myRT

myRT report for GCA_009665415.1_ASM966541v1

Download annotations/find similar RTs

Seq: CP035921.1 Vibrio cidicii strain 2423-01 chromosome 1, complete sequence (3226711 bp)
Overview 1 RT 1: 190103-194834 bp 2 RT 2: 2444073-2451959 bp 3 RT 3: 2789677-2798288 bp Neighborhood of RT #1 [190103, 194860] ABM GIY-YIG_SLX1_like RVT-GII GIIM CopG_antitoxin RelB Neighborhood of RT #2 [2444073, 2452066] PRK05297 DUF3622 RVT-GII GIIM COG3608 Neighborhood of RT #3 [2789677, 2798290] zntA PRK11178 RVT-GII GIIM DUF1887 4HB_MCP_1 Tar Feature: gene Location: 190103-190402 bp Feature: domain Description: ABM Location: 190106-190313 bp Feature: domain Description: ABM Location: 1 901 06-1 9031 3 bp Feature: gene Location: 190578-191651 bp Feature: domain Description: GIY-YIG_SLX1_like Location: 190926-191118 bp Feature: domain Description: GIY-YIG_SLX1 _like Location: 1 90926-1 91 1 1 8 bp Feature: gene Location: 191932-193245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192151-192763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 921 51 -1 92763 bp Feature: domain Description: GIIM Note: maturase Location: 192817-193021 bp Feature: domain Description: GIIM Note: maturase Location: 1 9281 7-1 93021 bp Feature: gene Location: 193849-194094 bp Feature: domain Description: CopG_antitoxin Location: 193942-194056 bp Feature: domain Description: CopG_antitoxin Location: 1 93942-1 94056 bp Feature: gene Location: 194582-194860 bp Feature: domain Description: RelB Location: 194591-194834 bp Feature: domain Description: RelB Location: 1 94591 -1 94834 bp Feature: gene Location: 2444073-2447981 bp Feature: domain Description: PRK05297 Location: 2444076-2447976 bp Feature: domain Description: PRK05297 Location: 2444076-2447976 bp Feature: gene Location: 2448140-2448457 bp Feature: domain Description: DUF3622 Location: 2448143-2448350 bp Feature: domain Description: DUF3622 Location: 24481 43-2448350 bp Feature: gene Location: 2449055-2450368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2449274-2449886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2449274-2449886 bp Feature: domain Description: GIIM Note: maturase Location: 2449940-2450144 bp Feature: domain Description: GIIM Note: maturase Location: 2449940-24501 44 bp Feature: gene Location: 2450427-2450927 bp Feature: gene Location: 2451008-2452066 bp Feature: domain Description: COG3608 Location: 2451020-2451959 bp Feature: domain Description: COG3608 Location: 2451 020-2451 959 bp Feature: gene Location: 2789677-2791992 bp Feature: domain Description: zntA Location: 2789749-2791978 bp Feature: domain Description: zntA Location: 2789749-2791 978 bp Feature: gene Location: 2792249-2793007 bp Feature: domain Description: PRK11178 Location: 2792258-2793005 bp Feature: domain Description: PRK1 1 1 78 Location: 2792258-2793005 bp Feature: gene Location: 2793610-2794923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2793829-2794441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2793829-2794441 bp Feature: domain Description: GIIM Note: maturase Location: 2794495-2794699 bp Feature: domain Description: GIIM Note: maturase Location: 2794495-2794699 bp Feature: gene Location: 2794972-2796132 bp Feature: domain Description: DUF1887 Location: 2794975-2796109 bp Feature: domain Description: DUF1 887 Location: 2794975-27961 09 bp Feature: gene Location: 2796299-2798290 bp Feature: domain Description: 4HB_MCP_1 Location: 2796311-2796701 bp Feature: domain Description: 4HB_MCP_1 Location: 279631 1 -2796701 bp Feature: domain Description: Tar Location: 2796935-2798288 bp Feature: domain Description: Tar Location: 2796935-2798288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABM (pfam03992), GIY-YIG_SLX1_like (cd10449), RVT-GII, GIIM (pfam08388), CopG_antitoxin (pfam12441), RelB (pfam04221), PRK05297 (phosphoribosylformylglycinamidine synthase; Provisional), DUF3622 (pfam12286), COG3608 (Predicted deacylase ), zntA (PRK11033)
PRK11178 (uridine phosphorylase; Provisional), DUF1887 (pfam09002), 4HB_MCP_1 (pfam12729), Tar (COG0840)

