myRT

myRT report for GCA_009688945.1_ASM968894v1

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Seq: AP021874.1 Desulfosarcina alkanivorans PL12 DNA, complete genome (7324708 bp)
Overview 1 RT 1: 23312-29941 bp 2 RT 2: 605434-607815 bp 3 RT 3: 674763-681333 bp 4 RT 4: 912194-917297 bp 5 RT 5: 2111994-2119464 bp 6 RT 6: 2401136-2405079 bp 7 RT 7: 3466741-3471705 bp 8 RT 8: 3901345-3907129 bp 9 RT 9: 4306668-4311420 bp 10 RT 10: 5273854-5278313 bp 11 RT 11: 5740028-5745258 bp 12 RT 12: 6645727-6651795 bp Neighborhood of RT #1 [23312, 29943] EcfA2 EcfT RVT-GII GIIM trkA PRK10750 Neighborhood of RT #2 [605434, 608708] RelE PhdYeFM_antitox RVT-GII GIIM COG4916 Neighborhood of RT #3 [674763, 681338] CBS CBS Hexapep_loop LbetaH LbH_gamma_CA RVT-GII GIIM PRK12387 HycG Complex1_30kDa HycE2 Neighborhood of RT #4 [912194, 917297] HTH_29 rve RVT-GII GIIM AcrR Neighborhood of RT #5 [2111994, 2119487] OsmC QdoI RVT-GII YafD RVT-GII Nitroreductase_1 Neighborhood of RT #6 [2401136, 2405079] Unstab_antitox RVT-GII Neighborhood of RT #7 [3466741, 3471812] TIGR04551 RVT-GII GIIM HDGYP Neighborhood of RT #8 [3901345, 3907176] PRK15062 RVT-GII GIIM HypF HupF_HypC Neighborhood of RT #9 [4306668, 4311428] DUF45 SlyX SlyX RVT-GII GIIM LPLAT_AGPAT-like LCB5 Neighborhood of RT #10 [5273854, 5278315] yhbS yhbS RVT-GII GIIM LemA YgcG Neighborhood of RT #11 [5740028, 5745302] TroA_e TadA RVT-GII GIIM cytochr_II_ccsB cytochr_II_ccsB Neighborhood of RT #12 [6645727, 6651818] PRK09369 RVT-GII GIIM thiS ThiG Feature: gene Location: 23312-24061 bp Ori: BBO66094.1 Feature: domain Description: EcfA2 Location: 23324-23984 bp Feature: domain Description: EcfA2 Location: 23324-23984 bp Feature: gene Location: 24049-24789 bp Ori: BBO66095.1 Feature: domain Description: EcfT Location: 24076-24781 bp Feature: domain Description: EcfT Location: 24076-24781 bp Feature: gene Location: 25708-26928 bp Ori: BBO66096.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25948-26572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25948-26572 bp Feature: domain Description: GIIM Note: maturase Location: 26617-26833 bp Feature: domain Description: GIIM Note: maturase Location: 2661 7-26833 bp Feature: gene Location: 27130-28494 bp Ori: BBO66097.1 Gene: trkA Feature: domain Description: trkA Location: 27136-28477 bp Feature: domain Description: trkA Location: 271 36-28477 bp Feature: gene Location: 28495-29943 bp Ori: BBO66098.1 Feature: domain Description: PRK10750 Location: 28498-29941 bp Feature: domain Description: PRK1 0750 Location: 28498-29941 bp Feature: gene Location: 605434-605700 bp Ori: BBO66631.1 Feature: domain Description: RelE Location: 605446-605692 bp Feature: domain Description: RelE Location: 605446-605692 bp Feature: gene Location: 605697-605948 bp Ori: BBO66632.1 Feature: domain Description: PhdYeFM_antitox Location: 605712-605859 bp Feature: domain Description: PhdYeFM_antitox Location: 60571 2-605859 bp Feature: gene Location: 606011-606841 bp Ori: BBO66633.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 606029-606467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 606029-606467 bp Feature: domain Description: GIIM Note: maturase Location: 606542-606758 bp Feature: domain Description: GIIM Note: maturase Location: 606542-606758 bp Feature: gene Location: 606961-607308 bp Feature: gene Location: 607425-608708 bp Ori: BBO66635.1 Feature: domain Description: COG4916 Location: 607437-607815 bp Feature: domain Description: COG491 6 Location: 607437-60781 5 bp Feature: gene Location: 674763-675341 bp Ori: BBO66694.1 Feature: domain Description: CBS Location: 674781-674973 bp Feature: domain Description: CBS Location: 674781 -674973 bp Feature: domain Description: CBS Location: 675126-675288 bp Feature: domain Description: CBS Location: 6751 26-675288 bp Feature: gene Location: 675338-676759 bp Ori: BBO66695.1 Feature: domain Description: Hexapep_loop Location: 675791-675860 bp Feature: domain Description: Hexapep_loop Location: 675791 -675860 bp Feature: domain Description: LbetaH Location: 676091-676196 bp Feature: domain Description: LbetaH Location: 676091 -6761 96 bp Feature: domain Description: LbH_gamma_CA Location: 676286-676493 bp Feature: domain Description: LbH_gamma_CA Location: 676286-676493 bp Feature: gene Location: 677465-678715 bp Ori: BBO66696.