myRT

myRT report for GCA_009664715.1_ASM966471v1

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Seq: CP045963.1 Mycobacterium chimaera strain AUSMDU00007395 chromosome, complete genome (6180270 bp)
Overview 1 RT 1: 967757-974703 bp 2 RT 2: 1044885-1050737 bp 3 RT 3: 2217420-2223776 bp 4 RT 4: 4563206-4568352 bp Neighborhood of RT #1 [967757, 974703] CzcO RVT_N RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 Neighborhood of RT #2 [1044885, 1050748] MhpC RVT-GII GIIM TetR_N TetR_C_35 CypX Neighborhood of RT #3 [2217420, 2223787] RVT-GII GIIM NuoN NuoM Neighborhood of RT #4 [4563206, 4568352] LZ_Tnp_IS481 Tra5 RVT-GII GIIM AdaB Feature: gene Location: 967757-968780 bp Feature: domain Description: CzcO Location: 967763-967949 bp Feature: domain Description: CzcO Location: 967763-967949 bp Feature: gene Location: 968812-970124 bp Feature: gene Location: 970309-972096 bp Ori: QGK51457.1 Gene: ltrA Feature: domain Description: RVT_N Location: 970339-970576 bp Feature: domain Description: RVT_N Location: 970339-970576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970636-971296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970636-971 296 bp Feature: domain Description: GIIM Note: maturase Location: 971365-971596 bp Feature: domain Description: GIIM Note: maturase Location: 971 365-971 596 bp Feature: gene Location: 972809-974047 bp Ori: QGK47269.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 972821-973292 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 972821 -973292 bp Feature: domain Description: Transposase_20 Location: 973634-973886 bp Feature: domain Description: Transposase_20 Location: 973634-973886 bp Feature: gene Location: 974380-974703 bp Feature: gene Location: 1044885-1045781 bp Ori: QGK47311.1 Feature: domain Description: MhpC Location: 1044909-1045761 bp Feature: domain Description: MhpC Location: 1 044909-1 045761 bp Feature: gene Location: 1045829-1046044 bp Feature: gene Location: 1046574-1048022 bp Ori: QGK51469.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1046892-1047579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 046892-1 047579 bp Feature: domain Description: GIIM Note: maturase Location: 1047654-1047849 bp Feature: domain Description: GIIM Note: maturase Location: 1 047654-1 047849 bp Feature: gene Location: 1048730-1049359 bp Ori: QGK47313.1 Feature: domain Description: TetR_N Location: 1048787-1048919 bp Feature: domain Description: TetR_N Location: 1 048787-1 04891 9 bp Feature: domain Description: TetR_C_35 Location: 1048988-1049321 bp Feature: domain Description: TetR_C_35 Location: 1 048988-1 049321 bp Feature: gene Location: 1049447-1050748 bp Ori: QGK47314.1 Feature: domain Description: CypX Location: 1049522-1050737 bp Feature: domain Description: CypX Location: 1 049522-1 050737 bp Feature: gene Location: 2217420-2217569 bp Feature: gene Location: 2217773-2218048 bp Feature: gene Location: 2218348-2219742 bp Ori: QGK51594.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2218612-2219308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 861 2-221 9308 bp Feature: domain Description: GIIM Note: maturase Location: 2219377-2219590 bp Feature: domain Description: GIIM Note: maturase Location: 221 9377-221 9590 bp Feature: gene Location: 2220875-2222275 bp Ori: QGK51595.1 Feature: domain Description: NuoN Location: 2220890-2222261 bp Feature: domain Description: NuoN Location: 2220890-2222261 bp Feature: gene Location: 2222297-2223787 bp Ori: QGK48198.1 Feature: domain Description: NuoM Location: 2222300-2223776 bp Feature: domain Description: NuoM Location: 2222300-2223776 bp Feature: gene Location: 4563206-4563466 bp Feature: gene Location: 4563592-4565430 bp Ori: QGK50000.1 Feature: domain Description: LZ_Tnp_IS481 Location: 4563670-4563844 bp Feature: domain Description: LZ_Tnp_IS481 Location: 4563670-4563844 bp Feature: domain Description: Tra5 Location: 4563847-4564507 bp Feature: domain Description: Tra5 Location: 4563847-4564507 bp Feature: gene Location: 4566115-4567509 bp Ori: QGK51832.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4566379-4567075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4566379-4567075 bp Feature: domain Description: GIIM Note: maturase Location: 4567144-4567363 bp Feature: domain Description: GIIM Note: maturase Location: 45671 44-4567363 bp Feature: gene Location: 4567767-4567991 bp Feature: domain Description: AdaB Location: 4567770-4567962 bp Feature: domain Description: AdaB Location: 4567770-4567962 bp Feature: gene Location: 4568044-4568352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CzcO (COG2072), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), MhpC (COG0596), TetR_N (pfam00440), TetR_C_35 (pfam18556), CypX (COG2124)
NuoN (COG1007), NuoM (COG1008), LZ_Tnp_IS481 (pfam13011), Tra5 (COG2801), AdaB (COG0350)

Seq: CP045966.1 Mycobacterium chimaera strain AUSMDU00007395 plasmid pAUSMDU00007395_03, complete sequence (32137 bp)
Overview 1 RT 1: 21338-25354 bp Neighborhood of RT #1 [21338, 25354] HAUS5 RVT-UG23 PinE Feature: gene Location: 21338-21468 bp Feature: gene Location: 21618-22244 bp Ori: QGK52132.1 Feature: domain Description: HAUS5 Location: 21960-22224 bp Feature: domain Description: HAUS5 Location: 2 1960-2 2 2 2 4 bp Feature: gene Location: 22643-24187 bp Ori: QGK52133.1 Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 22841-23492 bp Feature: RT Description: RVT-UG2 3 Note: UG2 3 RT Location: 2 2 841-2 3492 bp Feature: gene Location: 24420-25007 bp Ori: QGK52146.1 Feature: domain Description: PinE Location: 24432-24987 bp Feature: domain Description: PinE Location: 2 4432 -2 4987 bp Feature: gene Location: 25004-25354 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAUS5 (pfam14817), RVT-UG23, PinE (COG1961)