myRT

myRT report for GCA_009664535.1_ASM966453v1

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Seq: CP045941.1 Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome (4723195 bp)
Overview 1 RT 1: 890380-898140 bp 2 RT 2: 1018886-1023146 bp 3 RT 3: 1496429-1500319 bp 4 RT 4: 1737483-1741067 bp 5 RT 5: 2014227-2017806 bp 6 RT 6: 2579072-2582574 bp 7 RT 7: 2892654-2896260 bp 8 RT 8: 3359439-3362940 bp 9 RT 9: 3739553-3743280 bp 10 RT 10: 3761441-3765263 bp Neighborhood of RT #1 [890380, 898142] InsE RVT-GII GIIM PHA02517 Peptidase_S6 autotrans_barl Neighborhood of RT #2 [1018886, 1023146] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #3 [1496429, 1500336] InsE RVT-GII GIIM PHA02517 PRK09692 Neighborhood of RT #4 [1737483, 1741460] PRK15043 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #5 [2014227, 2017808] InsE RVT-GII GIIM PHA02517 FlhE Neighborhood of RT #6 [2579072, 2582962] Phage_pRha PHA02517 RVT-GII GIIM InsE Neighborhood of RT #7 [2892654, 2896260] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #8 [3359439, 3363328] DUF1133 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #9 [3739553, 3743307] InsE RVT-GII GIIM PHA02517 HTH_Tnp_1 Neighborhood of RT #10 [3761441, 3765263] InsE RVT-GII GIIM PHA02517 Feature: gene Location: 890380-891115 bp Feature: domain Description: InsE Location: 890383-890722 bp Feature: domain Description: InsE Location: 890383-890722 bp Feature: gene Location: 891108-891479 bp Feature: gene Location: 891788-893296 bp Ori: QGK14577.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892046-892778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892046-892778 bp Feature: domain Description: GIIM Note: maturase Location: 892853-893051 bp Feature: domain Description: GIIM Note: maturase Location: 892853-893051 bp Feature: gene Location: 893386-893859 bp Feature: domain Description: PHA02517 Location: 893392-893857 bp Feature: domain Description: PHA0251 7 Location: 893392-893857 bp Feature: gene Location: 894024-898142 bp Ori: QGK11538.1 Gene: pic Feature: domain Description: Peptidase_S6 Location: 894177-896349 bp Feature: domain Description: Peptidase_S6 Location: 8941 77-896349 bp Feature: domain Description: autotrans_barl Location: 896913-898140 bp Feature: domain Description: autotrans_barl Location: 89691 3-8981 40 bp Feature: gene Location: 1018886-1019574 bp Feature: domain Description: InsE Location: 1018895-1019186 bp Feature: domain Description: InsE Location: 1 01 8895-1 01 91 86 bp Feature: gene Location: 1019570-1019938 bp Feature: gene Location: 1020247-1021755 bp Ori: QGK14583.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020505-1021237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 020505-1 021 237 bp Feature: domain Description: GIIM Note: maturase Location: 1021312-1021510 bp Feature: domain Description: GIIM Note: maturase Location: 1 021 31 2-1 021 51 0 bp Feature: gene Location: 1021836-1022324 bp Feature: domain Description: PHA02517 Location: 1021839-1022313 bp Feature: domain Description: PHA0251 7 Location: 1 021 839-1 02231 3 bp Feature: gene Location: 1022331-1023146 bp Feature: gene Location: 1496429-1497117 bp Feature: domain Description: InsE Location: 1496438-1496729 bp Feature: domain Description: InsE Location: 1 496438-1 496729 bp Feature: gene Location: 1497113-1497481 bp Feature: gene Location: 1497790-1499298 bp Ori: QGK14601.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1498048-1498780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 498048-1 498780 bp Feature: domain Description: GIIM Note: maturase Location: 1498855-1499053 bp Feature: domain Description: GIIM Note: maturase Location: 1 498855-1 499053 bp Feature: gene Location: 1499379-1499867 bp Feature: domain Description: PHA02517 Location: 1499382-1499856 bp Feature: domain Description: PHA0251 7 Location: 1 499382-1 499856 bp Feature: gene Location: 1499842-1500336 bp Ori: QGK14600.1 Feature: domain Description: PRK09692 Location: 1499848-1500319 bp Feature: domain Description: PRK09692 Location: 1 499848-1 50031 9 bp Feature: gene Location: 1737483-1737984 bp Feature: domain Description: PRK15043 Location: 1737531-1737855 bp Feature: domain Description: PRK1 5043 Location: 1 737531 -1 737855 bp Feature: gene Location: 1737981-1738454 bp Feature: domain Description: PHA02517 Location: 1737987-1738452 bp Feature: domain Description: PHA0251 7 Location: 1 737987-1 738452 bp Feature: gene Location: 1738544-1740052 bp Ori: QGK14607.