myRT

myRT report for GCA_009665195.1_ASM966519v1

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Seq: CP035682.1 Vibrio mimicus strain 2011V-1073 chromosome 1, complete sequence (3115368 bp)
Overview 1 RT 1: 293465-299749 bp 2 RT 2: 319728-325489 bp 3 RT 3: 788149-793387 bp 4 RT 4: 902160-909755 bp 5 RT 5: 1279068-1284829 bp 6 RT 6: 1431409-1436735 bp 7 RT 7: 1442810-1447276 bp 8 RT 8: 1609900-1614503 bp 9 RT 9: 2075636-2082879 bp 10 RT 10: 2122147-2127485 bp Neighborhood of RT #1 [293465, 299754] PRK04964 DUF4250 RVT-GII GIIM PRK05297 Neighborhood of RT #2 [319728, 325641] PRK09692 RVT-GII GIIM M60-like_N Peptidase_M60 Neighborhood of RT #3 [788149, 793395] RraB PRK01388 RVT-GII GIIM FNR_iron_sulfur_binding_1 PRK07609 Neighborhood of RT #4 [902160, 909814] nudC Rsd RVT-GII GIIM PRK00566 Neighborhood of RT #5 [1279068, 1284864] hemN RVT-GII GIIM HemY HemX Neighborhood of RT #6 [1431409, 1436752] groEL RVT-GII GIIM EFP_modif_epmB Neighborhood of RT #7 [1442810, 1447278] SecB RVT-GII GIIM gpsA cysE Neighborhood of RT #8 [1609900, 1614514] ilvH RVT-GII GIIM PRK11790 PRK00702 Neighborhood of RT #9 [2075636, 2082917] PRK13805 RVT-GII GIIM RhaT SUL1 Neighborhood of RT #10 [2122147, 2127485] DCR_FMN Pyr_redox_2 RVT-GII GIIM PurU Feature: gene Location: 293465-293668 bp Feature: domain Description: PRK04964 Location: 293474-293666 bp Feature: domain Description: PRK04964 Location: 293474-293666 bp Feature: gene Location: 293674-293865 bp Feature: domain Description: DUF4250 Location: 293698-293860 bp Feature: domain Description: DUF4250 Location: 293698-293860 bp Feature: gene Location: 293947-295260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294166-294778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2941 66-294778 bp Feature: domain Description: GIIM Note: maturase Location: 294832-295048 bp Feature: domain Description: GIIM Note: maturase Location: 294832-295048 bp Feature: gene Location: 295452-295733 bp Feature: gene Location: 295861-299754 bp Feature: domain Description: PRK05297 Location: 295864-299749 bp Feature: domain Description: PRK05297 Location: 295864-299749 bp Feature: gene Location: 319728-319886 bp Feature: gene Location: 320011-320292 bp Feature: domain Description: PRK09692 Location: 320014-320290 bp Feature: domain Description: PRK09692 Location: 32001 4-320290 bp Feature: gene Location: 320912-322225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321131-321743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 1 31 -321 743 bp Feature: domain Description: GIIM Note: maturase Location: 321797-322013 bp Feature: domain Description: GIIM Note: maturase Location: 321 797-32201 3 bp Feature: gene Location: 322417-322698 bp Feature: gene Location: 322804-325641 bp Feature: domain Description: M60-like_N Location: 324307-324571 bp Feature: domain Description: M60-like_N Location: 324307-324571 bp Feature: domain Description: Peptidase_M60 Location: 324616-325489 bp Feature: domain Description: Peptidase_M60 Location: 32461 6-325489 bp Feature: gene Location: 788149-788571 bp Feature: domain Description: RraB Location: 788185-788569 bp Feature: domain Description: RraB Location: 7881 85-788569 bp Feature: gene Location: 789193-790416 bp Feature: domain Description: PRK01388 Location: 789199-790414 bp Feature: domain Description: PRK01 388 Location: 7891 99-79041 4 bp Feature: gene Location: 790451-791764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790670-791282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790670-791 282 bp Feature: domain Description: GIIM Note: maturase Location: 791336-791552 bp Feature: domain Description: GIIM Note: maturase Location: 791 336-791 552 bp Feature: gene Location: 791956-792237 bp Feature: gene Location: 792340-793395 bp Feature: domain Description: FNR_iron_sulfur_binding_1 Location: 792376-793078 bp Feature: domain Description: FNR_iron_sulfur_binding_1 Location: 792376-793078 bp Feature: domain Description: PRK07609 Location: 793141-793387 bp Feature: domain Description: PRK07609 Location: 7931 41 -793387 bp Feature: gene Location: 902160-902969 bp Feature: domain Description: nudC Location: 902199-902946 bp Feature: domain Description: nudC Location: 9021 99-902946 bp Feature: gene Location: 903114-903608 bp Feature: domain Description: Rsd Location: 903123-903597 bp Feature: domain Description: Rsd Location: 9031 23-903597 bp Feature: gene Location: 903705-905018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903924-904536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903924-904536 