myRT

myRT report for GCA_009676885.1_ASM967688v1

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Seq: CP046069.1 Pseudomonas aeruginosa strain KRP1 chromosome, complete genome (6737396 bp)
Overview 1 RT 1: 624308-635042 bp 2 RT 2: 651301-659477 bp 3 RT 3: 1077960-1084770 bp Neighborhood of RT #1 [624308, 635044] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [651301, 659491] PRK10770 LptD RVT-GII YkfC HNH COG3178 Neighborhood of RT #3 [1077960, 1084967] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 624308-624643 bp Ori: QGM38621.1 Feature: domain Description: NERD Location: 624407-624578 bp Feature: domain Description: NERD Location: 624407-624578 bp Feature: gene Location: 624736-625857 bp Ori: QGM38622.1 Feature: domain Description: COG3177 Location: 624754-625846 bp Feature: domain Description: COG31 77 Location: 624754-625846 bp Feature: gene Location: 626581-628266 bp Ori: QGM38623.1 Gene: ltrA1 Feature: domain Description: RVT_N Location: 626638-626878 bp Feature: domain Description: RVT_N Location: 626638-626878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 626926-627562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 626926-627562 bp Feature: domain Description: GIIM Note: maturase Location: 627616-627847 bp Feature: domain Description: GIIM Note: maturase Location: 62761 6-627847 bp Feature: domain Description: HNH Note: nucleases Location: 628099-628237 bp Feature: domain Description: HNH Note: nucleases Location: 628099-628237 bp Feature: gene Location: 629347-633084 bp Ori: QGM38624.1 Gene: gmr2 Feature: domain Description: PBP2_BvgS_HisK_like Location: 629455-630112 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 629455-6301 1 2 bp Feature: domain Description: PRK09776 Location: 630325-630796 bp Feature: domain Description: PRK09776 Location: 630325-630796 bp Feature: domain Description: PAS Location: 630853-631378 bp Feature: domain Description: PAS Location: 630853-631 378 bp Feature: domain Description: PRK10060 Location: 631387-633034 bp Feature: domain Description: PRK1 0060 Location: 631 387-633034 bp Feature: gene Location: 633191-635044 bp Ori: QGM38625.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 633203-635042 bp Feature: domain Description: PRK05658 Location: 633203-635042 bp Feature: gene Location: 651301-652593 bp Ori: QGM38643.1 Gene: surA1 Feature: domain Description: PRK10770 Location: 651391-652585 bp Feature: domain Description: PRK1 0770 Location: 651 391 -652585 bp Feature: gene Location: 652574-655357 bp Ori: QGM38644.1 Gene: lptD Feature: domain Description: LptD Location: 652769-655343 bp Feature: domain Description: LptD Location: 652769-655343 bp Feature: gene Location: 655490-656800 bp Ori: QGM38645.1 Gene: ltrA2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 655493-656069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 655493-656069 bp Feature: domain Description: YkfC Location: 656276-656429 bp Feature: domain Description: YkfC Location: 656276-656429 bp Feature: domain Description: HNH Note: nucleases Location: 656606-656744 bp Feature: domain Description: HNH Note: nucleases Location: 656606-656744 bp Feature: gene Location: 658044-658178 bp Feature: gene Location: 658475-659491 bp Ori: QGM38647.1 Feature: domain Description: COG3178 Location: 658478-659477 bp Feature: domain Description: COG31 78 Location: 658478-659477 bp Feature: gene Location: 1077960-1078787 bp Ori: QGM39040.1 Gene: glnQ2 Feature: domain Description: ABC_phnC Location: 1077990-1078704 bp Feature: domain Description: ABC_phnC Location: 1 077990-1 078704 bp Feature: gene Location: 1079130-1079771 bp Ori: QGM39041.1 Feature: domain Description: DUF772 Location: 1079280-1079475 bp Feature: domain Description: DUF772 Location: 1 079280-1 079475 bp Feature: gene Location: 1080160-1081428 bp Ori: QGM39042.1 Gene: ltrA3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1080373-1081030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 080373-1 081 030 bp Feature: domain Description: GIIM Note: maturase Location: 1081108-1081330 bp Feature: domain Description: GIIM Note: maturase Location: 1 081 1 08-1 081 330 bp Feature: gene Location: 1082160-1082339 bp Feature: gene Location: 1083423-1084967 bp Ori: QGM39044.1 Feature: domain Description: CHD Location: 1083639-1084053 bp Feature: domain Description: CHD Location: 1 083639-1 084053 bp Feature: domain Description: CHD Location: 1084281-1084770 bp Feature: domain Description: CHD Location: 1 084281 -1 084770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), ABC_phnC (TIGR02315), DUF772 (pfam05598), CHD (cd07302)