myRT

myRT report for GCA_009650175.1_ASM965017v1

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Seq: CP045864.1 Escherichia coli O157:H7 strain CFSAN076619 plasmid p1CFSAN076619, complete sequence (95989 bp)
Overview 1 RT 1: 26932-33379 bp Neighborhood of RT #1 [26932, 33381] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc PRK13698 PRK13705 Feature: gene Location: 26932-27237 bp Feature: gene Location: 27241-28143 bp Ori: QGG88887.1 Feature: domain Description: DUF1281 Location: 27310-27838 bp Feature: domain Description: DUF1 281 Location: 2731 0-27838 bp Feature: domain Description: DUF1281_C Location: 27844-28072 bp Feature: domain Description: DUF1 281 _C Location: 27844-28072 bp Feature: gene Location: 28220-29944 bp Ori: QGG88888.1 Gene: ltrA Feature: domain Description: RVT_N Location: 28277-28514 bp Feature: domain Description: RVT_N Location: 28277-2851 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28565-29213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28565-2921 3 bp Feature: domain Description: YkfC Location: 29345-29501 bp Feature: domain Description: YkfC Location: 29345-29501 bp Feature: domain Description: HNHc Note: nucleases Location: 29729-29888 bp Feature: domain Description: HNHc Note: nucleases Location: 29729-29888 bp Feature: gene Location: 31244-32215 bp Ori: QGG88889.1 Feature: domain Description: PRK13698 Location: 31247-32210 bp Feature: domain Description: PRK1 3698 Location: 31 247-3221 0 bp Feature: gene Location: 32215-33381 bp Ori: QGG88890.1 Gene: sopA Feature: domain Description: PRK13705 Location: 32218-33379 bp Feature: domain Description: PRK1 3705 Location: 3221 8-33379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK13698 (ParB/RepB/Spo0J family plasmid partition protein), PRK13705 (plasmid-partitioning protein SopA; Provisional)

Seq: CP045863.1 Escherichia coli O157:H7 strain CFSAN076619 chromosome, complete genome (5338790 bp)
Overview 1 RT 1: 2498651-2502929 bp Neighborhood of RT #1 [2498651, 2503831] RVT-Retrons HTH_XRE Phage_GPA Feature: gene Location: 2498651-2498920 bp Feature: gene Location: 2499144-2499581 bp Feature: gene Location: 2499706-2500656 bp Ori: QGG86166.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2499886-2500429 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 499886-2 50042 9 bp Feature: gene Location: 2500634-2500942 bp Ori: QGG86167.1 Feature: domain Description: HTH_XRE Location: 2500646-2500811 bp Feature: domain Description: HTH_XRE Location: 2 500646-2 500811 bp Feature: gene Location: 2501543-2503831 bp Ori: QGG86168.1 Feature: domain Description: Phage_GPA Location: 2501942-2502929 bp Feature: domain Description: Phage_GPA Location: 2 501942 -2 502 92 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), Phage_GPA (pfam05840)