myRT

myRT report for GCA_009676765.1_ASM967676v1

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Seq: CP046061.1 Pseudomonas aeruginosa strain 1811-13R031 chromosome, complete genome (7344079 bp)
Overview 1 RT 1: 618349-628655 bp 2 RT 2: 644913-653751 bp 3 RT 3: 1232555-1236934 bp 4 RT 4: 3049898-3060453 bp Neighborhood of RT #1 [618349, 628657] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [644913, 653780] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #3 [1232555, 1236934] ABC_phnC DUF772 RVT-GII GIIM Neighborhood of RT #4 [3049898, 3060453] DUF3275 RVT_N RVT-GII GIIM HNHc DUF3275 DUF3577 DUF3577 DUF3085 RVT-GII GIIM Feature: gene Location: 618349-619470 bp Feature: domain Description: COG3177 Location: 618367-619459 bp Feature: domain Description: COG31 77 Location: 61 8367-61 9459 bp Feature: gene Location: 619729-619866 bp Feature: gene Location: 620194-621879 bp Feature: domain Description: RVT_N Location: 620251-620491 bp Feature: domain Description: RVT_N Location: 620251 -620491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620539-621175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620539-621 1 75 bp Feature: domain Description: GIIM Note: maturase Location: 621229-621460 bp Feature: domain Description: GIIM Note: maturase Location: 621 229-621 460 bp Feature: domain Description: HNH Note: nucleases Location: 621712-621850 bp Feature: domain Description: HNH Note: nucleases Location: 621 71 2-621 850 bp Feature: gene Location: 622960-626697 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 623068-623725 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 623068-623725 bp Feature: domain Description: PRK09776 Location: 623938-624409 bp Feature: domain Description: PRK09776 Location: 623938-624409 bp Feature: domain Description: PAS Location: 624499-624991 bp Feature: domain Description: PAS Location: 624499-624991 bp Feature: domain Description: PRK10060 Location: 625000-626647 bp Feature: domain Description: PRK1 0060 Location: 625000-626647 bp Feature: gene Location: 626804-628657 bp Feature: domain Description: PRK05658 Location: 626816-628655 bp Feature: domain Description: PRK05658 Location: 62681 6-628655 bp Feature: gene Location: 644913-646127 bp Feature: domain Description: PRK10770 Location: 644925-646119 bp Feature: domain Description: PRK1 0770 Location: 644925-6461 1 9 bp Feature: gene Location: 646186-648975 bp Feature: domain Description: LptD Location: 646381-648961 bp Feature: domain Description: LptD Location: 646381 -648961 bp Feature: gene Location: 649108-650820 bp Feature: domain Description: RVT_N Location: 649165-649408 bp Feature: domain Description: RVT_N Location: 6491 65-649408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649453-650089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649453-650089 bp Feature: domain Description: YkfC Location: 650296-650449 bp Feature: domain Description: YkfC Location: 650296-650449 bp Feature: domain Description: HNH Note: nucleases Location: 650626-650764 bp Feature: domain Description: HNH Note: nucleases Location: 650626-650764 bp Feature: gene Location: 652093-653109 bp Feature: domain Description: COG3178 Location: 652096-653095 bp Feature: domain Description: COG31 78 Location: 652096-653095 bp Feature: gene Location: 653106-653780 bp Feature: domain Description: NTP_transferase_like_1 Location: 653112-653751 bp Feature: domain Description: NTP_transferase_like_1 Location: 6531 1 2-653751 bp Feature: gene Location: 1232555-1233382 bp Feature: domain Description: ABC_phnC Location: 1232585-1233299 bp Feature: domain Description: ABC_phnC Location: 1 232585-1 233299 bp Feature: gene Location: 1233725-1234366 bp Feature: domain Description: DUF772 Location: 1233875-1234070 bp Feature: domain Description: DUF772 Location: 1 233875-1 234070 bp Feature: gene Location: 1234755-1236023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1234968-1235625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 234968-1 235625 bp Feature: domain Description: GIIM Note: maturase Location: 1235703-1235925 bp Feature: domain Description: GIIM Note: maturase Location: 1 235703-1 235925 bp Feature: gene Location: 1236173-1236571 bp Feature: gene Location: 1236755-1236934 bp Feature: gene Location: 3049898-3050320 bp Feature: gene Location: 3050317-3050739 bp Feature: domain Description: DUF3275 Location: 3050320-3050716 bp Feature: domain Description: DUF3275 Location: 3050320-305071 6 bp Feature: gene Location: 3050891-3052609 bp Feature: domain Description: RVT_N Location: 3050948-3051191 bp Feature: domain Description: RVT_N Location: 3050948-3051 1 91 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3051236-3051887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3051 236-3051 887 bp Feature: domain Description: GIIM Note: maturase Location: 3051941-3052172 bp Feature: domain Description: GIIM Note: maturase Location: 3051 941 -30521 72 bp Feature: domain Description: HNHc Note: nucleases Location: 3052406-3052562 bp Feature: domain Description: HNHc Note: nucleases Location: 3052406-3052562 bp Feature: gene Location: 3053205-3053423 bp Feature: domain Description: DUF3275 Location: 3053247-3053403 bp Feature: domain Description: DUF3275 Location: 3053247-3053403 bp Feature: gene Location: 3053480-3054397 bp Feature: domain Description: DUF3577 Location: 3053495-3053840 bp Feature: domain Description: DUF3577 Location: 3053495-3053840 bp Feature: domain Description: DUF3577 Location: 3053873-3054251 bp Feature: domain Description: DUF3577 Location: 3053873-3054251 bp Feature: gene Location: 3055734-3056033 bp Feature: domain Description: DUF3085 Location: 3055800-3055920 bp Feature: domain Description: DUF3085 Location: 3055800-3055920 bp Feature: gene Location: 3056126-3057151 bp Feature: gene Location: 3057473-3058879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3057812-3058427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305781 2-3058427 bp Feature: domain Description: GIIM Note: maturase Location: 3058487-3058700 bp Feature: domain Description: GIIM Note: maturase Location: 3058487-3058700 bp Feature: gene Location: 3059340-3059618 bp Feature: gene Location: 3059716-3060453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), ABC_phnC (TIGR02315), DUF772 (pfam05598), DUF3275 (pfam11679), HNHc (smart00507), DUF3577 (pfam12101)
DUF3085 (pfam11284)