myRT

myRT report for GCA_009662315.1_ASM966231v1

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Seq: CP045739.1 Pseudomonas aeruginosa strain AG1 chromosome, complete genome (7190208 bp)
Overview 1 RT 1: 710053-720358 bp 2 RT 2: 736616-744780 bp 3 RT 3: 1253077-1259887 bp 4 RT 4: 2798382-2805693 bp 5 RT 5: 5366452-5372136 bp Neighborhood of RT #1 [710053, 720360] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [736616, 744794] PRK10770 LptD RVT-GII YkfC HNH COG3178 Neighborhood of RT #3 [1253077, 1260084] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Neighborhood of RT #4 [2798382, 2806748] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Neighborhood of RT #5 [5366452, 5372141] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 710053-711174 bp Ori: QGH88885.1 Feature: domain Description: COG3177 Location: 710071-711163 bp Feature: domain Description: COG31 77 Location: 71 0071 -71 1 1 63 bp Feature: gene Location: 711433-711594 bp Feature: gene Location: 711897-713582 bp Ori: QGH88887.1 Feature: domain Description: RVT_N Location: 711954-712194 bp Feature: domain Description: RVT_N Location: 71 1 954-71 21 94 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 712242-712878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 2242-71 2878 bp Feature: domain Description: GIIM Note: maturase Location: 712932-713163 bp Feature: domain Description: GIIM Note: maturase Location: 71 2932-71 31 63 bp Feature: domain Description: HNH Note: nucleases Location: 713415-713553 bp Feature: domain Description: HNH Note: nucleases Location: 71 341 5-71 3553 bp Feature: gene Location: 714663-718400 bp Ori: QGH88888.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 714771-715428 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 71 4771 -71 5428 bp Feature: domain Description: PRK09776 Location: 715641-716112 bp Feature: domain Description: PRK09776 Location: 71 5641 -71 61 1 2 bp Feature: domain Description: PAS Location: 716169-716694 bp Feature: domain Description: PAS Location: 71 61 69-71 6694 bp Feature: domain Description: PRK10060 Location: 716706-718350 bp Feature: domain Description: PRK1 0060 Location: 71 6706-71 8350 bp Feature: gene Location: 718507-720360 bp Ori: QGH88889.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 718519-720358 bp Feature: domain Description: PRK05658 Location: 71 851 9-720358 bp Feature: gene Location: 736616-737908 bp Ori: QGH88907.1 Gene: surA Feature: domain Description: PRK10770 Location: 736706-737900 bp Feature: domain Description: PRK1 0770 Location: 736706-737900 bp Feature: gene Location: 737889-740660 bp Ori: QGH88908.1 Gene: ostA Feature: domain Description: LptD Location: 738084-740646 bp Feature: domain Description: LptD Location: 738084-740646 bp Feature: gene Location: 740793-742103 bp Ori: QGH88909.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740796-741372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740796-741 372 bp Feature: domain Description: YkfC Location: 741582-741735 bp Feature: domain Description: YkfC Location: 741 582-741 735 bp Feature: domain Description: HNH Note: nucleases Location: 741909-742047 bp Feature: domain Description: HNH Note: nucleases Location: 741 909-742047 bp Feature: gene Location: 743347-743481 bp Feature: gene Location: 743778-744794 bp Ori: QGH88911.1 Gene: amgK Feature: domain Description: COG3178 Location: 743781-744780 bp Feature: domain Description: COG31 78 Location: 743781 -744780 bp Feature: gene Location: 1253077-1253904 bp Ori: QGH89408.1 Gene: phnC_1 Feature: domain Description: ABC_phnC Location: 1253107-1253821 bp Feature: domain Description: ABC_phnC Location: 1 2531 07-1 253821 bp Feature: gene Location: 1254247-1254888 bp Ori: QGH89409.1 Feature: domain Description: DUF772 Location: 1254397-1254592 bp Feature: domain Description: DUF772 Location: 1 254397-1 254592 bp Feature: gene Location: 1255277-1256545 bp Ori: QGH89410.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1255490-1256147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 255490-1 2561 47 bp Feature: domain Description: GIIM Note: maturase Location: 1256225-1256447 bp Feature: domain Description: GIIM Note: maturase Location: 1 256225-1 256447 bp Feature: gene Location: 1257277-1257456 bp Feature: gene Location: 1258540-1260084 bp Ori: QGH89412.1 Feature: domain Description: CHD Location: 1258756-1259170 bp Feature: domain Description: CHD Location: 1 258756-1 2591 70 bp Feature: domain Description: CHD Location: 1259398-1259887 bp Feature: domain Description: CHD Location: 1 259398-1 259887 bp Feature: gene Location: 2798382-2799521 bp Ori: QGH90862.1 Gene: recF_2 Feature: domain Description: AAA_21 Location: 2798454-2798523 bp Feature: domain Description: AAA_21 Location: 2798454-2798523 bp Feature: domain Description: AAA_21 Location: 2798997-2799327 bp Feature: domain Description: AAA_21 Location: 2798997-2799327 bp Feature: gene Location: 2799521-2800078 bp Feature: gene Location: 2800075-2803095 bp Ori: QGH90864.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2800570-2801041 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2800570-2801 041 bp Feature: gene Location: 2804010-2804873 bp Ori: QGH90865.1 Feature: domain Description: YeeA Location: 2804034-2804739 bp Feature: domain Description: YeeA Location: 2804034-2804739 bp Feature: gene Location: 2804877-2806748 bp Ori: QGH90866.1 Feature: domain Description: DUF262 Location: 2804925-2805693 bp Feature: domain Description: DUF262 Location: 2804925-2805693 bp Feature: gene Location: 5366452-5366904 bp Feature: gene Location: 5366888-5367142 bp Ori: QGH93205.1 Gene: sdhE Feature: domain Description: SdhE Location: 5366894-5367134 bp Feature: domain Description: SdhE Location: 5366894-53671 34 bp Feature: gene Location: 5367218-5368537 bp Ori: QGH93206.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5367221-5367797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5367221 -5367797 bp Feature: domain Description: YkfC Location: 5367995-5368151 bp Feature: domain Description: YkfC Location: 5367995-53681 51 bp Feature: domain Description: HNH Note: nucleases Location: 5368334-5368472 bp Feature: domain Description: HNH Note: nucleases Location: 5368334-5368472 bp Feature: gene Location: 5370260-5371204 bp Ori: QGH93207.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 5370269-5371169 bp Feature: domain Description: YgfZ Location: 5370269-5371 1 69 bp Feature: gene Location: 5371305-5372141 bp Ori: QGH93208.1 Feature: domain Description: HDOD Location: 5371308-5372136 bp Feature: domain Description: HDOD Location: 5371 308-53721 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), ABC_phnC (TIGR02315), DUF772 (pfam05598), CHD (cd07302), AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002)
DUF262 (pfam03235), SdhE (COG2938), YgfZ (COG0354), HDOD (pfam08668)