myRT

myRT report for GCA_009697285.1_ASM969728v1

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Seq: CP046076.1 Enterococcus faecium strain VRE plasmid p5_03A17012, complete sequence (240928 bp)
Overview 1 RT 1: 20876-27485 bp 2 RT 2: 205071-210086 bp Neighborhood of RT #1 [20876, 27604] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Neighborhood of RT #2 [205071, 210086] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 20876-21469 bp Feature: gene Location: 21632-23326 bp Ori: QGN24911.1 Feature: domain Description: VirB4 Location: 21950-22634 bp Feature: domain Description: VirB4 Location: 21 950-22634 bp Feature: gene Location: 24014-25891 bp Ori: QGN24912.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24329-25067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24329-25067 bp Feature: domain Description: HNHc Note: nucleases Location: 25625-25778 bp Feature: domain Description: HNHc Note: nucleases Location: 25625-25778 bp Feature: gene Location: 26022-26399 bp Feature: gene Location: 26399-27604 bp Ori: QGN24913.1 Feature: domain Description: Glucosaminidase Location: 26675-27071 bp Feature: domain Description: Glucosaminidase Location: 26675-27071 bp Feature: domain Description: Peptidase_M23 Location: 27248-27485 bp Feature: domain Description: Peptidase_M23 Location: 27248-27485 bp Feature: gene Location: 205071-205568 bp Ori: QGN25057.1 Feature: domain Description: ArdA Location: 205089-205554 bp Feature: domain Description: ArdA Location: 205089-205554 bp Feature: gene Location: 205685-205909 bp Feature: gene Location: 206013-207923 bp Ori: QGN25059.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206346-207084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206346-207084 bp Feature: domain Description: HNHc Note: nucleases Location: 207639-207804 bp Feature: domain Description: HNHc Note: nucleases Location: 207639-207804 bp Feature: gene Location: 208707-209912 bp Ori: QGN25060.1 Feature: domain Description: HTH_XRE Location: 208752-208896 bp Feature: domain Description: HTH_XRE Location: 208752-208896 bp Feature: domain Description: Rol_Rep_N Location: 208923-209190 bp Feature: domain Description: Rol_Rep_N Location: 208923-2091 90 bp Feature: domain Description: Rep_trans Location: 209214-209823 bp Feature: domain Description: Rep_trans Location: 20921 4-209823 bp Feature: gene Location: 209935-210086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), ArdA (pfam07275), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: CP046077.1 Enterococcus faecium strain VRE chromosome, complete genome (3029645 bp)
Overview 1 RT 1: 397614-403551 bp 2 RT 2: 1253646-1259504 bp 3 RT 3: 1437886-1443265 bp 4 RT 4: 1924164-1928902 bp 5 RT 5: 2871234-2882148 bp Neighborhood of RT #1 [397614, 403559] dha_L_ycgS G6PD_bact RVT-GII GIIM Crp TnrB3 Neighborhood of RT #2 [1253646, 1259527] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Neighborhood of RT #3 [1437886, 1443267] doc_partner Doc RVT-GII GIIM ldh AraC_binding YesN Neighborhood of RT #4 [1924164, 1928979] ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Neighborhood of RT #5 [2871234, 2882162] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK Dcm HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Feature: gene Location: 397614-398219 bp Ori: QGN25466.1 Gene: dhaL Feature: domain Description: dha_L_ycgS Location: 397638-398196 bp Feature: domain Description: dha_L_ycgS Location: 397638-398196 bp Feature: gene Location: 398366-399031 bp Ori: QGN25467.1 Feature: domain Description: G6PD_bact Location: 398375-399011 bp Feature: domain Description: G6PD_bact Location: 398375-399011 bp Feature: gene Location: 399536-400924 bp Ori: QGN25468.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399857-400472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399857-400472 bp Feature: domain Description: GIIM Note: maturase Location: 400529-400745 bp Feature: domain Description: GIIM Note: maturase Location: 40052 9-400745 bp Feature: gene Location: 401213-401872 bp Ori: QGN25469.1 Feature: domain Description: Crp Location: 401264-401846 bp Feature: domain Description: Crp Location: 4012 64-401846 bp Feature: gene Location: 401949-403559 bp Ori: QGN25470.1 Feature: domain Description: TnrB3 Location: 401961-403551 bp Feature: domain Description: TnrB3 Location: 401961-403551 bp Feature: gene Location: 1253646-1254779 bp Ori: QGN26244.1 Gene: purK Feature: domain Description: PRK06019 Location: 1253679-1254768 bp Feature: domain Description: PRK06019 Location: 12 53679-12 54768 bp Feature: gene Location: 1254792-1256087 bp Ori: QGN26245.1 Gene: purB Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1254804-1256073 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 12 54804-12 56073 bp Feature: gene Location: 1256209-1257597 bp Ori: QGN26246.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1256530-1257145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 56530-12 57145 bp Feature: domain Description: GIIM Note: maturase Location: 1257202-1257418 bp Feature: domain Description: GIIM Note: maturase Location: 12 572 02 -12 57418 bp Feature: gene Location: 1258166-1258543 bp Feature: gene Location: 1258799-1259527 bp Ori: QGN26248.1 Feature: domain Description: PRK09362 Location: 1258802-1259504 bp Feature: domain Description: PRK09362 Location: 12 58802 -12 59504 bp Feature: gene Location: 1437886-1438122 bp Ori: QGN26402.1 Feature: domain Description: doc_partner Location: 1437907-1438117 bp Feature: domain Description: doc_partner Location: 1437907-1438117 bp Feature: gene Location: 1438119-1438517 bp Ori: QGN26403.1 Feature: domain Description: Doc Location: 1438128-1438488 bp Feature: domain Description: Doc Location: 143812 8-1438488 bp Feature: gene Location: 1439596-1440984 bp Ori: QGN26404.