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677735-678359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677735-678359 bp Feature: domain Description: GIIM Note: maturase Location: 678404-678620 bp Feature: domain Description: GIIM Note: maturase Location: 678404-678620 bp Feature: gene Location: 679032-679775 bp Ori: BBO66697.1 Gene: ehrS Feature: domain Description: PRK12387 Location: 679035-679344 bp Feature: domain Description: PRK1 2387 Location: 679035-679344 bp Feature: domain Description: HycG Location: 679383-679764 bp Feature: domain Description: HycG Location: 679383-679764 bp Feature: gene Location: 679827-681338 bp Ori: BBO66698.1 Gene: ehrL Feature: domain Description: Complex1_30kDa Location: 680034-680154 bp Feature: domain Description: Complex1 _30kDa Location: 680034-6801 54 bp Feature: domain Description: HycE2 Location: 680256-681333 bp Feature: domain Description: HycE2 Location: 680256-681 333 bp Feature: gene Location: 912194-913468 bp Ori: BBO66900.1 Feature: domain Description: HTH_29 Location: 912344-912473 bp Feature: domain Description: HTH_29 Location: 91 2344-91 2473 bp Feature: domain Description: rve Location: 912671-913007 bp Feature: domain Description: rve Location: 91 2671 -91 3007 bp Feature: gene Location: 913574-913795 bp Feature: gene Location: 914236-915486 bp Ori: BBO66902.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914506-915130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 4506-91 51 30 bp Feature: domain Description: GIIM Note: maturase Location: 915175-915391 bp Feature: domain Description: GIIM Note: maturase Location: 91 51 75-91 5391 bp Feature: gene Location: 916516-916701 bp Ori: BBO66903.1 Feature: domain Description: AcrR Location: 916525-916669 bp Feature: domain Description: AcrR Location: 91 6525-91 6669 bp Feature: gene Location: 916776-917297 bp Feature: gene Location: 2111994-2112506 bp Ori: BBO67967.1 Feature: domain Description: OsmC Location: 2112174-2112480 bp Feature: domain Description: OsmC Location: 21 1 21 74-21 1 2480 bp Feature: gene Location: 2112899-2113243 bp Ori: BBO67968.1 Feature: domain Description: QdoI Location: 2112974-2113220 bp Feature: domain Description: QdoI Location: 21 1 2974-21 1 3220 bp Feature: gene Location: 2113946-2115223 bp Ori: BBO67969.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2114276-2114894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 4276-21 1 4894 bp Feature: gene Location: 2116240-2116971 bp Ori: BBO67970.1 Feature: domain Description: YafD Location: 2116246-2116846 bp Feature: domain Description: YafD Location: 21 1 6246-21 1 6846 bp Feature: gene Location: 2117215-2117955 bp Ori: BBO67971.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2117218-2117626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 721 8-21 1 7626 bp Feature: gene Location: 2117920-2118204 bp Feature: gene Location: 2118882-2119487 bp Ori: BBO67973.1 Feature: domain Description: Nitroreductase_1 Location: 2118897-2119464 bp Feature: domain Description: Nitroreductase_1 Location: 21 1 8897-21 1 9464 bp Feature: gene Location: 2401136-2401342 bp Ori: BBO68230.1 Feature: domain Description: Unstab_antitox Location: 2401160-2401319 bp Feature: domain Description: Unstab_antitox Location: 2401 1 60-2401 31 9 bp Feature: gene Location: 2401339-2401647 bp Feature: gene Location: 2401991-2402797 bp Ori: BBO68232.