myRT

myRT report for GCA_009648955.1_ASM964895v1

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Seq: CP045776.1 Bacillus paranthracis strain CFSAN068816 plasmid p1CFSAN068816, complete sequence (273192 bp)
Overview 1 RT 1: 54-5207 bp 2 RT 2: 65161-70393 bp 3 RT 3: 73989-83020 bp 4 RT 4: 136367-146073 bp Neighborhood of RT #1 [54, 5215] RVT-GII HNHc ABC2_membrane_2 Neighborhood of RT #2 [65161, 70393] beta_clamp RVT-GII COG4712 Neighborhood of RT #3 [73989, 83020] rpsA nuc_hydro RVT_N RVT-GII GIIM TraG-D_C Ftsk_gamma Ftsk_gamma Neighborhood of RT #4 [136367, 146073] TraC-F-type RVT-GII HNHc TraC-F-type Feature: gene Location: 54-1982 bp Ori: QGG16211.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375-1110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375-1 1 1 0 bp Feature: domain Description: HNHc Note: nucleases Location: 1701-1866 bp Feature: domain Description: HNHc Note: nucleases Location: 1 701 -1 866 bp Feature: gene Location: 3024-3437 bp Feature: gene Location: 4409-5215 bp Ori: QGG16213.1 Feature: domain Description: ABC2_membrane_2 Location: 4427-5207 bp Feature: domain Description: ABC2_membrane_2 Location: 4427-5207 bp Feature: gene Location: 65161-66273 bp Ori: QGG16252.1 Gene: dnaN Feature: domain Description: beta_clamp Location: 65164-66268 bp Feature: domain Description: beta_clamp Location: 651 64-66268 bp Feature: gene Location: 66354-66881 bp Feature: gene Location: 66959-68857 bp Ori: QGG16254.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67274-67976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67274-67976 bp Feature: gene Location: 69619-69975 bp Ori: QGG16255.1 Feature: domain Description: COG4712 Location: 69628-69970 bp Feature: domain Description: COG471 2 Location: 69628-69970 bp Feature: gene Location: 69998-70393 bp Feature: gene Location: 73989-74972 bp Ori: QGG16262.1 Feature: domain Description: rpsA Location: 74256-74793 bp Feature: domain Description: rpsA Location: 74256-74793 bp Feature: gene Location: 75587-76537 bp Ori: QGG16263.1 Feature: domain Description: nuc_hydro Location: 75602-76508 bp Feature: domain Description: nuc_hydro Location: 75602-76508 bp Feature: gene Location: 77257-78903 bp Ori: QGG16264.1 Gene: ltrA Feature: domain Description: RVT_N Location: 77299-77536 bp Feature: domain Description: RVT_N Location: 77299-77536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77590-78250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77590-78250 bp Feature: domain Description: GIIM Note: maturase Location: 78319-78550 bp Feature: domain Description: GIIM Note: maturase Location: 7831 9-78550 bp Feature: gene Location: 79116-82616 bp Ori: QGG16265.1 Feature: domain Description: TraG-D_C Location: 80733-81093 bp Feature: domain Description: TraG-D_C Location: 80733-81 093 bp Feature: domain Description: Ftsk_gamma Location: 81501-81678 bp Feature: domain Description: Ftsk_gamma Location: 81 501 -81 678 bp Feature: domain Description: Ftsk_gamma Location: 81810-81945 bp Feature: domain Description: Ftsk_gamma Location: 81 81 0-81 945 bp Feature: gene Location: 82634-83020 bp Feature: gene Location: 136367-137281 bp Feature: gene Location: 137284-138255 bp Ori: QGG16311.1 Feature: domain Description: TraC-F-type Location: 137704-138178 bp Feature: domain Description: TraC-F-type Location: 1 37704-1 381 78 bp Feature: gene Location: 138971-140803 bp Ori: QGG16312.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139271-139976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 39271 -1 39976 bp Feature: domain Description: HNHc Note: nucleases Location: 140555-140687 bp Feature: domain Description: HNHc Note: nucleases Location: 1 40555-1 40687 bp Feature: gene Location: 141094-142062 bp Ori: QGG16313.1 Feature: domain Description: TraC-F-type Location: 141121-141901 bp Feature: domain Description: TraC-F-type Location: 1 41 1 21 -1 41 901 bp Feature: gene Location: 142093-146073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), ABC2_membrane_2 (pfam12679), beta_clamp (cl29549), COG4712 (Uncharacterized protein ), rpsA (TIGR00717), nuc_hydro (cl00226), RVT_N (pfam13655), GIIM (pfam08388), TraG-D_C (pfam12696)
