myRT

myRT report for GCA_009664245.1_ASM966424v1

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Seq: CP026526.1 Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence (1506823 bp)
Overview 1 RT 1: 672516-676377 bp 2 RT 2: 974106-980240 bp Neighborhood of RT #1 [672516, 676433] RVT-GII PRK07574 RepB Neighborhood of RT #2 [974106, 980245] LabA PRK13347 RVT-GII GIIM NorD Feature: gene Location: 672516-672965 bp Feature: gene Location: 672951-673154 bp Feature: gene Location: 673417-674502 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 673447-674134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 673447-6741 34 bp Feature: gene Location: 674730-675935 bp Ori: QGJ76729.1 Feature: domain Description: PRK07574 Location: 674739-675888 bp Feature: domain Description: PRK07574 Location: 674739-675888 bp Feature: gene Location: 676176-676433 bp Ori: QGJ77488.1 Feature: domain Description: RepB Location: 676233-676377 bp Feature: domain Description: RepB Location: 676233-676377 bp Feature: gene Location: 974106-974639 bp Ori: QGJ76978.1 Feature: domain Description: LabA Location: 974196-974604 bp Feature: domain Description: LabA Location: 9741 96-974604 bp Feature: gene Location: 975087-976439 bp Ori: QGJ76979.1 Gene: hemN Feature: domain Description: PRK13347 Location: 975105-976434 bp Feature: domain Description: PRK1 3347 Location: 9751 05-976434 bp Feature: gene Location: 976545-977906 bp Ori: QGJ76980.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 976872-977487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 976872-977487 bp Feature: domain Description: GIIM Note: maturase Location: 977541-977757 bp Feature: domain Description: GIIM Note: maturase Location: 977541 -977757 bp Feature: gene Location: 977960-978289 bp Feature: gene Location: 978350-980245 bp Ori: QGJ76981.1 Feature: domain Description: NorD Location: 978353-980240 bp Feature: domain Description: NorD Location: 978353-980240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK07574 (NAD-dependent formate dehydrogenase), RepB (pfam07506), LabA (COG1432), PRK13347 (coproporphyrinogen III oxidase; Provisional), GIIM (pfam08388), NorD (COG4548)

Seq: CP026529.1 Sinorhizobium meliloti strain AK21 plasmid pSmeAK21b, complete sequence (209149 bp)
Overview 1 RT 1: 41949-45856 bp Neighborhood of RT #1 [41949, 45867] TnpB_IS66 InsE RVT-GII PRK09834 Feature: gene Location: 41949-42302 bp Ori: QGJ79203.1 Feature: domain Description: TnpB_IS66 Location: 41976-42264 bp Feature: domain Description: TnpB_IS66 Location: 41976-42 2 64 bp Feature: gene Location: 42283-42741 bp Ori: QGJ79204.1 Feature: domain Description: InsE Location: 42328-42502 bp Feature: domain Description: InsE Location: 42 32 8-42 502 bp Feature: gene Location: 42854-44677 bp Ori: QGJ79205.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43592-44282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43592 -442 82 bp Feature: gene Location: 44738-44986 bp Feature: gene Location: 45082-45867 bp Ori: QGJ79206.1 Feature: domain Description: PRK09834 Location: 45097-45856 bp Feature: domain Description: PRK09834 Location: 45097-45856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), InsE (COG2963), RVT-GII, PRK09834 (DNA-binding transcriptional regulator)