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2402354-2402738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2402354-2402738 bp Feature: gene Location: 2403495-2403776 bp Feature: gene Location: 2404234-2405079 bp Feature: gene Location: 3466741-3468351 bp Ori: BBO69185.1 Feature: domain Description: TIGR04551 Location: 3466873-3467281 bp Feature: domain Description: TIGR04551 Location: 3466873-3467281 bp Feature: gene Location: 3468348-3468581 bp Feature: gene Location: 3468710-3469960 bp Ori: BBO69187.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3468980-3469604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3468980-3469604 bp Feature: domain Description: GIIM Note: maturase Location: 3469649-3469865 bp Feature: domain Description: GIIM Note: maturase Location: 3469649-3469865 bp Feature: gene Location: 3470605-3470874 bp Feature: gene Location: 3470913-3471812 bp Ori: BBO69189.1 Feature: domain Description: HDGYP Location: 3471171-3471705 bp Feature: domain Description: HDGYP Location: 3471 1 71 -3471 705 bp Feature: gene Location: 3901345-3902436 bp Ori: BBO69557.1 Gene: hypD Feature: domain Description: PRK15062 Location: 3901363-3902428 bp Feature: domain Description: PRK1 5062 Location: 3901 363-3902428 bp Feature: gene Location: 3902417-3902563 bp Feature: gene Location: 3902585-3903805 bp Ori: BBO69559.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3902825-3903449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3902825-3903449 bp Feature: domain Description: GIIM Note: maturase Location: 3903494-3903710 bp Feature: domain Description: GIIM Note: maturase Location: 3903494-390371 0 bp Feature: gene Location: 3904630-3906918 bp Ori: BBO69560.1 Gene: hypF Feature: domain Description: HypF Location: 3904657-3906907 bp Feature: domain Description: HypF Location: 3904657-3906907 bp Feature: gene Location: 3906934-3907176 bp Ori: BBO69561.1 Gene: hypC Feature: domain Description: HupF_HypC Location: 3906937-3907129 bp Feature: domain Description: HupF_HypC Location: 3906937-39071 29 bp Feature: gene Location: 4306668-4306931 bp Ori: BBO69897.1 Feature: domain Description: DUF45 Location: 4306671-4306908 bp Feature: domain Description: DUF45 Location: 4306671 -4306908 bp Feature: gene Location: 4307164-4307817 bp Ori: BBO69898.1 Feature: domain Description: SlyX Location: 4307440-4307536 bp Feature: domain Description: SlyX Location: 4307440-4307536 bp Feature: domain Description: SlyX Location: 4307629-4307773 bp Feature: domain Description: SlyX Location: 4307629-4307773 bp Feature: gene Location: 4307967-4309217 bp Ori: BBO69899.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4308237-4308861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4308237-4308861 bp Feature: domain Description: GIIM Note: maturase Location: 4308906-4309122 bp Feature: domain Description: GIIM Note: maturase Location: 4308906-43091 22 bp Feature: gene Location: 4309837-4310523 bp Ori: BBO69900.1 Feature: domain Description: LPLAT_AGPAT-like Location: 4309939-4310491 bp Feature: domain Description: LPLAT_AGPAT-like Location: 4309939-431 0491 bp Feature: gene Location: 4310541-4311428 bp Ori: BBO69901.1 Feature: domain Description: LCB5 Location: 4310547-4311420 bp Feature: domain Description: LCB5 Location: 431 0547-431 1 420 bp Feature: gene Location: 5273854-5274081 bp Ori: BBO70775.1 Feature: domain Description: yhbS Location: 5273860-5274070 bp Feature: domain Description: yhbS Location: 5273860-5274070 bp Feature: gene Location: 5274163-5274378 bp Ori: BBO70776.1 Feature: domain Description: yhbS Location: 5274166-5274352 bp Feature: domain Description: yhbS Location: 52741 66-5274352 bp Feature: gene Location: 5275237-5276487 bp Ori: BBO70777.