Ftsk_gamma (smart00843), TraC-F-type (TIGR02746)

Seq: CP045777.1 Bacillus paranthracis strain CFSAN068816 chromosome, complete genome (5351395 bp)
Overview 1 RT 1: 1759913-1766115 bp 2 RT 2: 1853458-1858582 bp 3 RT 3: 2190569-2202930 bp 4 RT 4: 2447506-2454249 bp 5 RT 5: 2519745-2526020 bp 6 RT 6: 3903235-3909322 bp 7 RT 7: 4678797-4686800 bp 8 RT 8: 4719791-4724789 bp Neighborhood of RT #1 [1759913, 1766135] PRK08068 nitrilase_5 RVT-GII HNHc nitrilase_5 mtnK Neighborhood of RT #2 [1853458, 1858680] caa3_CtaG amiF RVT-GII HNHc amiF YugN Neighborhood of RT #3 [2190569, 2202930] CcdC B_ant_repeat B_ant_repeat B_ant_repeat RVT-GII HNHc B_ant_repeat Neighborhood of RT #4 [2447506, 2454251] IscR IDEAL RVT_N RVT-GII GIIM stp PRK02487 Neighborhood of RT #5 [2519745, 2526214] YbaK_EbsC GrpB RVT_N RVT-GII GIIM HTH_3 TPR Hydrolase_4 Neighborhood of RT #6 [3903235, 3909438] PRK06811 AsnB RVT-GII HNHc asn_synth_AEB PP2C_2 Neighborhood of RT #7 [4678797, 4686811] Collagen_bind SpaA CollagenBindB COG4932 RVT-GII HNHc Big_8 PRK06187 Neighborhood of RT #8 [4719791, 4724791] HxlR TTHA1623-like_MBL-fold RVT-GII HNHc metallo-hydrolase-like_MBL-fold PRK12856 Feature: gene Location: 1759913-1761091 bp Ori: QGG18100.1 Feature: domain Description: PRK08068 Location: 1759922-1761083 bp Feature: domain Description: PRK08068 Location: 175992 2 -1761083 bp Feature: gene Location: 1761082-1761861 bp Ori: QGG18101.1 Feature: domain Description: nitrilase_5 Location: 1761196-1761847 bp Feature: domain Description: nitrilase_5 Location: 1761196-1761847 bp Feature: gene Location: 1762577-1764409 bp Ori: QGG18102.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1762877-1763582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1762 877-1763582 bp Feature: domain Description: HNHc Note: nucleases Location: 1764161-1764293 bp Feature: domain Description: HNHc Note: nucleases Location: 1764161-17642 93 bp Feature: gene Location: 1764526-1764648 bp Feature: domain Description: nitrilase_5 Location: 1764529-1764631 bp Feature: domain Description: nitrilase_5 Location: 176452 9-1764631 bp Feature: gene Location: 1764954-1766135 bp Ori: QGG18103.1 Feature: domain Description: mtnK Location: 1764957-1766115 bp Feature: domain Description: mtnK Location: 1764957-1766115 bp Feature: gene Location: 1853458-1854363 bp Ori: QGG18195.1 Gene: ctaG Feature: domain Description: caa3_CtaG Location: 1853467-1854307 bp Feature: domain Description: caa3_CtaG Location: 1853467-1854307 bp Feature: gene Location: 1854591-1854962 bp Gene: amiF Feature: domain Description: amiF Location: 1854594-1854963 bp Feature: domain Description: amiF Location: 1854594-1854963 bp Feature: gene Location: 1855696-1857528 bp Ori: QGG18196.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1855996-1856701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1855996-1856701 bp Feature: domain Description: HNHc Note: nucleases Location: 1857280-1857412 bp Feature: domain Description: HNHc Note: nucleases Location: 18572 80-1857412 bp Feature: gene Location: 1857645-1858268 bp Feature: domain Description: amiF Location: 1857648-1858263 bp Feature: domain Description: amiF Location: 1857648-18582 63 bp Feature: gene Location: 1858315-1858680 bp Ori: QGG18197.1 Feature: domain Description: YugN Location: 1858333-1858582 bp Feature: domain Description: YugN Location: 1858333-1858582 bp Feature: gene Location: 2190569-2191075 bp Ori: QGG18522.1 Feature: domain Description: CcdC Location: 2190578-2191040 bp Feature: domain Description: CcdC Location: 2 190578-2 191040 bp Feature: gene Location: 2191139-2192428 bp Ori: QGG18523.1 Feature: domain Description: B_ant_repeat Location: 2191226-2191337 bp Feature: domain Description: B_ant_repeat Location: 2 1912 2 6-2 191337 bp Feature: domain Description: B_ant_repeat Location: 2191577-2191733 bp Feature: domain Description: B_ant_repeat Location: 2 191577-2 191733 bp Feature: domain Description: B_ant_repeat Location: 2191976-2192132 bp Feature: domain Description: B_ant_repeat Location: 2 191976-2 192 132 bp Feature: gene Location: 2193121-2195049 bp Ori: QGG18524.