domain Description: LacZ Location: 3398224-3399460 bp Feature: domain Description: Ig_GlcNase Location: 3400321-3400621 bp Feature: domain Description: Ig_GlcNase Location: 3400321 -3400621 bp Feature: gene Location: 3400694-3402004 bp Feature: domain Description: SusD Location: 3400778-3401867 bp Feature: domain Description: SusD Location: 3400778-3401 867 bp Feature: gene Location: 3402173-3403519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3402209-3402857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3402209-3402857 bp Feature: domain Description: GIIM Note: maturase Location: 3402911-3403142 bp Feature: domain Description: GIIM Note: maturase Location: 340291 1 -34031 42 bp Feature: gene Location: 3403526-3403822 bp Feature: domain Description: RVT_N Location: 3403580-3403802 bp Feature: domain Description: RVT_N Location: 3403580-3403802 bp Feature: gene Location: 3403904-3404092 bp Feature: gene Location: 3835269-3836207 bp Feature: domain Description: Bac_Flav_CT_G Location: 3835272-3836193 bp Feature: domain Description: Bac_Flav_CT_G Location: 3835272-38361 93 bp Feature: gene Location: 3836386-3836535 bp Feature: gene Location: 3836743-3838452 bp Feature: domain Description: RVT_N Location: 3836845-3837088 bp Feature: domain Description: RVT_N Location: 3836845-3837088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3837133-3837781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38371 33-3837781 bp Feature: domain Description: GIIM Note: maturase Location: 3837835-3838066 bp Feature: domain Description: GIIM Note: maturase Location: 3837835-3838066 bp Feature: gene Location: 3838449-3840143 bp Feature: domain Description: Bac_Flav_CT_G Location: 3838569-3840135 bp Feature: domain Description: Bac_Flav_CT_G Location: 3838569-38401 35 bp Feature: gene Location: 3840158-3840472 bp Feature: domain Description: DUF3876 Location: 3840212-3840461 bp Feature: domain Description: DUF3876 Location: 384021 2-3840461 bp Feature: gene Location: 4501146-4501388 bp Feature: gene Location: 4501574-4502059 bp Feature: gene Location: 4502056-4503357 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4502269-4502866 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4502269-4502866 bp Feature: gene Location: 4503454-4503711 bp Feature: gene Location: 4503733-4503966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, ThyA (COG0207), MethyltransfD12 (pfam02086), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293), Relaxase (pfam03432), TraG-D_C (pfam12696), rpsA (TIGR00717)
DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), dnaG (TIGR01391)
RVT-UG24, AbiGi (pfam10899), Tra8 (COG2826), LacZ (COG3250), Ig_GlcNase (pfam18368), SusD (NF033071), Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992)