bp Feature: domain Description: GIIM Note: maturase Location: 904590-904806 bp Feature: domain Description: GIIM Note: maturase Location: 904590-904806 bp Feature: gene Location: 905210-905491 bp Feature: gene Location: 905609-909814 bp Feature: domain Description: PRK00566 Location: 905642-909755 bp Feature: domain Description: PRK00566 Location: 905642-909755 bp Feature: gene Location: 1279068-1280510 bp Feature: domain Description: hemN Location: 1279161-1280508 bp Feature: domain Description: hemN Location: 1 2791 61 -1 280508 bp Feature: gene Location: 1280587-1280760 bp Feature: gene Location: 1281097-1282410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1281316-1281928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 281 31 6-1 281 928 bp Feature: domain Description: GIIM Note: maturase Location: 1281982-1282198 bp Feature: domain Description: GIIM Note: maturase Location: 1 281 982-1 2821 98 bp Feature: gene Location: 1282463-1283659 bp Feature: domain Description: HemY Location: 1282466-1283654 bp Feature: domain Description: HemY Location: 1 282466-1 283654 bp Feature: gene Location: 1283656-1284864 bp Feature: domain Description: HemX Location: 1283752-1284829 bp Feature: domain Description: HemX Location: 1 283752-1 284829 bp Feature: gene Location: 1431409-1433043 bp Feature: domain Description: groEL Location: 1431415-1433038 bp Feature: domain Description: groEL Location: 1 431 41 5-1 433038 bp Feature: gene Location: 1433124-1433297 bp Feature: gene Location: 1433634-1434947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1433853-1434465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 433853-1 434465 bp Feature: domain Description: GIIM Note: maturase Location: 1434519-1434735 bp Feature: domain Description: GIIM Note: maturase Location: 1 43451 9-1 434735 bp Feature: gene Location: 1435132-1435692 bp Feature: gene Location: 1435730-1436752 bp Feature: domain Description: EFP_modif_epmB Location: 1435778-1436735 bp Feature: domain Description: EFP_modif_epmB Location: 1 435778-1 436735 bp Feature: gene Location: 1442810-1443280 bp Feature: domain Description: SecB Location: 1442816-1443260 bp Feature: domain Description: SecB Location: 1 44281 6-1 443260 bp Feature: gene Location: 1443375-1443548 bp Feature: gene Location: 1443885-1445198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1444104-1444716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4441 04-1 44471 6 bp Feature: domain Description: GIIM Note: maturase Location: 1444770-1444986 bp Feature: domain Description: GIIM Note: maturase Location: 1 444770-1 444986 bp Feature: gene Location: 1445349-1446383 bp Feature: domain Description: gpsA Location: 1445394-1446363 bp Feature: domain Description: gpsA Location: 1 445394-1 446363 bp Feature: gene Location: 1446457-1447278 bp Feature: domain Description: cysE Location: 1446460-1447276 bp Feature: domain Description: cysE Location: 1 446460-1 447276 bp Feature: gene Location: 1609900-1610394 bp Feature: domain Description: ilvH Location: 1609903-1610383 bp Feature: domain Description: ilvH Location: 1 609903-1 61 0383 bp Feature: gene Location: 1610475-1610648 bp Feature: gene Location: 1610985-1612298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1611204-1611816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 1 204-1 61 1 81 6 bp Feature: domain Description: GIIM Note: maturase Location: 1611870-1612086 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 1 870-1 61 2086 bp Feature: gene Location: 1612374-1613603 bp Feature: domain Description: PRK11790 Location: 1612377-1613598 bp Feature: domain Description: PRK1 1 790 Location: 1 61 2377-1 61 3598 bp Feature: gene Location: 1613858-1614514 bp Feature: domain Description: PRK00702 Location: 1613861-1614503 bp Feature: domain Description: PRK00702 Location: 1 61 3861 -1 61 4503 bp Feature: gene Location: 2075636-2078323 bp Feature: domain Description: PRK13805 Location: 2075645-2078219 bp Feature: domain Description: PRK1 3805 Location: 2075645-207821 9 bp Feature: gene Location: 2078425-2078598 bp Feature: gene Location: 2078935-2080248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2079154-2079766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20791 54-2079766 bp Feature: domain Description: GIIM Note: maturase Location: 2079820-2080036 bp Feature: domain Description: GIIM Note: maturase Location: 2079820-2080036 bp Feature: gene Location: 