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1738802-1739534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 738802-1 739534 bp Feature: domain Description: GIIM Note: maturase Location: 1739609-1739807 bp Feature: domain Description: GIIM Note: maturase Location: 1 739609-1 739807 bp Feature: gene Location: 1740361-1740732 bp Feature: gene Location: 1740725-1741460 bp Feature: domain Description: InsE Location: 1740728-1741067 bp Feature: domain Description: InsE Location: 1 740728-1 741 067 bp Feature: gene Location: 2014227-2014962 bp Feature: domain Description: InsE Location: 2014230-2014569 bp Feature: domain Description: InsE Location: 201 4230-201 4569 bp Feature: gene Location: 2014955-2015326 bp Feature: gene Location: 2015635-2017143 bp Ori: QGK14625.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2015893-2016625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 5893-201 6625 bp Feature: domain Description: GIIM Note: maturase Location: 2016700-2016898 bp Feature: domain Description: GIIM Note: maturase Location: 201 6700-201 6898 bp Feature: gene Location: 2017233-2017706 bp Feature: domain Description: PHA02517 Location: 2017239-2017704 bp Feature: domain Description: PHA0251 7 Location: 201 7239-201 7704 bp Feature: gene Location: 2017740-2017808 bp Feature: domain Description: FlhE Location: 2017746-2017806 bp Feature: domain Description: FlhE Location: 201 7746-201 7806 bp Feature: gene Location: 2579072-2579254 bp Ori: QGK12855.1 Feature: domain Description: Phage_pRha Location: 2579141-2579228 bp Feature: domain Description: Phage_pRha Location: 25791 41 -2579228 bp Feature: gene Location: 2579632-2580120 bp Feature: domain Description: PHA02517 Location: 2579635-2580109 bp Feature: domain Description: PHA0251 7 Location: 2579635-25801 09 bp Feature: gene Location: 2580201-2581709 bp Ori: QGK14652.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2580459-2581191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2580459-2581 1 91 bp Feature: domain Description: GIIM Note: maturase Location: 2581266-2581464 bp Feature: domain Description: GIIM Note: maturase Location: 2581 266-2581 464 bp Feature: gene Location: 2582018-2582386 bp Feature: gene Location: 2582382-2582962 bp Feature: domain Description: InsE Location: 2582385-2582574 bp Feature: domain Description: InsE Location: 2582385-2582574 bp Feature: gene Location: 2892654-2893389 bp Feature: domain Description: InsE Location: 2892657-2892996 bp Feature: domain Description: InsE Location: 2892657-2892996 bp Feature: gene Location: 2893382-2893753 bp Feature: gene Location: 2894062-2895570 bp Ori: QGK14671.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2894320-2895052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2894320-2895052 bp Feature: domain Description: GIIM Note: maturase Location: 2895127-2895325 bp Feature: domain Description: GIIM Note: maturase Location: 28951 27-2895325 bp Feature: gene Location: 2895660-2896133 bp Feature: domain Description: PHA02517 Location: 2895666-2896131 bp Feature: domain Description: PHA0251 7 Location: 2895666-28961 31 bp Feature: gene Location: 2896099-2896260 bp Feature: gene Location: 3359439-3359861 bp Ori: QGK13496.1 Feature: domain Description: DUF1133 Location: 3359442-3359835 bp Feature: domain Description: DUF1 1 33 Location: 3359442-3359835 bp Feature: gene Location: 3359890-3360378 bp Feature: domain Description: PHA02517 Location: 3359893-3360367 bp Feature: domain Description: PHA0251 7 Location: 3359893-3360367 bp Feature: gene Location: 3360459-3361967 bp Ori: QGK14701.