myRT

myRT report for GCA_009601685.1_ASM960168v1

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Seq: CP045701.1 Pseudomonas brassicacearum strain S-1 chromosome, complete genome (6575053 bp)
Overview 1 RT 1: 986521-992876 bp 2 RT 2: 1138461-1144249 bp 3 RT 3: 1214183-1219270 bp 4 RT 4: 5421690-5427714 bp 5 RT 5: 5898470-5904059 bp 6 RT 6: 5972905-5981637 bp Neighborhood of RT #1 [986521, 992899] SlyX SlyX RVT-GII GIIM PRK05742 DUF1631 Neighborhood of RT #2 [1138461, 1144434] RVT-UG2 SMC_prok_B Neighborhood of RT #3 [1214183, 1219290] trmD rplS RVT-GII GIIM xerD PRK10877 Neighborhood of RT #4 [5421690, 5427752] COG2945 YhcB RVT-GII GIIM PRK07482 ALDH_F5_SSADH_GabD Neighborhood of RT #5 [5898470, 5904115] Bfr KatE RVT-GII GIIM RplQ PRK05182 Neighborhood of RT #6 [5972905, 5981669] NTP_transferase_like_1 COG3178 RVT_N RVT-GII GIIM HNH LptD PRK10770 Feature: gene Location: 986521-987069 bp Ori: QGA48337.1 Feature: domain Description: SlyX Location: 986857-986968 bp Feature: domain Description: SlyX Location: 986857-986968 bp Feature: domain Description: SlyX Location: 986980-987067 bp Feature: domain Description: SlyX Location: 986980-987067 bp Feature: gene Location: 987375-987680 bp Feature: gene Location: 988240-989538 bp Ori: QGA48339.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988501-989089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988501 -989089 bp Feature: domain Description: GIIM Note: maturase Location: 989146-989359 bp Feature: domain Description: GIIM Note: maturase Location: 9891 46-989359 bp Feature: gene Location: 989610-990458 bp Ori: QGA48340.1 Feature: domain Description: PRK05742 Location: 989625-990453 bp Feature: domain Description: PRK05742 Location: 989625-990453 bp Feature: gene Location: 990686-992899 bp Ori: QGA48341.1 Feature: domain Description: DUF1631 Location: 990752-992876 bp Feature: domain Description: DUF1 631 Location: 990752-992876 bp Feature: gene Location: 1138461-1139414 bp Feature: gene Location: 1139606-1141006 bp Feature: gene Location: 1141231-1142517 bp Ori: QGA52957.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1141417-1142206 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 1 41 41 7-1 1 42206 bp Feature: gene Location: 1143337-1143525 bp Feature: gene Location: 1143592-1144434 bp Ori: QGA48460.1 Feature: domain Description: SMC_prok_B Location: 1143601-1144249 bp Feature: domain Description: SMC_prok_B Location: 1 1 43601 -1 1 44249 bp Feature: gene Location: 1214183-1214935 bp Ori: QGA48522.1 Gene: trmD Feature: domain Description: trmD Location: 1214198-1214912 bp Feature: domain Description: trmD Location: 1 21 41 98-1 21 491 2 bp Feature: gene Location: 1214981-1215331 bp Ori: QGA48523.1 Gene: rplS Feature: domain Description: rplS Location: 1214993-1215326 bp Feature: domain Description: rplS Location: 1 21 4993-1 21 5326 bp Feature: gene Location: 1215905-1217230 bp Ori: QGA48524.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1216166-1216781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 61 66-1 21 6781 bp Feature: domain Description: GIIM Note: maturase Location: 1216838-1217051 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 6838-1 21 7051 bp Feature: gene Location: 1217385-1218281 bp Ori: QGA48525.1 Gene: xerD Feature: domain Description: xerD Location: 1217400-1218279 bp Feature: domain Description: xerD Location: 1 21 7400-1 21 8279 bp Feature: gene Location: 1218559-1219290 bp Ori: QGA48526.1 Gene: dsbC Feature: domain Description: PRK10877 Location: 1218580-1219270 bp Feature: domain Description: PRK1 0877 Location: 1 21 8580-1 21 9270 bp Feature: gene Location: 5421690-5422319 bp Ori: QGA53081.1 Feature: domain Description: COG2945 Location: 5421696-5422311 bp Feature: domain Description: COG2945 Location: 5421 696-542231 1 bp Feature: gene Location: 5422467-5422904 bp Ori: QGA51934.1 Feature: domain Description: YhcB Location: 5422473-5422887 bp Feature: domain Description: YhcB Location: 5422473-5422887 bp Feature: gene Location: 5422987-5424285 bp Ori: QGA51935.