myRT

myRT report for GCA_009664165.1_ASM966416v1

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Seq: CP041945.1 Pseudomonas aeruginosa strain ST773 chromosome, complete genome (6835731 bp)
Overview 1 RT 1: 641502-651810 bp 2 RT 2: 668069-676262 bp Neighborhood of RT #1 [641502, 651812] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [668069, 676276] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 641502-642623 bp Ori: QGJ31370.1 Feature: domain Description: COG3177 Location: 641520-642612 bp Feature: domain Description: COG31 77 Location: 641 520-64261 2 bp Feature: gene Location: 642885-643046 bp Feature: gene Location: 643349-645034 bp Ori: QGJ31372.1 Gene: ltrA Feature: domain Description: RVT_N Location: 643406-643646 bp Feature: domain Description: RVT_N Location: 643406-643646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643694-644330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643694-644330 bp Feature: domain Description: GIIM Note: maturase Location: 644384-644615 bp Feature: domain Description: GIIM Note: maturase Location: 644384-64461 5 bp Feature: domain Description: HNH Note: nucleases Location: 644867-645005 bp Feature: domain Description: HNH Note: nucleases Location: 644867-645005 bp Feature: gene Location: 646115-649852 bp Ori: QGJ31373.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 646223-646880 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 646223-646880 bp Feature: domain Description: PRK09776 Location: 647093-647564 bp Feature: domain Description: PRK09776 Location: 647093-647564 bp Feature: domain Description: PAS Location: 647621-648146 bp Feature: domain Description: PAS Location: 647621 -6481 46 bp Feature: domain Description: PRK10060 Location: 648155-649802 bp Feature: domain Description: PRK1 0060 Location: 6481 55-649802 bp Feature: gene Location: 649959-651812 bp Ori: QGJ31374.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 649971-651810 bp Feature: domain Description: PRK05658 Location: 649971 -651 81 0 bp Feature: gene Location: 668069-669361 bp Ori: QGJ31393.1 Feature: domain Description: PRK10770 Location: 668159-669353 bp Feature: domain Description: PRK1 0770 Location: 6681 59-669353 bp Feature: gene Location: 669342-672143 bp Ori: QGJ31394.1 Feature: domain Description: LptD Location: 669537-672129 bp Feature: domain Description: LptD Location: 669537-6721 29 bp Feature: gene Location: 672276-673988 bp Ori: QGJ31395.1 Gene: ltrA Feature: domain Description: RVT_N Location: 672333-672576 bp Feature: domain Description: RVT_N Location: 672333-672576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672621-673257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672621 -673257 bp Feature: domain Description: YkfC Location: 673467-673617 bp Feature: domain Description: YkfC Location: 673467-67361 7 bp Feature: domain Description: HNH Note: nucleases Location: 673794-673932 bp Feature: domain Description: HNH Note: nucleases Location: 673794-673932 bp Feature: gene Location: 674133-674387 bp Feature: gene Location: 675260-676276 bp Ori: QGJ31397.1 Feature: domain Description: COG3178 Location: 675263-676262 bp Feature: domain Description: COG31 78 Location: 675263-676262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )