myRT

myRT report for GCA_009372195.1_ASM937219v1

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Seq: CP045227.1 Nostoc sphaeroides CCNUC1 chromosome Gxm2, complete sequence (2342398 bp)
Overview 1 RT 1: 1623724-1626716 bp 2 RT 2: 1963433-1967066 bp 3 RT 3: 2233091-2241126 bp Neighborhood of RT #1 [1623724, 1626745] YfmG Avd_like RVT-DGRs TIGR02436 Neighborhood of RT #2 [1963433, 1967066] RVT_N RVT-GII GIIM HNH Neighborhood of RT #3 [2233091, 2241126] DUF1998 HELICc RVT_N RVT-GII GIIM HNH Feature: gene Location: 1623724-1624581 bp Ori: QFS51274.1 Feature: domain Description: YfmG Location: 1623784-1624561 bp Feature: domain Description: YfmG Location: 1 623784-1 624561 bp Feature: gene Location: 1624855-1625148 bp Ori: QFS51275.1 Feature: domain Description: Avd_like Location: 1624861-1625128 bp Feature: domain Description: Avd_like Location: 1 624861 -1 6251 28 bp Feature: gene Location: 1625170-1626039 bp Ori: QFS51276.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1625380-1625929 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 625380-1 625929 bp Feature: gene Location: 1626120-1626329 bp Feature: gene Location: 1626377-1626745 bp Ori: QFS51278.1 Feature: domain Description: TIGR02436 Location: 1626392-1626716 bp Feature: domain Description: TIGR02436 Location: 1 626392-1 62671 6 bp Feature: gene Location: 1963433-1963858 bp Feature: gene Location: 1963913-1964110 bp Feature: gene Location: 1964129-1966045 bp Ori: QFS51776.1 Feature: domain Description: RVT_N Location: 1964213-1964459 bp Feature: domain Description: RVT_N Location: 1 96421 3-1 964459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1964501-1965197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 964501 -1 9651 97 bp Feature: domain Description: GIIM Note: maturase Location: 1965302-1965512 bp Feature: domain Description: GIIM Note: maturase Location: 1 965302-1 96551 2 bp Feature: domain Description: HNH Note: nucleases Location: 1965764-1965896 bp Feature: domain Description: HNH Note: nucleases Location: 1 965764-1 965896 bp Feature: gene Location: 1966417-1966545 bp Feature: gene Location: 1966860-1967066 bp Feature: gene Location: 2233091-2234977 bp Ori: QFS52096.1 Feature: domain Description: DUF1998 Location: 2234570-2234864 bp Feature: domain Description: DUF1 998 Location: 2234570-2234864 bp Feature: gene Location: 2234977-2238234 bp Ori: QFS52097.1 Feature: domain Description: HELICc Location: 2237506-2237674 bp Feature: domain Description: HELICc Location: 2237506-2237674 bp Feature: gene Location: 2238387-2240303 bp Ori: QFS52098.1 Feature: domain Description: RVT_N Location: 2238471-2238717 bp Feature: domain Description: RVT_N Location: 2238471 -223871 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2238759-2239455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2238759-2239455 bp Feature: domain Description: GIIM Note: maturase Location: 2239560-2239770 bp Feature: domain Description: GIIM Note: maturase Location: 2239560-2239770 bp Feature: domain Description: HNH Note: nucleases Location: 2240022-2240154 bp Feature: domain Description: HNH Note: nucleases Location: 2240022-22401 54 bp Feature: gene Location: 2240675-2240803 bp Feature: gene Location: 2240971-2241126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, TIGR02436 (four helix bundle protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), DUF1998 (pfam09369), HELICc (smart00490)

