myRT

myRT report for GCA_009664345.1_ASM966434v1

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Seq: CP043547.1 Planctomycetales bacterium 10988 chromosome, complete genome (6649480 bp)
Overview 1 RT 1: 348170-355352 bp 2 RT 2: 512812-517721 bp 3 RT 3: 3433254-3445328 bp 4 RT 4: 4150399-4154917 bp 5 RT 5: 5578982-5579855 bp Neighborhood of RT #1 [348170, 355352] COG3547 Phage_integrase RVT-CRISPR-like Neighborhood of RT #2 [512812, 517721] FolA PHA02517 RVT-G2Lb Neighborhood of RT #3 [3433254, 3445328] PEGA WD40 Laminin_G_3 Phenol_MetA_deg RVT-Retrons Neighborhood of RT #4 [4150399, 4154940] PinE RVT-GII GIIM UPF0167 Neighborhood of RT #5 [5578982, 5580214] RVT-CRISPR-like Feature: gene Location: 348170-349153 bp Ori: QGJ68569.1 Feature: domain Description: COG3547 Location: 348188-349022 bp Feature: domain Description: COG3547 Location: 3481 88-349022 bp Feature: gene Location: 350204-351793 bp Ori: QGJ68570.1 Feature: domain Description: Phage_integrase Location: 350903-351710 bp Feature: domain Description: Phage_integrase Location: 350903-351 71 0 bp Feature: gene Location: 352585-353853 bp Ori: QGJ68571.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 352948-353494 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 352948-353494 bp Feature: gene Location: 353850-355352 bp Feature: gene Location: 512812-513354 bp Ori: QGJ68627.1 Feature: domain Description: FolA Location: 512836-513307 bp Feature: domain Description: FolA Location: 51 2836-51 3307 bp Feature: gene Location: 513410-513694 bp Ori: QGJ68628.1 Feature: domain Description: PHA02517 Location: 513428-513683 bp Feature: domain Description: PHA0251 7 Location: 51 3428-51 3683 bp Feature: gene Location: 514065-515423 bp Ori: QGJ68629.1 Feature: RT Description: RVT-G2Lb Note: G2Lb RT Location: 514887-515403 bp Feature: RT Description: RVT-G2Lb Note: G2Lb RT Location: 51 4887-51 5403 bp Feature: gene Location: 515587-516465 bp Feature: gene Location: 516882-517721 bp Feature: gene Location: 3433254-3438080 bp Ori: QGJ70471.1 Feature: domain Description: PEGA Location: 3434070-3434184 bp Feature: domain Description: PEGA Location: 3434070-34341 84 bp Feature: domain Description: WD40 Location: 3435471-3436173 bp Feature: domain Description: WD40 Location: 3435471 -34361 73 bp Feature: domain Description: Laminin_G_3 Location: 3437481-3437931 bp Feature: domain Description: Laminin_G_3 Location: 3437481 -3437931 bp Feature: gene Location: 3438404-3439333 bp Ori: QGJ70472.1 Feature: domain Description: Phenol_MetA_deg Location: 3438626-3439328 bp Feature: domain Description: Phenol_MetA_deg Location: 3438626-3439328 bp Feature: gene Location: 3439358-3441166 bp Ori: QGJ70473.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3440291-3440924 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3440291 -3440924 bp Feature: gene Location: 3441844-3443556 bp Feature: gene Location: 3443553-3445328 bp Feature: gene Location: 4150399-4150992 bp Ori: QGJ70883.1 Feature: domain Description: PinE Location: 4150402-4150972 bp Feature: domain Description: PinE Location: 41 50402-41 50972 bp Feature: gene Location: 4152079-4153032 bp Ori: QGJ70884.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4152082-4152616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 52082-41 5261 6 bp Feature: domain Description: GIIM Note: maturase Location: 4152664-4152868 bp Feature: domain Description: GIIM Note: maturase Location: 41 52664-41 52868 bp Feature: gene Location: 4153503-4154306 bp Feature: gene Location: 4154383-4154940 bp Ori: QGJ70886.1 Feature: domain Description: UPF0167 Location: 4154395-4154917 bp Feature: domain Description: UPF01 67 Location: 41 54395-41 5491 7 bp Feature: gene Location: 5578982-5580214 bp Ori: QGJ71776.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 5579309-5579855 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 5579309-5579855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), Phage_integrase (pfam00589), RVT-CRISPR, FolA (COG0262), PHA02517 (putative transposase OrfB; Reviewed), RVT-G2Lb, PEGA (pfam08308), WD40 (smart00320), Laminin_G_3 (pfam13385), Phenol_MetA_deg (pfam13557)
RVT-Retrons, PinE (COG1961), RVT-GII, GIIM (pfam08388), UPF0167 (pfam03691)