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2193442-2194177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 193442 -2 194177 bp Feature: domain Description: HNHc Note: nucleases Location: 2194768-2194933 bp Feature: domain Description: HNHc Note: nucleases Location: 2 194768-2 194933 bp Feature: gene Location: 2195218-2201582 bp Feature: domain Description: B_ant_repeat Location: 2195227-2195365 bp Feature: domain Description: B_ant_repeat Location: 2 1952 2 7-2 195365 bp Feature: gene Location: 2201851-2202930 bp Feature: gene Location: 2447506-2447919 bp Ori: QGG18764.1 Feature: domain Description: IscR Location: 2447509-2447902 bp Feature: domain Description: IscR Location: 2 447509-2 447902 bp Feature: gene Location: 2448036-2448371 bp Ori: QGG18765.1 Feature: domain Description: IDEAL Location: 2448240-2448336 bp Feature: domain Description: IDEAL Location: 2 4482 40-2 448336 bp Feature: gene Location: 2449162-2450808 bp Ori: QGG18766.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2449204-2449441 bp Feature: domain Description: RVT_N Location: 2 4492 04-2 449441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2449495-2450155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 449495-2 450155 bp Feature: domain Description: GIIM Note: maturase Location: 2450224-2450455 bp Feature: domain Description: GIIM Note: maturase Location: 2 4502 2 4-2 450455 bp Feature: gene Location: 2451882-2453201 bp Ori: QGG18767.1 Feature: domain Description: stp Location: 2451969-2453169 bp Feature: domain Description: stp Location: 2 451969-2 453169 bp Feature: gene Location: 2453760-2454251 bp Ori: QGG18768.1 Feature: domain Description: PRK02487 Location: 2453790-2454249 bp Feature: domain Description: PRK02 487 Location: 2 453790-2 4542 49 bp Feature: gene Location: 2519745-2520221 bp Ori: QGG18836.1 Gene: ybaK Feature: domain Description: YbaK_EbsC Location: 2519763-2520213 bp Feature: domain Description: YbaK_EbsC Location: 2 519763-2 52 02 13 bp Feature: gene Location: 2520808-2521338 bp Ori: QGG18837.1 Feature: domain Description: GrpB Location: 2520820-2521294 bp Feature: domain Description: GrpB Location: 2 52 082 0-2 52 12 94 bp Feature: gene Location: 2522055-2523701 bp Ori: QGG18838.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2522097-2522334 bp Feature: domain Description: RVT_N Location: 2 52 2 097-2 52 2 334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2522388-2523048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 52 2 388-2 52 3048 bp Feature: domain Description: GIIM Note: maturase Location: 2523117-2523348 bp Feature: domain Description: GIIM Note: maturase Location: 2 52 3117-2 52 3348 bp Feature: gene Location: 2524061-2525185 bp Ori: QGG18839.1 Feature: domain Description: HTH_3 Location: 2524091-2524253 bp Feature: domain Description: HTH_3 Location: 2 52 4091-2 52 42 53 bp Feature: domain Description: TPR Location: 2524817-2524940 bp Feature: domain Description: TPR Location: 2 52 4817-2 52 4940 bp Feature: gene Location: 2525195-2526214 bp Ori: QGG18840.1 Feature: domain Description: Hydrolase_4 Location: 2525360-2526020 bp Feature: domain Description: Hydrolase_4 Location: 2 52 5360-2 52 602 0 bp Feature: gene Location: 3903235-3903801 bp Ori: QGG20161.1 Feature: domain Description: PRK06811 Location: 3903238-3903796 bp Feature: domain Description: PRK06811 Location: 39032 38-3903796 bp Feature: gene Location: 3904060-3904257 bp Ori: QGG20162.1 Feature: domain Description: AsnB Location: 3904069-3904246 bp Feature: domain Description: AsnB Location: 3904069-39042 46 bp Feature: gene Location: 3904973-3906805 bp Ori: QGG20163.