myRT

myRT report for GCA_009363815.1_ASM936381v1

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Seq: CP045416.1 Pseudomonas sp. THAF7b chromosome, complete genome (4522538 bp)
Overview 1 RT 1: 667587-673497 bp 2 RT 2: 1190692-1197020 bp 3 RT 3: 2201980-2210692 bp 4 RT 4: 2981454-2985996 bp 5 RT 5: 3649908-3656655 bp Neighborhood of RT #1 [667587, 673497] 2A0601 IS5 RVT-GII GIIM Neighborhood of RT #2 [1190692, 1197028] propionate_PrpR IS5 RVT-GII GIIM IS5 PFDH_like Neighborhood of RT #3 [2201980, 2210712] SLC-NCS1sbd_CobB-like Porin_O_P RVT-GII GIIM Hydantoinase_B HyuA Neighborhood of RT #4 [2981454, 2986043] bPH_2 PinE RVT-G2L4 DUF4326 DUF488 Neighborhood of RT #5 [3649908, 3656663] cztR_silR_copR IS5 RVT-GII GIIM IS5 copper_res_A Feature: gene Location: 667587-670727 bp Ori: QFU10992.1 Gene: czcA1 Feature: domain Description: 2A0601 Location: 667590-670713 bp Feature: domain Description: 2A0601 Location: 667590-67071 3 bp Feature: gene Location: 671014-671454 bp Ori: QFU10993.1 Feature: domain Description: IS5 Location: 671020-671422 bp Feature: domain Description: IS5 Location: 671 020-671 422 bp Feature: gene Location: 671545-672636 bp Ori: QFU10994.1 Gene: ltrA1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671548-672130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671 548-6721 30 bp Feature: domain Description: GIIM Note: maturase Location: 672181-672415 bp Feature: domain Description: GIIM Note: maturase Location: 6721 81 -67241 5 bp Feature: gene Location: 672608-673195 bp Feature: gene Location: 673162-673497 bp Feature: gene Location: 1190692-1192647 bp Ori: QFU11496.1 Gene: rocR Feature: domain Description: propionate_PrpR Location: 1190752-1192627 bp Feature: domain Description: propionate_PrpR Location: 1 1 90752-1 1 92627 bp Feature: gene Location: 1192741-1193280 bp Ori: QFU11497.1 Feature: domain Description: IS5 Location: 1192930-1193254 bp Feature: domain Description: IS5 Location: 1 1 92930-1 1 93254 bp Feature: gene Location: 1193773-1195041 bp Ori: QFU11498.1 Gene: ltrA2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1193986-1194643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 93986-1 1 94643 bp Feature: domain Description: GIIM Note: maturase Location: 1194721-1194943 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 94721 -1 1 94943 bp Feature: gene Location: 1195038-1195571 bp Ori: QFU11499.1 Feature: domain Description: IS5 Location: 1195101-1195539 bp Feature: domain Description: IS5 Location: 1 1 951 01 -1 1 95539 bp Feature: gene Location: 1195889-1197028 bp Ori: QFU11500.1 Gene: fdhA2 Feature: domain Description: PFDH_like Location: 1195892-1197020 bp Feature: domain Description: PFDH_like Location: 1 1 95892-1 1 97020 bp Feature: gene Location: 2201980-2203341 bp Ori: QFU12443.1 Feature: domain Description: SLC-NCS1sbd_CobB-like Location: 2202037-2203306 bp Feature: domain Description: SLC-NCS1 sbd_CobB-like Location: 2202037-2203306 bp Feature: gene Location: 2203489-2204667 bp Ori: QFU12444.1 Feature: domain Description: Porin_O_P Location: 2203714-2204551 bp Feature: domain Description: Porin_O_P Location: 220371 4-2204551 bp Feature: gene Location: 2205263-2206540 bp Ori: QFU12445.1 Gene: ltrA3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2205524-2206139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2205524-22061 39 bp Feature: domain Description: GIIM Note: maturase Location: 2206193-2206421 bp Feature: domain Description: GIIM Note: maturase Location: 22061 93-2206421 bp Feature: gene Location: 2206841-2208586 bp Ori: QFU12446.1 Gene: apc1 Feature: domain Description: Hydantoinase_B Location: 2206856-2208440 bp Feature: domain Description: Hydantoinase_B Location: 2206856-2208440 bp Feature: gene Location: 2208622-2210712 bp Ori: QFU12447.1 Gene: apc2 Feature: domain Description: HyuA Location: 2208637-2210692 bp Feature: domain Description: HyuA Location: 2208637-221 0692 bp Feature: gene Location: 2981454-2981888 bp Ori: QFU13140.1 Feature: domain Description: bPH_2 Location: 2981613-2981817 bp Feature: domain Description: bPH_2 Location: 2981 61 3-2981 81 7 bp Feature: gene Location: 2982093-2982668 bp Ori: QFU13141.1 Gene: pinR Feature: domain Description: PinE Location: 2982102-2982657 bp Feature: domain Description: PinE Location: 29821 02-2982657 bp Feature: gene Location: 2982763-2983998 bp Ori: QFU13142.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 2982982-2983570 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 2982982-2983570 bp Feature: gene Location: 2985010-2985603 bp Ori: QFU13143.1 Feature: domain Description: DUF4326 Location: 2985337-2985571 bp Feature: domain Description: DUF4326 Location: 2985337-2985571 bp Feature: gene Location: 2985600-2986043 bp Ori: QFU13144.1 Feature: domain Description: DUF488 Location: 2985639-2985996 bp Feature: domain Description: DUF488 Location: 2985639-2985996 bp Feature: gene Location: 3649908-3650588 bp Ori: QFU13748.1 Gene: copR3 Feature: domain Description: cztR_silR_copR Location: 3649917-3650568 bp Feature: domain Description: cztR_silR_copR Location: 364991 7-3650568 bp Feature: gene Location: 3650919-3651452 bp Ori: QFU13749.1 Feature: domain Description: IS5 Location: 3650982-3651423 bp Feature: domain Description: IS5 Location: 3650982-3651 423 bp Feature: gene Location: 3651449-3652717 bp Ori: QFU13750.1 Gene: ltrA4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3651662-3652319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3651 662-365231 9 bp Feature: domain Description: GIIM Note: maturase Location: 3652397-3652619 bp Feature: domain Description: GIIM Note: maturase Location: 3652397-365261 9 bp Feature: gene Location: 3653210-3653749 bp Ori: QFU13751.1 Feature: domain Description: IS5 Location: 3653399-3653723 bp Feature: domain Description: IS5 Location: 3653399-3653723 bp Feature: gene Location: 3654822-3656663 bp Ori: QFU13752.1 Gene: copA6 Feature: domain Description: copper_res_A Location: 3654828-3656655 bp Feature: domain Description: copper_res_A Location: 3654828-3656655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2A0601 (TIGR00914), IS5 (COG3039), RVT-GII, GIIM (pfam08388), propionate_PrpR (TIGR02329), PFDH_like (cd08282), SLC-NCS1sbd_CobB-like (cd11484), Porin_O_P (pfam07396), Hydantoinase_B (pfam02538), HyuA (COG0145)
bPH_2 (pfam03703), PinE (COG1961), RVT-G2L4, DUF4326 (pfam14216), DUF488 (pfam04343), cztR_silR_copR (TIGR01387), copper_res_A (TIGR01480)