Seq: CP035922.1 Vibrio cidicii strain 2423-01 chromosome 2, complete sequence (1279655 bp)
Overview 1 RT 1: 348057-353777 bp 2 RT 2: 651908-660301 bp Neighborhood of RT #1 [348057, 353785] PBP2_PotD_PotF_like RVT-GII GIIM Acetyltransf_1 DUF3103 Neighborhood of RT #2 [651908, 660312] CarboxypepD_reg CarboxypepD_reg GH16_laminarinase_like RVT-GII GIIM Maltoporin-like PRK13503 Feature: gene Location: 348057-348431 bp Feature: gene Location: 348694-349728 bp Feature: domain Description: PBP2_PotD_PotF_like Location: 348772-349708 bp Feature: domain Description: PBP2 _PotD_PotF_like Location: 348772 -349708 bp Feature: gene Location: 350317-351630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350536-351148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350536-351148 bp Feature: domain Description: GIIM Note: maturase Location: 351202-351406 bp Feature: domain Description: GIIM Note: maturase Location: 3512 02 -351406 bp Feature: gene Location: 351784-352275 bp Feature: domain Description: Acetyltransf_1 Location: 351949-352213 bp Feature: domain Description: Acetyltransf_1 Location: 351949-352 2 13 bp Feature: gene Location: 352598-353785 bp Feature: domain Description: DUF3103 Location: 352718-353777 bp Feature: domain Description: DUF3103 Location: 352 718-353777 bp Feature: gene Location: 651908-654028 bp Feature: domain Description: CarboxypepD_reg Location: 652037-652256 bp Feature: domain Description: CarboxypepD_reg Location: 652 037-652 2 56 bp Feature: domain Description: CarboxypepD_reg Location: 653288-653486 bp Feature: domain Description: CarboxypepD_reg Location: 6532 88-653486 bp Feature: gene Location: 654349-655950 bp Feature: domain Description: GH16_laminarinase_like Location: 654535-655351 bp Feature: domain Description: GH16_laminarinase_like Location: 654535-655351 bp Feature: gene Location: 656541-657854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 656760-657372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 656760-657372 bp Feature: domain Description: GIIM Note: maturase Location: 657426-657630 bp Feature: domain Description: GIIM Note: maturase Location: 65742 6-657630 bp Feature: gene Location: 658167-659471 bp Feature: domain Description: Maltoporin-like Location: 658281-659469 bp Feature: domain Description: Maltoporin-like Location: 6582 81-659469 bp Feature: gene Location: 659635-660312 bp Feature: domain Description: PRK13503 Location: 659656-660301 bp Feature: domain Description: PRK13503 Location: 659656-660301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_PotD_PotF_like (cd13590), RVT-GII, GIIM (pfam08388), Acetyltransf_1 (pfam00583), DUF3103 (pfam11301), CarboxypepD_reg (pfam13620), GH16_laminarinase_like (cd08023), Maltoporin-like (cd01346), PRK13503 (HTH-type transcriptional activator RhaS)

Seq: CP035920.1 Vibrio cidicii strain 2423-01 plasmid unnamed1, complete sequence (90006 bp)
Overview 1 RT 1: 10570-15177 bp Neighborhood of RT #1 [10570, 15224] HsdM HTH_26 RVT-GII SR_ResInv Feature: gene Location: 10570-12990 bp Feature: domain Description: HsdM Location: 10582-11929 bp Feature: domain Description: HsdM Location: 10582-11929 bp Feature: gene Location: 13000-13224 bp Feature: domain Description: HTH_26 Location: 13015-13201 bp Feature: domain Description: HTH_26 Location: 13 015-13 201 bp Feature: gene Location: 13699-13941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13705-13933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 705-13 93 3 bp Feature: gene Location: 14786-14929 bp Feature: gene Location: 15096-15224 bp Feature: domain Description: SR_ResInv Location: 15108-15177 bp Feature: domain Description: SR_ResInv Location: 15108-15177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), HTH_26 (pfam13443), RVT-GII, SR_ResInv (cd03768)