Seq: CP045226.1 Nostoc sphaeroides CCNUC1 chromosome Gxm1, complete sequence (6481972 bp)
Overview 1 RT 1: 920531-925576 bp 2 RT 2: 4089514-4095553 bp 3 RT 3: 4164922-4170669 bp 4 RT 4: 5361191-5365504 bp Neighborhood of RT #1 [920531, 925576] Uma2 RVT_N RVT-GII GIIM HNH RRXRR HNHc Neighborhood of RT #2 [4089514, 4095594] Lys9 RVT_N RVT-GII GIIM HNH InsQ Neighborhood of RT #3 [4164922, 4170746] PrtC DUF3656 PrtC RVT-UG13 Uma2 Neighborhood of RT #4 [5361191, 5365504] InsQ RVT_N RVT-GII GIIM HNH Feature: gene Location: 920531-921145 bp Ori: QFS43546.1 Feature: domain Description: Uma2 Location: 920603-921140 bp Feature: domain Description: Uma2 Location: 92 0603-92 1140 bp Feature: gene Location: 921711-921839 bp Feature: gene Location: 922211-924127 bp Ori: QFS43548.1 Feature: domain Description: RVT_N Location: 922295-922541 bp Feature: domain Description: RVT_N Location: 92 2 2 95-92 2 541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922583-923279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 2 583-92 32 79 bp Feature: domain Description: GIIM Note: maturase Location: 923384-923594 bp Feature: domain Description: GIIM Note: maturase Location: 92 3384-92 3594 bp Feature: domain Description: HNH Note: nucleases Location: 923846-923978 bp Feature: domain Description: HNH Note: nucleases Location: 92 3846-92 3978 bp Feature: gene Location: 924241-925491 bp Ori: QFS43549.1 Feature: domain Description: RRXRR Location: 924256-924772 bp Feature: domain Description: RRXRR Location: 92 42 56-92 4772 bp Feature: domain Description: HNHc Note: nucleases Location: 924796-924946 bp Feature: domain Description: HNHc Note: nucleases Location: 92 4796-92 4946 bp Feature: gene Location: 925451-925576 bp Feature: gene Location: 4089514-4089927 bp Feature: gene Location: 4090417-4091523 bp Ori: QFS47025.1 Feature: domain Description: Lys9 Location: 4090426-4091518 bp Feature: domain Description: Lys9 Location: 409042 6-4091518 bp Feature: gene Location: 4091826-4093748 bp Ori: QFS47026.1 Feature: domain Description: RVT_N Location: 4091910-4092156 bp Feature: domain Description: RVT_N Location: 4091910-4092 156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4092198-4092897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4092 198-4092 897 bp Feature: domain Description: GIIM Note: maturase Location: 4093002-4093212 bp Feature: domain Description: GIIM Note: maturase Location: 4093002 -40932 12 bp Feature: domain Description: HNH Note: nucleases Location: 4093464-4093599 bp Feature: domain Description: HNH Note: nucleases Location: 4093464-4093599 bp Feature: gene Location: 4094119-4094247 bp Feature: gene Location: 4094443-4095594 bp Ori: QFS47028.1 Feature: domain Description: InsQ Location: 4094446-4095553 bp Feature: domain Description: InsQ Location: 4094446-4095553 bp Feature: gene Location: 4164922-4167570 bp Ori: QFS47097.1 Feature: domain Description: PrtC Location: 4164958-4165789 bp Feature: domain Description: PrtC Location: 4164958-4165789 bp Feature: domain Description: DUF3656 Location: 4166212-4166569 bp Feature: domain Description: DUF3656 Location: 41662 12 -4166569 bp Feature: domain Description: PrtC Location: 4167010-4167487 bp Feature: domain Description: PrtC Location: 4167010-4167487 bp Feature: gene Location: 4167524-4167643 bp Feature: gene Location: 4167700-4169505 bp Ori: QFS47099.1 Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 4168126-4168588 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 416812 6-4168588 bp Feature: gene Location: 4169534-4169689 bp Feature: gene Location: 4170129-4170746 bp Ori: QFS47101.1 Feature: domain Description: Uma2 Location: 4170165-4170669 bp Feature: domain Description: Uma2 Location: 4170165-4170669 bp Feature: gene Location: 5361191-5361502 bp Ori: QFS48366.1 Feature: domain Description: InsQ Location: 5361194-5361461 bp Feature: domain Description: InsQ Location: 5361194-5361461 bp Feature: gene Location: 5361698-5361826 bp Feature: gene Location: 5362197-5364119 bp Ori: QFS48368.1 Feature: domain Description: RVT_N Location: 5362281-5362527 bp Feature: domain Description: RVT_N Location: 5362 2 81-5362 52 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5362569-5363268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5362 569-53632 68 bp Feature: domain Description: GIIM Note: maturase Location: 5363373-5363583 bp Feature: domain Description: GIIM Note: maturase Location: 5363373-5363583 bp Feature: domain Description: HNH Note: nucleases Location: 5363835-5363970 bp Feature: domain Description: HNH Note: nucleases Location: 5363835-5363970 bp Feature: gene Location: 5364403-5365428 bp Feature: gene Location: 5365388-5365504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), RRXRR (pfam14239), HNHc (smart00507), Lys9 (COG1748), InsQ (COG0675), PrtC (COG0826)
DUF3656 (pfam12392), RVT-UG13

Seq: CP045233.1 Nostoc sphaeroides CCNUC1 chromosome pGXM06, complete sequence (36841 bp)
Overview 1 RT 1: 8262-10848 bp Neighborhood of RT #1 [8262, 10859] RVT-GII HicB Feature: gene Location: 8262-8408 bp Feature: gene Location: 8374-9474 bp Feature: gene Location: 9587-9805 bp Ori: QFS52918.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9605-9794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9605-9794 bp Feature: gene Location: 10286-10540 bp Feature: gene Location: 10533-10859 bp Ori: QFS52920.1 Feature: domain Description: HicB Location: 10707-10848 bp Feature: domain Description: HicB Location: 10707-10848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HicB (pfam05534)