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1439917-1440532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1439917-1440532 bp Feature: domain Description: GIIM Note: maturase Location: 1440589-1440805 bp Feature: domain Description: GIIM Note: maturase Location: 1440589-1440805 bp Feature: gene Location: 1441083-1442027 bp Ori: QGN26405.1 Feature: domain Description: ldh Location: 1441086-1442022 bp Feature: domain Description: ldh Location: 1441086-1442 02 2 bp Feature: gene Location: 1442323-1443267 bp Ori: QGN26406.1 Feature: domain Description: AraC_binding Location: 1442464-1442647 bp Feature: domain Description: AraC_binding Location: 1442 464-1442 647 bp Feature: domain Description: YesN Location: 1442749-1443265 bp Feature: domain Description: YesN Location: 1442 749-14432 65 bp Feature: gene Location: 1924164-1924664 bp Ori: QGN26845.1 Feature: domain Description: ArdA Location: 1924182-1924653 bp Feature: domain Description: ArdA Location: 192 4182 -192 4653 bp Feature: gene Location: 1924677-1924901 bp Feature: gene Location: 1925005-1926915 bp Ori: QGN26847.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1925338-1926076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 5338-192 6076 bp Feature: domain Description: HNHc Note: nucleases Location: 1926631-1926796 bp Feature: domain Description: HNHc Note: nucleases Location: 192 6631-192 6796 bp Feature: gene Location: 1927661-1927798 bp Ori: QGN26848.1 Feature: domain Description: DUF3789 Location: 1927688-1927781 bp Feature: domain Description: DUF3789 Location: 192 7688-192 7781 bp Feature: gene Location: 1927795-1928979 bp Ori: QGN26849.1 Feature: domain Description: HTH_XRE Location: 1927825-1927969 bp Feature: domain Description: HTH_XRE Location: 192 782 5-192 7969 bp Feature: domain Description: Rol_Rep_N Location: 1928002-1928266 bp Feature: domain Description: Rol_Rep_N Location: 192 8002 -192 82 66 bp Feature: domain Description: Rep_trans Location: 1928290-1928902 bp Feature: domain Description: Rep_trans Location: 192 82 90-192 8902 bp Feature: gene Location: 2871234-2871587 bp Ori: QGN27693.1 Feature: domain Description: RelB_DinJ Location: 2871453-2871579 bp Feature: domain Description: RelB_DinJ Location: 2 871453-2 871579 bp Feature: gene Location: 2871656-2872672 bp Ori: QGN27694.1 Feature: domain Description: FtsK_SpoIIIE Location: 2872313-2872553 bp Feature: domain Description: FtsK_SpoIIIE Location: 2 872 313-2 872 553 bp Feature: gene Location: 2873266-2875140 bp Ori: QGN27695.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2873632-2874328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 873632 -2 87432 8 bp Feature: domain Description: HNHc Note: nucleases Location: 2874868-2875027 bp Feature: domain Description: HNHc Note: nucleases Location: 2 874868-2 87502 7 bp Feature: gene Location: 2875266-2875622 bp Ori: QGN27922.1 Feature: domain Description: FtsK Location: 2875278-2875497 bp Feature: domain Description: FtsK Location: 2 8752 78-2 875497 bp Feature: gene Location: 2875667-2876809 bp Ori: QGN27696.1 Gene: dcm Feature: domain Description: Dcm Location: 2875670-2876783 bp Feature: domain Description: Dcm Location: 2 875670-2 876783 bp Feature: gene Location: 2877344-2878528 bp Ori: QGN27697.1 Feature: domain Description: HTH_XRE Location: 2877374-2877518 bp Feature: domain Description: HTH_XRE Location: 2 877374-2 877518 bp Feature: domain Description: Rol_Rep_N Location: 2877551-2877815 bp Feature: domain Description: Rol_Rep_N Location: 2 877551-2 877815 bp Feature: domain Description: Rep_trans Location: 2877839-2878451 bp Feature: domain Description: Rep_trans Location: 2 877839-2 878451 bp Feature: gene Location: 2878525-2878638 bp Ori: QGN27698.1 Feature: domain Description: DUF3789 Location: 2878552-2878636 bp Feature: domain Description: DUF3789 Location: 2 878552 -2 878636 bp Feature: gene Location: 2879408-2881318 bp Ori: QGN27699.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2879741-2880479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 879741-2 880479 bp Feature: domain Description: HNHc Note: nucleases Location: 2881034-2881199 bp Feature: domain Description: HNHc Note: nucleases Location: 2 881034-2 881199 bp Feature: gene Location: 2881422-2881646 bp Feature: gene Location: 2881659-2882162 bp Ori: QGN27701.1 Feature: domain Description: ArdA Location: 2881677-2882148 bp Feature: domain Description: ArdA Location: 2 881677-2 882 148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dha_L_ycgS (TIGR02365), G6PD_bact (pfam10786), RVT-GII, GIIM (pfam08388), Crp (pfam00325), TnrB3 (COG3559), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), doc_partner (TIGR02609)
Doc (COG3654), ldh (PRK00066), AraC_binding (pfam02311), YesN (COG4753), ArdA (pfam07275), HNHc (smart00507), DUF3789 (pfam12664), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)
RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), FtsK (COG1674), Dcm (COG0270)