myRT

myRT report for GCA_009497735.1_ASM949773v1

Download annotations/find similar RTs

Seq: CP026019.1 Klebsiella pneumoniae strain 13190 plasmid p13190-1, complete sequence (305423 bp)
Overview 1 RT 1: 107342-112086 bp Neighborhood of RT #1 [107342, 112085] AAA_15 TOPRIM_OLD RVT-GII PRK10276 umuC Feature: gene Location: 107342-109135 bp Ori: QFY31249.1 Feature: domain Description: AAA_15 Location: 107345-108530 bp Feature: domain Description: AAA_1 5 Location: 1 07345-1 08530 bp Feature: domain Description: TOPRIM_OLD Location: 108698-108917 bp Feature: domain Description: TOPRIM_OLD Location: 1 08698-1 0891 7 bp Feature: gene Location: 109652-109903 bp Feature: gene Location: 109903-111387 bp Ori: QFY31251.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110305-110995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 0305-1 1 0995 bp Feature: gene Location: 111598-111954 bp Ori: QFY31252.1 Feature: domain Description: PRK10276 Location: 111607-111928 bp Feature: domain Description: PRK1 0276 Location: 1 1 1 607-1 1 1 928 bp Feature: gene Location: 111963-112085 bp Feature: domain Description: umuC Location: 111966-112086 bp Feature: domain Description: umuC Location: 1 1 1 966-1 1 2086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP026017.1 Klebsiella pneumoniae strain 13190 chromosome, complete genome (5261481 bp)
Overview 1 RT 1: 660580-663640 bp 2 RT 2: 1787253-1792124 bp 3 RT 3: 2952670-2960425 bp 4 RT 4: 3126626-3130724 bp Neighborhood of RT #1 [660580, 663640] DinI HTH_XRE RVT-Retrons Neighborhood of RT #2 [1787253, 1792138] dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [2952670, 2960425] PRK15110 PRK09951 RVT-UG11 umuC PRK10276 RVT-GII Neighborhood of RT #4 [3126626, 3130735] umuC PRK10276 RVT-GII DinI Feature: gene Location: 660580-661020 bp Ori: QFY26670.1 Feature: domain Description: DinI Location: 660835-661018 bp Feature: domain Description: DinI Location: 660835-661018 bp Feature: gene Location: 661641-661949 bp Ori: QFY26671.1 Feature: domain Description: HTH_XRE Location: 661653-661818 bp Feature: domain Description: HTH_XRE Location: 661653-661818 bp Feature: gene Location: 661927-662877 bp Ori: QFY26672.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 662107-662650 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 662 107-662 650 bp Feature: gene Location: 663016-663447 bp Feature: gene Location: 663446-663640 bp Feature: gene Location: 1787253-1788422 bp Ori: QFY27684.1 Feature: domain Description: dacD Location: 1787262-1788417 bp Feature: domain Description: dacD Location: 17872 62 -1788417 bp Feature: gene Location: 1788691-1788942 bp Feature: gene Location: 1788942-1790426 bp Ori: QFY27686.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1789344-1790034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1789344-1790034 bp Feature: gene Location: 1790508-1790981 bp Ori: QFY27687.1 Feature: domain Description: PRK10016 Location: 1790511-1790970 bp Feature: domain Description: PRK10016 Location: 1790511-1790970 bp Feature: gene Location: 1791080-1792138 bp Ori: QFY27688.1 Feature: domain Description: YccC Location: 1791086-1792124 bp Feature: domain Description: YccC Location: 1791086-1792 12 4 bp Feature: gene Location: 2952670-2953635 bp Ori: QFY28779.1 Feature: domain Description: PRK15110 Location: 2952673-2953633 bp Feature: domain Description: PRK15110 Location: 2 952 673-2 953633 bp Feature: gene Location: 2953840-2954508 bp Ori: QFY28780.1 Feature: domain Description: PRK09951 Location: 2953843-2954506 bp Feature: domain Description: PRK09951 Location: 2 953843-2 954506 bp Feature: gene Location: 2954709-2955338 bp Ori: QFY30943.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2954712-2955159 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 954712 -2 955159 bp Feature: gene Location: 2955877-2956134 bp Feature: gene Location: 2956290-2957555 bp Ori: QFY28782.1 Feature: domain Description: umuC Location: 2956293-2957553 bp Feature: domain Description: umuC Location: 2 9562 93-2 957553 bp Feature: gene Location: 2957557-2957976 bp Ori: QFY28783.1 Feature: domain Description: PRK10276 Location: 2957560-2957971 bp Feature: domain Description: PRK102 76 Location: 2 957560-2 957971 bp Feature: gene Location: 2958056-2959540 bp Ori: QFY28784.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2958458-2959148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 958458-2 959148 bp Feature: gene Location: 2959540-2959791 bp Feature: gene Location: 2960336-2960425 bp Feature: gene Location: 3126626-3127891 bp Ori: QFY28954.1 Feature: domain Description: umuC Location: 3126629-3127889 bp Feature: domain Description: umuC Location: 312 662 9-312 7889 bp Feature: gene Location: 3127894-3128313 bp Ori: QFY28955.1 Feature: domain Description: PRK10276 Location: 3127897-3128308 bp Feature: domain Description: PRK102 76 Location: 312 7897-312 8308 bp Feature: gene Location: 3128392-3129876 bp Ori: QFY28956.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3128794-3129484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 8794-312 9484 bp Feature: gene Location: 3129876-3130127 bp Feature: gene Location: 3130493-3130735 bp Ori: QFY28958.1 Feature: domain Description: DinI Location: 3130544-3130724 bp Feature: domain Description: DinI Location: 3130544-313072 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), HTH_XRE (smart00530), RVT-Retrons, dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), PRK15110 (peptide ABC transporter permease SapB), PRK09951 (hypothetical protein; Provisional), RVT-UG11
umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP026018.1 Klebsiella pneumoniae strain 13190 plasmid p13190-2, complete sequence (76297 bp)
Overview 1 RT 1: 57917-61659 bp Neighborhood of RT #1 [57917, 61676] ArdC RVT-GII PRK10276 Feature: gene Location: 57917-58882 bp Ori: QFY31113.1 Feature: domain Description: ArdC Location: 58043-58877 bp Feature: domain Description: ArdC Location: 58043 -58877 bp Feature: gene Location: 59090-59359 bp Feature: gene Location: 59352-60836 bp Ori: QFY31115.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59754-60444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59754-60444 bp Feature: gene Location: 60836-61087 bp Feature: gene Location: 61245-61676 bp Ori: QFY31117.1 Feature: domain Description: PRK10276 Location: 61296-61659 bp Feature: domain Description: PRK10276 Location: 61296-61659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)