myRT

myRT report for GCA_009665215.1_ASM966521v1

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Seq: CP035680.1 Vibrio navarrensis strain 08-2462 chromosome 1, complete sequence (3030337 bp)
Overview 1 RT 1: 479978-484959 bp 2 RT 2: 1784747-1789568 bp 3 RT 3: 1929526-1934110 bp 4 RT 4: 1969776-1973454 bp 5 RT 5: 2372806-2376617 bp 6 RT 6: 2520558-2525411 bp 7 RT 7: 2720687-2724007 bp Neighborhood of RT #1 [479978, 484967] PRK08840 YdiY RVT-GII GIIM RVT-GII L9 Neighborhood of RT #2 [1784747, 1789606] RVT-GII GIIM PRK10828 PRK07726 Neighborhood of RT #3 [1929526, 1934118] RVT-GII GIIM PRK07986 PRK15108 Neighborhood of RT #4 [1969776, 1973454] formate_focA RVT-GII GIIM Neighborhood of RT #5 [2372806, 2376617] GlnQ YccA_like RVT-GII GIIM Neighborhood of RT #6 [2520558, 2525411] PRK10790 RVT-GII GIIM Neighborhood of RT #7 [2720687, 2724007] PRK10801 PRK10800 RVT-GII GIIM Feature: gene Location: 479978-481372 bp Feature: domain Description: PRK08840 Location: 479981-481370 bp Feature: domain Description: PRK08840 Location: 479981 -481 370 bp Feature: gene Location: 481491-482303 bp Feature: domain Description: YdiY Location: 481530-482301 bp Feature: domain Description: YdiY Location: 481 530-482301 bp Feature: gene Location: 482423-483289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482426-482840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482426-482840 bp Feature: domain Description: GIIM Note: maturase Location: 482885-483110 bp Feature: domain Description: GIIM Note: maturase Location: 482885-4831 1 0 bp Feature: gene Location: 483298-483729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483514-483727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48351 4-483727 bp Feature: gene Location: 483968-484297 bp Feature: gene Location: 484515-484967 bp Feature: domain Description: L9 Location: 484518-484959 bp Feature: domain Description: L9 Location: 48451 8-484959 bp Feature: gene Location: 1784747-1784950 bp Feature: gene Location: 1785072-1785359 bp Feature: gene Location: 1785499-1786785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1785715-1786336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 78571 5-1 786336 bp Feature: domain Description: GIIM Note: maturase Location: 1786381-1786606 bp Feature: domain Description: GIIM Note: maturase Location: 1 786381 -1 786606 bp Feature: gene Location: 1786983-1787531 bp Feature: domain Description: PRK10828 Location: 1786986-1787526 bp Feature: domain Description: PRK1 0828 Location: 1 786986-1 787526 bp Feature: gene Location: 1787615-1789606 bp Feature: domain Description: PRK07726 Location: 1787624-1789568 bp Feature: domain Description: PRK07726 Location: 1 787624-1 789568 bp Feature: gene Location: 1929526-1929741 bp Feature: gene Location: 1929863-1930135 bp Feature: gene Location: 1930291-1931577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1930507-1931128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 930507-1 931 1 28 bp Feature: domain Description: GIIM Note: maturase Location: 1931173-1931398 bp Feature: domain Description: GIIM Note: maturase Location: 1 931 1 73-1 931 398 bp Feature: gene Location: 1931650-1932963 bp Feature: domain Description: PRK07986 Location: 1931689-1932961 bp Feature: domain Description: PRK07986 Location: 1 931 689-1 932961 bp Feature: gene Location: 1933066-1934118 bp Feature: domain Description: PRK15108 Location: 1933069-1934110 bp Feature: domain Description: PRK1 51 08 Location: 1 933069-1 9341 1 0 bp Feature: gene Location: 1969776-1970618 bp Feature: domain Description: formate_focA Location: 1969818-1970607 bp Feature: domain Description: formate_focA Location: 1 96981 8-1 970607 bp Feature: gene Location: 1970962-1971234 bp Feature: gene Location: 1971390-1972676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1971606-1972227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 971 606-1 972227 bp Feature: domain Description: GIIM Note: maturase Location: 1972272-1972497 bp Feature: domain Description: GIIM Note: maturase Location: 1 972272-1 972497 bp Feature: gene Location: 1972753-1972881 bp Feature: gene Location: 1973323-1973454 bp Feature: gene Location: 2372806-2373555 bp Feature: domain Description: GlnQ Location: 2372830-2373544 bp Feature: domain Description: GlnQ Location: 2372830-2373544 bp Feature: gene Location: 2373758-2374426 bp Feature: domain Description: YccA_like Location: 2373809-2374418 bp Feature: domain Description: YccA_like Location: 2373809-237441 8 bp Feature: gene Location: 2374511-2375797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2374727-2375348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2374727-2375348 bp Feature: domain Description: GIIM Note: maturase Location: 2375393-2375618 bp Feature: domain Description: GIIM Note: maturase Location: 2375393-237561 8 bp Feature: gene Location: 2376035-2376364 bp Feature: gene Location: 2376345-2376617 bp Feature: gene Location: 2520558-2522333 bp Feature: domain Description: PRK10790 Location: 2520570-2522313 bp Feature: domain Description: PRK1 0790 Location: 2520570-252231 3 bp Feature: gene Location: 2522731-2523279 bp Feature: gene Location: 2523356-2524642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2523572-2524193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2523572-25241 93 bp Feature: domain Description: GIIM Note: maturase Location: 2524238-2524463 bp Feature: domain Description: GIIM Note: maturase Location: 2524238-2524463 bp Feature: gene Location: 2524880-2525209 bp Feature: gene Location: 2525190-2525411 bp Feature: gene Location: 2720687-2721370 bp Feature: domain Description: PRK10801 Location: 2720705-2721362 bp Feature: domain Description: PRK1 0801 Location: 2720705-2721 362 bp Feature: gene Location: 2721360-2721779 bp Feature: domain Description: PRK10800 Location: 2721381-2721762 bp Feature: domain Description: PRK1 0800 Location: 2721 381 -2721 762 bp Feature: gene Location: 2721950-2723236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2722166-2722787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27221 66-2722787 bp Feature: domain Description: GIIM Note: maturase Location: 2722832-2723057 bp Feature: domain Description: GIIM Note: maturase Location: 2722832-2723057 bp Feature: gene Location: 2723476-2723805 bp Feature: gene Location: 2723786-2724007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08840 (replicative DNA helicase; Provisional), YdiY (COG3137), RVT-GII, GIIM (pfam08388), L9 (TIGR00158), PRK10828 (putative oxidoreductase; Provisional), PRK07726 (DNA topoisomerase 3), PRK07986 (adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated), PRK15108 (biotin synthase; Provisional), formate_focA (TIGR04060)
GlnQ (COG1126), YccA_like (cd10433), PRK10790 (SmdB family multidrug efflux ABC transporter permease/ATP-binding protein), PRK10801 (Tol-Pal system protein TolQ), PRK10800 (acyl-CoA thioesterase YbgC; Provisional)