myRT

myRT report for GCA_009497755.1_ASM949775v1

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Seq: CP026023.1 Klebsiella pneumoniae strain 11420 chromosome, complete genome (5438591 bp)
Overview 1 RT 1: 1312500-1315163 bp 2 RT 2: 1493836-1496008 bp 3 RT 3: 1808662-1813531 bp 4 RT 4: 3249156-3254518 bp 5 RT 5: 4002005-4008306 bp 6 RT 6: 4336577-4344998 bp Neighborhood of RT #1 [1312500, 1315333] RVT-GII PRK10276 Neighborhood of RT #2 [1493836, 1496205] RVT-GII PRK10276 Neighborhood of RT #3 [1808662, 1813545] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [3249156, 3254574] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #5 [4002005, 4008306] Sigma54_activat LevR DUF2157 RVT-GII Neighborhood of RT #6 [4336577, 4346161] RVT-Retrons FRG BRR2 BRR2 Feature: gene Location: 1312500-1312688 bp Feature: gene Location: 1312681-1313019 bp Feature: gene Location: 1313116-1314600 bp Ori: QFY32742.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1313518-1314208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 351 8-1 31 4208 bp Feature: gene Location: 1314600-1314851 bp Feature: gene Location: 1315004-1315333 bp Ori: QFY32744.1 Feature: domain Description: PRK10276 Location: 1315010-1315163 bp Feature: domain Description: PRK1 0276 Location: 1 31 501 0-1 31 51 63 bp Feature: gene Location: 1493836-1494087 bp Feature: gene Location: 1494087-1495571 bp Ori: QFY32927.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1494489-1495179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 494489-1 4951 79 bp Feature: gene Location: 1495649-1495888 bp Feature: gene Location: 1495888-1496205 bp Ori: QFY32929.1 Feature: domain Description: PRK10276 Location: 1495894-1496008 bp Feature: domain Description: PRK1 0276 Location: 1 495894-1 496008 bp Feature: gene Location: 1808662-1809831 bp Ori: QFY33180.1 Feature: domain Description: dacD Location: 1808671-1809826 bp Feature: domain Description: dacD Location: 1 808671 -1 809826 bp Feature: gene Location: 1810100-1810351 bp Feature: gene Location: 1810470-1811833 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1810752-1810878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 0752-1 81 0878 bp Feature: gene Location: 1811915-1812388 bp Ori: QFY33182.1 Feature: domain Description: PRK10016 Location: 1811918-1812377 bp Feature: domain Description: PRK1 001 6 Location: 1 81 1 91 8-1 81 2377 bp Feature: gene Location: 1812487-1813545 bp Ori: QFY33183.1 Feature: domain Description: YccC Location: 1812493-1813531 bp Feature: domain Description: YccC Location: 1 81 2493-1 81 3531 bp Feature: gene Location: 3249156-3250421 bp Ori: QFY34469.1 Feature: domain Description: umuC Location: 3249159-3250419 bp Feature: domain Description: umuC Location: 32491 59-325041 9 bp Feature: gene Location: 3250424-3250843 bp Ori: QFY34470.1 Feature: domain Description: PRK10276 Location: 3250427-3250838 bp Feature: domain Description: PRK1 0276 Location: 3250427-3250838 bp Feature: gene Location: 3250922-3252406 bp Ori: QFY34471.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3251324-3252014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3251 324-325201 4 bp Feature: gene Location: 3253022-3253264 bp Ori: QFY34472.1 Feature: domain Description: DinI Location: 3253073-3253253 bp Feature: domain Description: DinI Location: 3253073-3253253 bp Feature: gene Location: 3253435-3254574 bp Ori: QFY34473.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3253618-3254518 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 325361 8-325451 8 bp Feature: gene Location: 4002005-4004734 bp Ori: QFY35144.1 Feature: domain Description: Sigma54_activat Location: 4002311-4002809 bp Feature: domain Description: Sigma54_activat Location: 400231 1 -4002809 bp Feature: domain Description: LevR Location: 4003331-4004732 bp Feature: domain Description: LevR Location: 4003331 -4004732 bp Feature: gene Location: 4004831-4005865 bp Ori: QFY35145.1 Feature: domain Description: DUF2157 Location: 4004882-4005335 bp Feature: domain Description: DUF21 57 Location: 4004882-4005335 bp Feature: gene Location: 4006015-4007499 bp Ori: QFY35146.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4006417-4007107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400641 7-40071 07 bp Feature: gene Location: 4007499-4007750 bp Feature: gene Location: 4007969-4008306 bp Feature: gene Location: 4336577-4337371 bp Feature: gene Location: 4337531-4337926 bp Feature: gene Location: 4338610-4340445 bp Ori: QFY35445.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4338745-4339444 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4338745-4339444 bp Feature: gene Location: 4341262-4342632 bp Ori: QFY35446.1 Feature: domain Description: FRG Location: 4341850-4342135 bp Feature: domain Description: FRG Location: 4341 850-43421 35 bp Feature: gene Location: 4343033-4346161 bp Ori: QFY35447.1 Feature: domain Description: BRR2 Location: 4343699-4344287 bp Feature: domain Description: BRR2 Location: 4343699-4344287 bp Feature: domain Description: BRR2 Location: 4344719-4344998 bp Feature: domain Description: BRR2 Location: 434471 9-4344998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), umuC (PRK03609), DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), Sigma54_activat (pfam00158), LevR (COG3933)
DUF2157 (pfam09925), RVT-Retrons, FRG (smart00901), BRR2 (COG1204)