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3905273-3905978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39052 73-3905978 bp Feature: domain Description: HNHc Note: nucleases Location: 3906557-3906689 bp Feature: domain Description: HNHc Note: nucleases Location: 3906557-3906689 bp Feature: gene Location: 3906886-3908568 bp Ori: QGG20164.1 Gene: asnB Feature: domain Description: asn_synth_AEB Location: 3906916-3908344 bp Feature: domain Description: asn_synth_AEB Location: 3906916-3908344 bp Feature: gene Location: 3908611-3909438 bp Ori: QGG20165.1 Feature: domain Description: PP2C_2 Location: 3908983-3909322 bp Feature: domain Description: PP2 C_2 Location: 3908983-390932 2 bp Feature: gene Location: 4678797-4679261 bp Feature: gene Location: 4679350-4681464 bp Feature: domain Description: Collagen_bind Location: 4679371-4679728 bp Feature: domain Description: Collagen_bind Location: 4679371-467972 8 bp Feature: domain Description: SpaA Location: 4679866-4680067 bp Feature: domain Description: SpaA Location: 4679866-4680067 bp Feature: domain Description: CollagenBindB Location: 4680115-4680361 bp Feature: domain Description: CollagenBindB Location: 4680115-4680361 bp Feature: domain Description: COG4932 Location: 4680973-4681462 bp Feature: domain Description: COG4932 Location: 4680973-4681462 bp Feature: gene Location: 4681581-4683413 bp Ori: QGG20923.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4681881-4682586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4681881-4682 586 bp Feature: domain Description: HNHc Note: nucleases Location: 4683165-4683297 bp Feature: domain Description: HNHc Note: nucleases Location: 4683165-46832 97 bp Feature: gene Location: 4684147-4684641 bp Feature: domain Description: Big_8 Location: 4684297-4684546 bp Feature: domain Description: Big_8 Location: 46842 97-4684546 bp Feature: gene Location: 4685255-4686811 bp Ori: QGG20924.1 Feature: domain Description: PRK06187 Location: 4685258-4686800 bp Feature: domain Description: PRK06187 Location: 46852 58-4686800 bp Feature: gene Location: 4719791-4720135 bp Ori: QGG20954.1 Feature: domain Description: HxlR Location: 4719842-4720124 bp Feature: domain Description: HxlR Location: 4719842 -472 012 4 bp Feature: gene Location: 4720775-4721311 bp Feature: domain Description: TTHA1623-like_MBL-fold Location: 4720784-4721297 bp Feature: domain Description: TTHA162 3-like_MBL-fold Location: 472 0784-472 12 97 bp Feature: gene Location: 4721428-4723260 bp Ori: QGG20955.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4721728-4722433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472 172 8-472 2 433 bp Feature: domain Description: HNHc Note: nucleases Location: 4723012-4723144 bp Feature: domain Description: HNHc Note: nucleases Location: 472 3012 -472 3144 bp Feature: gene Location: 4723982-4724089 bp Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 4723997-4724084 bp Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 472 3997-472 4084 bp Feature: gene Location: 4724480-4724791 bp Ori: QGG20956.1 Feature: domain Description: PRK12856 Location: 4724483-4724789 bp Feature: domain Description: PRK12 856 Location: 472 4483-472 4789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08068 (transaminase; Reviewed), nitrilase_5 (cd07583), RVT-GII, HNHc (smart00507), mtnK (PRK09550), caa3_CtaG (TIGR02737), amiF (PRK13287), YugN (pfam08868), CcdC (COG4846), B_ant_repeat (TIGR01451)
IscR (TIGR02010), IDEAL (smart00914), RVT_N (pfam13655), GIIM (pfam08388), stp (TIGR00814), PRK02487 (heme-degrading domain-containing protein), YbaK_EbsC (TIGR00011), GrpB (pfam04229), HTH_3 (pfam01381), TPR (smart00028)
Hydrolase_4 (pfam12146), PRK06811 (RNA polymerase factor sigma-70; Validated), AsnB (COG0367), asn_synth_AEB (TIGR01536), PP2C_2 (pfam13672), Collagen_bind (pfam05737), SpaA (pfam17802), CollagenBindB (cl15753), COG4932 (Uncharacterized surface anchored protein ), Big_8 (pfam17961)
PRK06187 (long-chain-fatty-acid--CoA ligase; Validated), HxlR (pfam01638), TTHA1623-like_MBL-fold (cd16322), metallo-hydrolase-like_MBL-fold (cl23716), PRK12856 (hypothetical protein; Provisional)