Seq: CP026528.1 Sinorhizobium meliloti strain AK21 plasmid pSmeAK21a, complete sequence (151735 bp)
Overview 1 RT 1: 85030-87802 bp 2 RT 2: 147259-151322 bp Neighborhood of RT #1 [85030, 88029] DDE_Tnp_IS66_C RVT-GII InsE Neighborhood of RT #2 [147259, 151369] LysR RVT-GII DDE_Tnp_1_5 PRK13834 Feature: gene Location: 85030-85257 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 85105-85216 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 85105-85216 bp Feature: gene Location: 85257-85553 bp Feature: gene Location: 85639-86935 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85843-86533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85843 -8653 3 bp Feature: gene Location: 86993-87331 bp Feature: gene Location: 87580-88029 bp Ori: QGJ79153.1 Feature: domain Description: InsE Location: 87631-87802 bp Feature: domain Description: InsE Location: 8763 1-87802 bp Feature: gene Location: 147259-147454 bp Feature: gene Location: 147602-148492 bp Ori: QGJ79163.1 Feature: domain Description: LysR Location: 147614-148484 bp Feature: domain Description: LysR Location: 147614-148484 bp Feature: gene Location: 148611-150020 bp Ori: QGJ79164.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148965-149652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148965-149652 bp Feature: gene Location: 150592-150783 bp Feature: domain Description: DDE_Tnp_1_5 Location: 150688-150784 bp Feature: domain Description: DDE_Tnp_1_5 Location: 150688-150784 bp Feature: gene Location: 150800-151369 bp Ori: QGJ79165.1 Feature: domain Description: PRK13834 Location: 150803-151322 bp Feature: domain Description: PRK13 83 4 Location: 150803 -1513 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, InsE (COG2963), LysR (COG0583), DDE_Tnp_1_5 (pfam13737), PRK13834 (putative autoinducer synthesis protein; Provisional)

Seq: CP026527.1 Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence (1676618 bp)
Overview 1 RT 1: 827454-833608 bp 2 RT 2: 1162682-1167550 bp Neighborhood of RT #1 [827454, 833619] HTH_ARSR AraJ RVT-GII GIIM PRK09356 hutH Neighborhood of RT #2 [1162682, 1167550] IstB_IS21_ATP IstB_IS21 RVT-GII rve RVT-GII Feature: gene Location: 827454-827825 bp Ori: QGJ78263.1 Feature: domain Description: HTH_ARSR Location: 827511-827709 bp Feature: domain Description: HTH_ARSR Location: 827511-827709 bp Feature: gene Location: 827915-829099 bp Ori: QGJ78264.1 Feature: domain Description: AraJ Location: 827918-829076 bp Feature: domain Description: AraJ Location: 827918-829076 bp Feature: gene Location: 829276-830637 bp Ori: QGJ78265.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829603-830218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829603-830218 bp Feature: domain Description: GIIM Note: maturase Location: 830272-830488 bp Feature: domain Description: GIIM Note: maturase Location: 830272-8304 88 bp Feature: gene Location: 830840-832087 bp Ori: QGJ78266.1 Feature: domain Description: PRK09356 Location: 830876-832079 bp Feature: domain Description: PRK09356 Location: 830876-832079 bp Feature: gene Location: 832084-833619 bp Ori: QGJ78267.1 Gene: hutH Feature: domain Description: hutH Location: 832093-833608 bp Feature: domain Description: hutH Location: 832093-833608 bp Feature: gene Location: 1162682-1163419 bp Ori: QGJ78527.1 Feature: domain Description: IstB_IS21_ATP Location: 1162763-1162835 bp Feature: domain Description: IstB_IS21_ATP Location: 1162763-1162835 bp Feature: domain Description: IstB_IS21 Location: 1162841-1163372 bp Feature: domain Description: IstB_IS21 Location: 116284 1-1163372 bp Feature: gene Location: 1163323-1163520 bp Feature: gene Location: 1163615-1164503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1163618-1163810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1163618-1163810 bp Feature: gene Location: 1164541-1166124 bp Feature: domain Description: rve Location: 1165051-1165378 bp Feature: domain Description: rve Location: 1165051-1165378 bp Feature: gene Location: 1166235-1166714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1166562-1166715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1166562-1166715 bp Feature: gene Location: 1166768-1167096 bp Feature: gene Location: 1167212-1167550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), AraJ (COG2814), RVT-GII, GIIM (pfam08388), PRK09356 (imidazolonepropionase; Validated), hutH (TIGR01225), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), rve (pfam00665)