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5275507-5276131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5275507-52761 31 bp Feature: domain Description: GIIM Note: maturase Location: 5276176-5276392 bp Feature: domain Description: GIIM Note: maturase Location: 52761 76-5276392 bp Feature: gene Location: 5276815-5277405 bp Ori: BBO70778.1 Feature: domain Description: LemA Location: 5276836-5277394 bp Feature: domain Description: LemA Location: 5276836-5277394 bp Feature: gene Location: 5277416-5278315 bp Ori: BBO70779.1 Feature: domain Description: YgcG Location: 5277446-5278313 bp Feature: domain Description: YgcG Location: 5277446-527831 3 bp Feature: gene Location: 5740028-5741044 bp Ori: BBO71158.1 Feature: domain Description: TroA_e Location: 5740103-5740970 bp Feature: domain Description: TroA_e Location: 57401 03-5740970 bp Feature: gene Location: 5741041-5741829 bp Ori: BBO71159.1 Feature: domain Description: TadA Location: 5741338-5741752 bp Feature: domain Description: TadA Location: 5741 338-5741 752 bp Feature: gene Location: 5742318-5743568 bp Ori: BBO71160.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5742588-5743212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5742588-574321 2 bp Feature: domain Description: GIIM Note: maturase Location: 5743257-5743473 bp Feature: domain Description: GIIM Note: maturase Location: 5743257-5743473 bp Feature: gene Location: 5743681-5744559 bp Feature: gene Location: 5744556-5745302 bp Ori: BBO71162.1 Feature: domain Description: cytochr_II_ccsB Location: 5744667-5744913 bp Feature: domain Description: cytochr_II_ccsB Location: 5744667-574491 3 bp Feature: domain Description: cytochr_II_ccsB Location: 5745033-5745258 bp Feature: domain Description: cytochr_II_ccsB Location: 5745033-5745258 bp Feature: gene Location: 6645727-6646554 bp Feature: gene Location: 6647308-6648579 bp Ori: BBO71967.1 Gene: murA Feature: domain Description: PRK09369 Location: 6647326-6648574 bp Feature: domain Description: PRK09369 Location: 6647326-6648574 bp Feature: gene Location: 6649266-6650681 bp Ori: BBO71968.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6649629-6650244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6649629-6650244 bp Feature: domain Description: GIIM Note: maturase Location: 6650289-6650496 bp Feature: domain Description: GIIM Note: maturase Location: 6650289-6650496 bp Feature: gene Location: 6650708-6651013 bp Ori: BBO71969.1 Feature: domain Description: thiS Location: 6650822-6651011 bp Feature: domain Description: thiS Location: 6650822-6651 01 1 bp Feature: gene Location: 6651018-6651818 bp Ori: BBO71970.1 Gene: thiG Feature: domain Description: ThiG Location: 6651036-6651795 bp Feature: domain Description: ThiG Location: 6651 036-6651 795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EcfA2 (COG1122), EcfT (COG0619), RVT-GII, GIIM (pfam08388), trkA (PRK09496), PRK10750 (Trk system potassium transporter TrkH), RelE (pfam06296), PhdYeFM_antitox (pfam02604), COG4916 (Uncharacterized protein ), CBS (smart00116)
Hexapep_loop (pfam18776), LbetaH (cl00160), LbH_gamma_CA (cd00710), PRK12387 (formate hydrogenlyase complex iron-sulfur subunit; Provisional), HycG (COG3260), Complex1_30kDa (pfam00329), HycE2 (COG3261), HTH_29 (pfam13551), rve (pfam00665), AcrR (COG1309)
OsmC (pfam02566), QdoI (COG1917), YafD (COG3021), Nitroreductase_1, Unstab_antitox (pfam09720), TIGR04551 (TIGR04551 family protein), HDGYP (COG2206), PRK15062 (hydrogenase isoenzymes formation protein HypD; Provisional), HypF (COG0068), HupF_HypC (pfam01455)
DUF45 (pfam01863), SlyX (pfam04102), LPLAT_AGPAT-like (cd07989), LCB5 (COG1597), yhbS (COG3153), LemA (pfam04011), YgcG (COG1512), TroA_e (cd01142), TadA (COG0590), cytochr_II_ccsB (TIGR03144)
PRK09369 (UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated), thiS (TIGR01683), ThiG (pfam05690)