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3360717-3361449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336071 7-3361 449 bp Feature: domain Description: GIIM Note: maturase Location: 3361524-3361722 bp Feature: domain Description: GIIM Note: maturase Location: 3361 524-3361 722 bp Feature: gene Location: 3362276-3362644 bp Feature: gene Location: 3362640-3363328 bp Feature: domain Description: InsE Location: 3362649-3362940 bp Feature: domain Description: InsE Location: 3362649-3362940 bp Feature: gene Location: 3739553-3740288 bp Feature: domain Description: InsE Location: 3739556-3739895 bp Feature: domain Description: InsE Location: 3739556-3739895 bp Feature: gene Location: 3740281-3740652 bp Feature: gene Location: 3740961-3742469 bp Ori: QGK14717.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3741219-3741951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3741 21 9-3741 951 bp Feature: domain Description: GIIM Note: maturase Location: 3742026-3742224 bp Feature: domain Description: GIIM Note: maturase Location: 3742026-3742224 bp Feature: gene Location: 3742559-3743032 bp Feature: domain Description: PHA02517 Location: 3742565-3743030 bp Feature: domain Description: PHA0251 7 Location: 3742565-3743030 bp Feature: gene Location: 3742998-3743307 bp Ori: QGK13793.1 Feature: domain Description: HTH_Tnp_1 Location: 3743076-3743280 bp Feature: domain Description: HTH_Tnp_1 Location: 3743076-3743280 bp Feature: gene Location: 3761441-3762176 bp Feature: domain Description: InsE Location: 3761444-3761783 bp Feature: domain Description: InsE Location: 3761 444-3761 783 bp Feature: gene Location: 3762169-3762540 bp Feature: gene Location: 3762849-3764357 bp Ori: QGK14718.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3763107-3763839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37631 07-3763839 bp Feature: domain Description: GIIM Note: maturase Location: 3763914-3764112 bp Feature: domain Description: GIIM Note: maturase Location: 376391 4-37641 1 2 bp Feature: gene Location: 3764447-3764920 bp Feature: domain Description: PHA02517 Location: 3764453-3764918 bp Feature: domain Description: PHA0251 7 Location: 3764453-376491 8 bp Feature: gene Location: 3764886-3765263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PRK09692 (Integrase; provisional), PRK15043 (HTH-type transcriptional regulator MlrA), FlhE (pfam06366), Phage_pRha (pfam09669)
DUF1133 (pfam06576), HTH_Tnp_1 (pfam01527)

Seq: CP045942.1 Shigella flexneri 2a strain AUSMDU00010535 plasmid pAUSMDU00010535_01, complete sequence (234182 bp)
Overview 1 RT 1: 43423-46458 bp 2 RT 2: 56970-60782 bp 3 RT 3: 82414-86003 bp 4 RT 4: 160583-163631 bp 5 RT 5: 172696-175712 bp 6 RT 6: 203589-207716 bp Neighborhood of RT #1 [43423, 47325] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 InsE Neighborhood of RT #2 [56970, 61014] InsE RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [82414, 86163] InsE RVT-GII GIIM PHA02517 PHA02517 Neighborhood of RT #4 [160583, 163630] Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #5 [172696, 175732] OrfB_IS605 DDE_Tnp_IS66_C RVT-GII Tra5 PAP2_acid_phosphatase Neighborhood of RT #6 [203589, 207716] InsE RVT-GII GIIM PHA02517 Feature: gene Location: 43423-43905 bp Feature: domain Description: COG3547 Location: 43441-43894 bp Feature: domain Description: COG3547 Location: 43441-43894 bp Feature: gene Location: 43935-44114 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 43980-44091 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 43980-44091 bp Feature: gene Location: 44197-45375 bp Ori: QGK14924.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44344-44998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44344-44998 bp Feature: domain Description: GIIM Note: maturase Location: 45076-45298 bp Feature: domain Description: GIIM Note: maturase Location: 45076-452 98 bp Feature: gene Location: 45900-46079 bp Feature: domain Description: DDE_Tnp_IS66 Location: 45906-46062 bp Feature: domain Description: DDE_Tnp_IS66 Location: 45906-46062 bp Feature: gene Location: 46116-47325 bp Feature: domain Description: InsE Location: 46119-46458 bp Feature: domain Description: InsE Location: 46119-46458 bp Feature: gene Location: 56970-57705 bp Feature: domain Description: InsE Location: 56973-57312 bp Feature: domain Description: InsE Location: 56973-57312 bp Feature: gene Location: 57698-58069 bp Feature: gene Location: 58378-59886 bp Ori: QGK14925.