myRT

myRT report for GCA_009676645.1_ASM967664v1

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Seq: CP046040.1 Streptococcus equi subsp. zooepidemicus strain OH-71905 chromosome, complete genome (2189155 bp)
Overview 1 RT 1: 798577-803031 bp 2 RT 2: 1125103-1129721 bp 3 RT 3: 1581894-1592100 bp 4 RT 4: 1599081-1613158 bp Neighborhood of RT #1 [798577, 803031] TnpW T4SS-DNA_transf RVT-GII TraG-D_C Neighborhood of RT #2 [1125103, 1129792] YozG Relaxase RVT-GII Intron_maturas2 Relaxase MobC Neighborhood of RT #3 [1581894, 1592100] KOG1000 RVT-GII Intron_maturas2 HNHc Methyltransf_25 COG4646 Neighborhood of RT #4 [1599081, 1613158] Peptidase_M23 Phage_lysozyme2 TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI VirD4 RVT-GII T4SS-DNA_transf Feature: gene Location: 798577-798762 bp Ori: QGM13633.1 Feature: domain Description: TnpW Location: 798619-798721 bp Feature: domain Description: TnpW Location: 79861 9-798721 bp Feature: gene Location: 798774-799127 bp Feature: domain Description: T4SS-DNA_transf Location: 798789-799071 bp Feature: domain Description: T4SS-DNA_transf Location: 798789-799071 bp Feature: gene Location: 799879-801789 bp Ori: QGM13634.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 800188-800944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8001 88-800944 bp Feature: gene Location: 801812-802402 bp Ori: QGM14810.1 Feature: domain Description: TraG-D_C Location: 801893-802214 bp Feature: domain Description: TraG-D_C Location: 801 893-80221 4 bp Feature: gene Location: 802483-803031 bp Feature: gene Location: 1125103-1125309 bp Ori: QGM13901.1 Feature: domain Description: YozG Location: 1125118-1125304 bp Feature: domain Description: YozG Location: 1 1 251 1 8-1 1 25304 bp Feature: gene Location: 1125468-1126592 bp Ori: QGM13902.1 Feature: domain Description: Relaxase Location: 1125471-1125891 bp Feature: domain Description: Relaxase Location: 1 1 25471 -1 1 25891 bp Feature: gene Location: 1126711-1128513 bp Ori: QGM13903.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1126987-1127791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 26987-1 1 27791 bp Feature: domain Description: Intron_maturas2 Location: 1127899-1128178 bp Feature: domain Description: Intron_maturas2 Location: 1 1 27899-1 1 281 78 bp Feature: gene Location: 1129086-1129412 bp Feature: domain Description: Relaxase Location: 1129116-1129413 bp Feature: domain Description: Relaxase Location: 1 1 291 1 6-1 1 2941 3 bp Feature: gene Location: 1129412-1129792 bp Ori: QGM13904.1 Gene: mobC Feature: domain Description: MobC Location: 1129625-1129721 bp Feature: domain Description: MobC Location: 1 1 29625-1 1 29721 bp Feature: gene Location: 1581894-1582193 bp Feature: gene Location: 1582264-1583637 bp Feature: domain Description: KOG1000 Location: 1582573-1582891 bp Feature: domain Description: KOG1 000 Location: 1 582573-1 582891 bp Feature: gene Location: 1583745-1585523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1584006-1584798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 584006-1 584798 bp Feature: domain Description: Intron_maturas2 Location: 1584903-1585134 bp Feature: domain Description: Intron_maturas2 Location: 1 584903-1 5851 34 bp Feature: domain Description: HNHc Note: nucleases Location: 1585299-1585485 bp Feature: domain Description: HNHc Note: nucleases Location: 1 585299-1 585485 bp Feature: gene Location: 1586033-1591498 bp Feature: domain Description: Methyltransf_25 Location: 1588148-1588367 bp Feature: domain Description: Methyltransf_25 Location: 1 5881 48-1 588367 bp Feature: domain Description: COG4646 Location: 1589225-1591352 bp Feature: domain Description: COG4646 Location: 1 589225-1 591 352 bp Feature: gene Location: 1591549-1592100 bp Feature: gene Location: 1599081-1601883 bp Feature: domain Description: Peptidase_M23 Location: 1600527-1600740 bp Feature: domain Description: Peptidase_M23 Location: 1 600527-1 600740 bp Feature: domain Description: Phage_lysozyme2 Location: 1600884-1601010 bp Feature: domain Description: Phage_lysozyme2 Location: 1 600884-1 601 01 0 bp Feature: gene Location: 1601880-1602848 bp Ori: QGM14289.1 Feature: domain Description: TraC-F-type Location: 1601973-1602669 bp Feature: domain Description: TraC-F-type Location: 1 601 973-1 602669 bp Feature: gene Location: 1602853-1604526 bp Ori: QGM14290.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1602925-1603165 bp Feature: domain Description: RVT_N Location: 1 602925-1 6031 65 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1603213-1603873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 60321 3-1 603873 bp Feature: domain Description: GIIM Note: maturase Location: 1603942-1604161 bp Feature: domain Description: GIIM Note: maturase Location: 1 603942-1 6041 61 bp Feature: gene Location: 1605055-1606542 bp Ori: QGM14291.1 Feature: domain Description: TraC-F-type Location: 1605373-1606225 bp Feature: domain Description: TraC-F-type Location: 1 605373-1 606225 bp Feature: gene Location: 1606499-1606852 bp Ori: QGM14292.1 Feature: domain Description: PrgI Location: 1606511-1606769 bp Feature: domain Description: PrgI Location: 1 60651 1 -1 606769 bp Feature: gene Location: 1607785-1608027 bp Feature: gene Location: 1608045-1608668 bp Ori: QGM14295.1 Feature: domain Description: VirD4 Location: 1608123-1608564 bp Feature: domain Description: VirD4 Location: 1 6081 23-1 608564 bp Feature: gene Location: 1608691-1610601 bp Ori: QGM14296.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1609000-1609756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 609000-1 609756 bp Feature: gene Location: 1611410-1612684 bp Feature: domain Description: T4SS-DNA_transf Location: 1611797-1612685 bp Feature: domain Description: T4SS-DNA_transf Location: 1 61 1 797-1 61 2685 bp Feature: gene Location: 1612684-1613158 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpW (pfam14202), T4SS-DNA_transf (pfam02534), RVT-GII, TraG-D_C (pfam12696), YozG (COG3655), Relaxase (pfam03432), Intron_maturas2 (pfam01348), MobC (pfam05713), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), HNHc (smart00507)
Methyltransf_25 (pfam13649), COG4646 (Adenine-specific DNA methylase, N12 class ), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), TraC-F-type (TIGR02746), RVT_N (pfam13655), GIIM (pfam08388), PrgI (pfam12666), VirD4 (COG3505)