myRT

myRT report for GCA_009684575.1_ASM968457v1

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Seq: CP034417.1 Klebsiella pneumoniae strain C789 plasmid pKPC-CR-hvKP-C789, complete sequence (128299 bp)
Overview 1 RT 1: 25767-29988 bp 2 RT 2: 93875-97957 bp Neighborhood of RT #1 [25767, 29988] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [93875, 98094] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 25767-26189 bp Ori: QGM61369.1 Feature: domain Description: DUF1380 Location: 25770-26064 bp Feature: domain Description: DUF1 380 Location: 25770-26064 bp Feature: gene Location: 26186-26377 bp Feature: gene Location: 26691-28358 bp Ori: QGM61371.1 Gene: ltrA Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: HNHc Note: nucleases Location: 28164-28323 bp Feature: domain Description: HNHc Note: nucleases Location: 281 64-28323 bp Feature: gene Location: 29238-29495 bp Feature: gene Location: 29758-29988 bp Feature: gene Location: 93875-94306 bp Ori: QGM61441.1 Feature: domain Description: PRK10276 Location: 93926-94289 bp Feature: domain Description: PRK1 0276 Location: 93926-94289 bp Feature: gene Location: 94465-94716 bp Feature: gene Location: 94716-96200 bp Ori: QGM61499.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95118-95808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 1 8-95808 bp Feature: gene Location: 96449-97420 bp Ori: QGM61443.1 Feature: domain Description: StbA Location: 96452-97397 bp Feature: domain Description: StbA Location: 96452-97397 bp Feature: gene Location: 97423-98094 bp Ori: QGM61444.1 Feature: domain Description: Plasmid_stab_B Location: 97438-97645 bp Feature: domain Description: Plasmid_stab_B Location: 97438-97645 bp Feature: domain Description: Plasmid_stab_B Location: 97750-97957 bp Feature: domain Description: Plasmid_stab_B Location: 97750-97957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP034415.1 Klebsiella pneumoniae strain C789 chromosome, complete genome (5474803 bp)
Overview 1 RT 1: 1215015-1219900 bp 2 RT 2: 1380363-1383139 bp 3 RT 3: 1840731-1845603 bp 4 RT 4: 1861344-1867606 bp 5 RT 5: 3115020-3119158 bp 6 RT 6: 3266311-3270410 bp 7 RT 7: 3339143-3343405 bp 8 RT 8: 3360312-3364219 bp 9 RT 9: 3708798-3713636 bp Neighborhood of RT #1 [1215015, 1219905] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1380363, 1383139] RVT-GII Neighborhood of RT #3 [1840731, 1845617] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1861344, 1867606] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3115020, 3119158] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3266311, 3270421] umuC PRK10276 RVT-GII DinI Neighborhood of RT #7 [3339143, 3343443] PRK10597 RVT-GII PRK05318 Neighborhood of RT #8 [3360312, 3364230] umuC PRK10276 RVT-GII DinI Neighborhood of RT #9 [3708798, 3713686] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1215015-1217399 bp Ori: QGM57018.1 Feature: domain Description: Phage_GPA Location: 1215579-1216545 bp Feature: domain Description: Phage_GPA Location: 12 15579-12 16545 bp Feature: gene Location: 1217629-1217880 bp Feature: gene Location: 1217880-1219364 bp Ori: QGM60938.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1218282-1218972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 182 82 -12 18972 bp Feature: gene Location: 1219472-1219660 bp Feature: gene Location: 1219672-1219905 bp Ori: QGM57021.1 Feature: domain Description: DinI Location: 1219717-1219900 bp Feature: domain Description: DinI Location: 12 19717-12 19900 bp Feature: gene Location: 1380363-1380566 bp Feature: gene Location: 1380559-1380897 bp Feature: gene Location: 1380994-1382478 bp Ori: QGM60945.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1381396-1382086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1381396-1382 086 bp Feature: gene Location: 1382478-1382729 bp Feature: gene Location: 1382882-1383139 bp Feature: gene Location: 1840731-1841900 bp Ori: QGM57568.1 Gene: dacD Feature: domain Description: dacD Location: 1840740-1841895 bp Feature: domain Description: dacD Location: 1840740-1841895 bp Feature: gene Location: 1842170-1842421 bp Feature: gene Location: 1842421-1843905 bp Ori: QGM60966.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1842823-1843513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1842 82 3-1843513 bp Feature: gene Location: 1843987-1844460 bp Ori: QGM57570.