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58636-59368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58636-59368 bp Feature: domain Description: GIIM Note: maturase Location: 59443-59641 bp Feature: domain Description: GIIM Note: maturase Location: 59443-59641 bp Feature: gene Location: 59970-60404 bp Feature: domain Description: PHA02517 Location: 59973-60405 bp Feature: domain Description: PHA02 517 Location: 59973-60405 bp Feature: gene Location: 60491-61014 bp Feature: domain Description: InsE Location: 60494-60782 bp Feature: domain Description: InsE Location: 60494-60782 bp Feature: gene Location: 82414-83149 bp Feature: domain Description: InsE Location: 82417-82756 bp Feature: domain Description: InsE Location: 82 417-82 756 bp Feature: gene Location: 83142-83513 bp Feature: gene Location: 83822-85330 bp Ori: QGK14926.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84080-84812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84080-84812 bp Feature: domain Description: GIIM Note: maturase Location: 84887-85085 bp Feature: domain Description: GIIM Note: maturase Location: 84887-85085 bp Feature: gene Location: 85414-85848 bp Feature: domain Description: PHA02517 Location: 85417-85849 bp Feature: domain Description: PHA02 517 Location: 85417-85849 bp Feature: gene Location: 85775-86163 bp Feature: domain Description: PHA02517 Location: 85790-86003 bp Feature: domain Description: PHA02 517 Location: 85790-86003 bp Feature: gene Location: 160583-161012 bp Feature: domain Description: Y2_Tnp Location: 160592-160763 bp Feature: domain Description: Y2 _Tnp Location: 160592 -160763 bp Feature: gene Location: 161060-161425 bp Feature: gene Location: 162145-162384 bp Ori: QGK14870.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162151-162358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 151-162 358 bp Feature: gene Location: 162579-162945 bp Feature: gene Location: 162947-163630 bp Feature: domain Description: InsE Location: 162950-163193 bp Feature: domain Description: InsE Location: 162 950-163193 bp Feature: domain Description: PHA02517 Location: 163454-163631 bp Feature: domain Description: PHA02 517 Location: 163454-163631 bp Feature: gene Location: 172696-172866 bp Feature: domain Description: OrfB_IS605 Location: 172702-172864 bp Feature: domain Description: OrfB_IS605 Location: 172 702 -172 864 bp Feature: gene Location: 172945-173058 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 172948-173038 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 172 948-173038 bp Feature: gene Location: 173192-174374 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173492-174041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173492 -174041 bp Feature: gene Location: 174387-174605 bp Feature: domain Description: Tra5 Location: 174396-174588 bp Feature: domain Description: Tra5 Location: 174396-174588 bp Feature: gene Location: 174983-175732 bp Ori: QGK14874.1 Feature: domain Description: PAP2_acid_phosphatase Location: 175058-175712 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 175058-175712 bp Feature: gene Location: 203589-204324 bp Feature: domain Description: InsE Location: 203592-203931 bp Feature: domain Description: InsE Location: 2 03592 -2 03931 bp Feature: gene Location: 204317-204688 bp Feature: gene Location: 204997-206505 bp Ori: QGK14930.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205255-205987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 052 55-2 05987 bp Feature: domain Description: GIIM Note: maturase Location: 206062-206260 bp Feature: domain Description: GIIM Note: maturase Location: 2 06062 -2 062 60 bp Feature: gene Location: 206595-207068 bp Feature: domain Description: PHA02517 Location: 206601-207066 bp Feature: domain Description: PHA02 517 Location: 2 06601-2 07066 bp Feature: gene Location: 207392-207716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Y2_Tnp (pfam04986), OrfB_IS605 (pfam01385), Tra5 (COG2801)
PAP2_acid_phosphatase (cd03397)