2080360-2081235 bp Feature: domain Description: RhaT Location: 2080369-2081230 bp Feature: domain Description: RhaT Location: 2080369-2081 230 bp Feature: gene Location: 2081358-2082917 bp Feature: domain Description: SUL1 Location: 2081376-2082879 bp Feature: domain Description: SUL1 Location: 2081 376-2082879 bp Feature: gene Location: 2122147-2124213 bp Feature: domain Description: DCR_FMN Location: 2122228-2123284 bp Feature: domain Description: DCR_FMN Location: 21 22228-21 23284 bp Feature: domain Description: Pyr_redox_2 Location: 2123332-2124094 bp Feature: domain Description: Pyr_redox_2 Location: 21 23332-21 24094 bp Feature: gene Location: 2124296-2124469 bp Feature: gene Location: 2124806-2126119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2125025-2125637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 25025-21 25637 bp Feature: domain Description: GIIM Note: maturase Location: 2125691-2125907 bp Feature: domain Description: GIIM Note: maturase Location: 21 25691 -21 25907 bp Feature: gene Location: 2126174-2127007 bp Feature: domain Description: PurU Location: 2126189-2127005 bp Feature: domain Description: PurU Location: 21 261 89-21 27005 bp Feature: gene Location: 2127279-2127485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK04964 (hypothetical protein; Provisional), DUF4250 (pfam14056), RVT-GII, GIIM (pfam08388), PRK05297 (phosphoribosylformylglycinamidine synthase; Provisional), PRK09692 (Integrase; provisional), M60-like_N (pfam17291), Peptidase_M60 (pfam13402), RraB (pfam06877), PRK01388 (arginine deiminase; Provisional)
FNR_iron_sulfur_binding_1 (cd06215), PRK07609 (CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated), nudC (PRK00241), Rsd (COG3160), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), hemN (TIGR00538), HemY (COG3071), HemX (pfam04375), groEL (PRK12852), EFP_modif_epmB (TIGR03821)
SecB (pfam02556), gpsA (PRK00094), cysE (TIGR01172), ilvH (PRK11895), PRK11790 (phosphoglycerate dehydrogenase), PRK00702 (ribose-5-phosphate isomerase RpiA), PRK13805 (bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional), RhaT (TIGR00776), SUL1 (COG0659), DCR_FMN (cd02930)
Pyr_redox_2 (pfam07992), PurU (TIGR00655)

Seq: CP035683.1 Vibrio mimicus strain 2011V-1073 chromosome 2, complete sequence (1360846 bp)
Overview 1 RT 1: 621322-627201 bp 2 RT 2: 1006593-1014706 bp Neighborhood of RT #1 [621322, 627201] COG3046 PRK13211 RVT-GII GIIM Neighborhood of RT #2 [1006593, 1014708] P_ylase PRK04841 RVT-GII GIIM PRK11020 Feature: gene Location: 621322-622872 bp Feature: domain Description: COG3046 Location: 621337-622864 bp Feature: domain Description: COG3046 Location: 62 1337-62 2 864 bp Feature: gene Location: 623363-624820 bp Feature: domain Description: PRK13211 Location: 623366-624815 bp Feature: domain Description: PRK132 11 Location: 62 3366-62 4815 bp Feature: gene Location: 624870-626183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 625089-625701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 5089-62 5701 bp Feature: domain Description: GIIM Note: maturase Location: 625755-625971 bp Feature: domain Description: GIIM Note: maturase Location: 62 5755-62 5971 bp Feature: gene Location: 626375-626656 bp Feature: gene Location: 626821-627201 bp Feature: gene Location: 1006593-1009046 bp Feature: domain Description: P_ylase Location: 1006650-1009029 bp Feature: domain Description: P_ylase Location: 1006650-100902 9 bp Feature: gene Location: 1009624-1012332 bp Feature: domain Description: PRK04841 Location: 1009627-1012330 bp Feature: domain Description: PRK04841 Location: 100962 7-1012 330 bp Feature: gene Location: 1012382-1013695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012601-1013213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012 601-10132 13 bp Feature: domain Description: GIIM Note: maturase Location: 1013267-1013483 bp Feature: domain Description: GIIM Note: maturase Location: 10132 67-1013483 bp Feature: gene Location: 1013887-1014168 bp Feature: gene Location: 1014289-1014708 bp Feature: domain Description: PRK11020 Location: 1014355-1014706 bp Feature: domain Description: PRK1102 0 Location: 1014355-1014706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3046 (Uncharacterized protein related to deoxyribodipyrimidine photolyase ), PRK13211 (N-acetylglucosamine-binding protein GbpA), RVT-GII, GIIM (pfam08388), P_ylase (TIGR02093), PRK04841 (HTH-type transcriptional regulator MalT), PRK11020 (YibL family ribosome-associated protein)