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5423248-5423836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5423248-5423836 bp Feature: domain Description: GIIM Note: maturase Location: 5423893-5424106 bp Feature: domain Description: GIIM Note: maturase Location: 5423893-54241 06 bp Feature: gene Location: 5424883-5426268 bp Ori: QGA51936.1 Feature: domain Description: PRK07482 Location: 5424886-5426260 bp Feature: domain Description: PRK07482 Location: 5424886-5426260 bp Feature: gene Location: 5426265-5427752 bp Ori: QGA51937.1 Feature: domain Description: ALDH_F5_SSADH_GabD Location: 5426355-5427714 bp Feature: domain Description: ALDH_F5_SSADH_GabD Location: 5426355-542771 4 bp Feature: gene Location: 5898470-5898934 bp Ori: QGA52352.1 Gene: bfr Feature: domain Description: Bfr Location: 5898473-5898929 bp Feature: domain Description: Bfr Location: 5898473-5898929 bp Feature: gene Location: 5899093-5900541 bp Ori: QGA52353.1 Feature: domain Description: KatE Location: 5899102-5900536 bp Feature: domain Description: KatE Location: 58991 02-5900536 bp Feature: gene Location: 5900791-5902116 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5901052-5901667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5901 052-5901 667 bp Feature: domain Description: GIIM Note: maturase Location: 5901724-5901937 bp Feature: domain Description: GIIM Note: maturase Location: 5901 724-5901 937 bp Feature: gene Location: 5902685-5903071 bp Ori: QGA52354.1 Gene: rplQ Feature: domain Description: RplQ Location: 5902688-5903033 bp Feature: domain Description: RplQ Location: 5902688-5903033 bp Feature: gene Location: 5903114-5904115 bp Ori: QGA52355.1 Gene: rpoA Feature: domain Description: PRK05182 Location: 5903135-5904059 bp Feature: domain Description: PRK051 82 Location: 59031 35-5904059 bp Feature: gene Location: 5972905-5973576 bp Ori: QGA52426.1 Feature: domain Description: NTP_transferase_like_1 Location: 5972911-5973547 bp Feature: domain Description: NTP_transferase_like_1 Location: 597291 1 -5973547 bp Feature: gene Location: 5973573-5974598 bp Ori: QGA52427.1 Feature: domain Description: COG3178 Location: 5973594-5974584 bp Feature: domain Description: COG31 78 Location: 5973594-5974584 bp Feature: gene Location: 5975721-5977418 bp Ori: QGA52428.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5975778-5976018 bp Feature: domain Description: RVT_N Location: 5975778-597601 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5976066-5976702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5976066-5976702 bp Feature: domain Description: GIIM Note: maturase Location: 5976753-5976987 bp Feature: domain Description: GIIM Note: maturase Location: 5976753-5976987 bp Feature: domain Description: HNH Note: nucleases Location: 5977239-5977377 bp Feature: domain Description: HNH Note: nucleases Location: 5977239-5977377 bp Feature: gene Location: 5977574-5980372 bp Ori: QGA52429.1 Gene: lptD Feature: domain Description: LptD Location: 5978009-5980355 bp Feature: domain Description: LptD Location: 5978009-5980355 bp Feature: gene Location: 5980353-5981669 bp Ori: QGA52430.1 Gene: surA Feature: domain Description: PRK10770 Location: 5980428-5981637 bp Feature: domain Description: PRK1 0770 Location: 5980428-5981 637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SlyX (pfam04102), RVT-GII, GIIM (pfam08388), PRK05742 (carboxylating nicotinate-nucleotide diphosphorylase), DUF1631 (pfam07793), RVT-UG2, SMC_prok_B (TIGR02168), trmD (TIGR00088), rplS (PRK05338), xerD (PRK02436)
PRK10877 (protein disulfide isomerase II DsbC; Provisional), COG2945 (Alpha/beta superfamily hydrolase ), YhcB (COG3105), PRK07482 (hypothetical protein; Provisional), ALDH_F5_SSADH_GabD (cd07103), Bfr (COG2193), KatE (COG0753), RplQ (COG0203), PRK05182 (DNA-directed RNA polymerase subunit alpha; Provisional), NTP_transferase_like_1 (cd06422)
COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)