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1843990-1844449 bp Feature: domain Description: PRK10016 Location: 1843990-1844449 bp Feature: gene Location: 1844559-1845617 bp Ori: QGM57571.1 Feature: domain Description: YccC Location: 1844565-1845603 bp Feature: domain Description: YccC Location: 1844565-1845603 bp Feature: gene Location: 1861344-1862447 bp Ori: QGM57590.1 Feature: domain Description: STKc_PknB_like Location: 1861476-1861917 bp Feature: domain Description: STKc_PknB_like Location: 1861476-1861917 bp Feature: gene Location: 1862517-1862759 bp Feature: gene Location: 1863006-1864106 bp Ori: QGM57591.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1863189-1863717 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1863189-1863717 bp Feature: gene Location: 1864221-1866467 bp Ori: QGM57592.1 Feature: domain Description: AAA_15 Location: 1864224-1865232 bp Feature: domain Description: AAA_15 Location: 18642 2 4-18652 32 bp Feature: gene Location: 1867376-1867606 bp Feature: gene Location: 3115020-3116285 bp Ori: QGM58751.1 Gene: umuC Feature: domain Description: umuC Location: 3115023-3116283 bp Feature: domain Description: umuC Location: 311502 3-31162 83 bp Feature: gene Location: 3116287-3116706 bp Ori: QGM58752.1 Feature: domain Description: PRK10276 Location: 3116290-3116701 bp Feature: domain Description: PRK102 76 Location: 31162 90-3116701 bp Feature: gene Location: 3116786-3118270 bp Ori: QGM61036.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3117188-3117878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3117188-3117878 bp Feature: gene Location: 3118270-3118521 bp Feature: gene Location: 3119069-3119158 bp Feature: gene Location: 3266311-3267576 bp Ori: QGM58901.1 Gene: umuC Feature: domain Description: umuC Location: 3266314-3267574 bp Feature: domain Description: umuC Location: 32 66314-32 67574 bp Feature: gene Location: 3267579-3267998 bp Ori: QGM58902.1 Feature: domain Description: PRK10276 Location: 3267582-3267993 bp Feature: domain Description: PRK102 76 Location: 32 67582 -32 67993 bp Feature: gene Location: 3268077-3269561 bp Ori: QGM61043.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3268479-3269169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 68479-32 69169 bp Feature: gene Location: 3269561-3269812 bp Feature: gene Location: 3270179-3270421 bp Ori: QGM58904.1 Feature: domain Description: DinI Location: 3270230-3270410 bp Feature: domain Description: DinI Location: 32 702 30-32 70410 bp Feature: gene Location: 3339143-3339433 bp Feature: gene Location: 3339445-3339678 bp Ori: QGM58975.1 Feature: domain Description: PRK10597 Location: 3339448-3339673 bp Feature: domain Description: PRK10597 Location: 3339448-3339673 bp Feature: gene Location: 3339757-3341241 bp Ori: QGM61048.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3340159-3340849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3340159-3340849 bp Feature: gene Location: 3341241-3341492 bp Feature: gene Location: 3342082-3343443 bp Ori: QGM58977.1 Feature: domain Description: PRK05318 Location: 3342106-3343405 bp Feature: domain Description: PRK05318 Location: 3342 106-3343405 bp Feature: gene Location: 3360312-3361577 bp Ori: QGM58995.1 Gene: umuC Feature: domain Description: umuC Location: 3360315-3361572 bp Feature: domain Description: umuC Location: 3360315-3361572 bp Feature: gene Location: 3361580-3361999 bp Ori: QGM58996.1 Feature: domain Description: PRK10276 Location: 3361583-3361994 bp Feature: domain Description: PRK102 76 Location: 3361583-3361994 bp Feature: gene Location: 3362103-3363587 bp Ori: QGM61052.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3362505-3363195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3362 505-3363195 bp Feature: gene Location: 3363587-3363838 bp Feature: gene Location: 3363988-3364230 bp Ori: QGM58998.1 Feature: domain Description: DinI Location: 3364036-3364219 bp Feature: domain Description: DinI Location: 3364036-33642 19 bp Feature: gene Location: 3708798-3709676 bp Ori: QGM61071.1 Feature: domain Description: Phage_CI_repr Location: 3708825-3709008 bp Feature: domain Description: Phage_CI_repr Location: 370882 5-3709008 bp Feature: domain Description: Phage_CI_repr Location: 3709137-3709329 bp Feature: domain Description: Phage_CI_repr Location: 3709137-370932 9 bp Feature: domain Description: Phage_CI_C Location: 3709356-3709650 bp Feature: domain Description: Phage_CI_C Location: 3709356-3709650 bp Feature: gene Location: 3709688-3710632 bp Feature: gene Location: 3710731-3712215 bp Ori: QGM61072.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3711133-3711823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3711133-371182 3 bp Feature: gene Location: 3712215-3712466 bp Feature: gene Location: 3712634-3713686 bp Ori: QGM59326.1 Feature: domain Description: int Location: 3712637-3713636 bp Feature: domain Description: int Location: 3712 637-3713636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)