myRT

myRT report for GCA_009708235.1_ASM970823v1

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Seq: CP038811.1 Piscirickettsia salmonis strain Psal-001 chromosome, complete genome (3116276 bp)
Overview 1 RT 1: 892179-894853 bp 2 RT 2: 983411-988947 bp 3 RT 3: 1121504-1125803 bp 4 RT 4: 1293510-1298000 bp 5 RT 5: 1395294-1399768 bp 6 RT 6: 1759452-1763795 bp 7 RT 7: 1917209-1921366 bp 8 RT 8: 3090661-3094779 bp Neighborhood of RT #1 [892179, 894853] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [983411, 989396] MoxR MDR_like_2 RVT-GII HATPase_c_2 DDE_5 Neighborhood of RT #3 [1121504, 1125835] Y2_Tnp RVT-GII HTH_Tnp_1 HTH_21 Tra5 Neighborhood of RT #4 [1293510, 1298000] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #5 [1395294, 1399827] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII HTH_21 Tra5 HTH_Tnp_1 Neighborhood of RT #6 [1759452, 1763806] HTH_Tnp_1 RVT-GII PHA02517 InsE RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #7 [1917209, 1921377] Zn_Tnp_IS91 PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #8 [3090661, 3094790] COG2958 Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 Feature: gene Location: 892179-892628 bp Ori: QGN76736.1 Feature: domain Description: DDE_3 Location: 892191-892551 bp Feature: domain Description: DDE_3 Location: 8921 91 -892551 bp Feature: gene Location: 892700-893065 bp Ori: QGN76737.1 Feature: domain Description: HTH_Tnp_IS630 Location: 892715-893054 bp Feature: domain Description: HTH_Tnp_IS630 Location: 89271 5-893054 bp Feature: gene Location: 893183-893740 bp Ori: QGN76738.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 893189-893381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8931 89-893381 bp Feature: gene Location: 893842-894240 bp Ori: QGN76739.1 Feature: domain Description: Zn_Tnp_IS91 Location: 893854-894085 bp Feature: domain Description: Zn_Tnp_IS91 Location: 893854-894085 bp Feature: gene Location: 894326-894853 bp Feature: gene Location: 983411-984406 bp Ori: QGN76829.1 Feature: domain Description: MoxR Location: 983462-984404 bp Feature: domain Description: MoxR Location: 983462-984404 bp Feature: gene Location: 984626-985588 bp Ori: QGN76830.1 Feature: domain Description: MDR_like_2 Location: 984629-985568 bp Feature: domain Description: MDR_like_2 Location: 984629-985568 bp Feature: gene Location: 986296-986997 bp Ori: QGN76831.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986302-986620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986302-986620 bp Feature: gene Location: 987967-988287 bp Ori: QGN76832.1 Feature: domain Description: HATPase_c_2 Location: 987991-988270 bp Feature: domain Description: HATPase_c_2 Location: 987991 -988270 bp Feature: gene Location: 988335-989396 bp Ori: QGN76833.1 Feature: domain Description: DDE_5 Location: 988356-988947 bp Feature: domain Description: DDE_5 Location: 988356-988947 bp Feature: gene Location: 1121504-1122319 bp Ori: QGN76962.1 Feature: domain Description: Y2_Tnp Location: 1121591-1122089 bp Feature: domain Description: Y2_Tnp Location: 1 1 21 591 -1 1 22089 bp Feature: gene Location: 1122700-1123686 bp Ori: QGN76963.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1122982-1123660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 22982-1 1 23660 bp Feature: gene Location: 1124715-1124987 bp Ori: QGN76964.1 Feature: domain Description: HTH_Tnp_1 Location: 1124724-1124928 bp Feature: domain Description: HTH_Tnp_1 Location: 1 1 24724-1 1 24928 bp Feature: gene Location: 1124999-1125835 bp Ori: QGN76965.1 Feature: domain Description: HTH_21 Location: 1125122-1125275 bp Feature: domain Description: HTH_21 Location: 1 1 251 22-1 1 25275 bp Feature: domain Description: Tra5 Location: 1125323-1125803 bp Feature: domain Description: Tra5 Location: 1 1 25323-1 1 25803 bp Feature: gene Location: 1293510-1294067 bp Feature: gene Location: 1294256-1294654 bp Ori: QGN77129.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1294268-1294499 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 294268-1 294499 bp Feature: gene Location: 1294756-1296078 bp Ori: QGN77130.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1295038-1295719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 295038-1 29571 9 bp Feature: gene Location: 1296487-1297302 bp Ori: QGN77131.1 Feature: domain Description: Y2_Tnp Location: 1296574-1297075 bp Feature: domain Description: Y2_Tnp Location: 1 296574-1 297075 bp Feature: gene Location: 1297464-1298000 bp Feature: gene Location: 1395294-1395956 bp Ori: QGN77227.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1395342-1395918 bp Feature: domain Description: beta_CA_cladeB Location: 1 395342-1 39591 8 bp Feature: gene Location: 1396478-1396978 bp Ori: QGN77228.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1396550-1396823 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 396550-1 396823 bp Feature: gene Location: 1397080-1398282 bp Ori: QGN77229.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1397242-1397923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 397242-1 397923 bp Feature: gene Location: 1398707-1399543 bp Ori: QGN77230.1 Feature: domain Description: HTH_21 Location: 1398830-1398983 bp Feature: domain Description: HTH_21 Location: 1 398830-1 398983 bp Feature: domain Description: Tra5 Location: 1399031-1399511 bp Feature: domain Description: Tra5 Location: 1 399031 -1 39951 1 bp Feature: gene Location: 1399555-1399827 bp Ori: QGN77231.1 Feature: domain Description: HTH_Tnp_1 Location: 1399564-1399768 bp Feature: domain Description: HTH_Tnp_1 Location: 1 399564-1 399768 bp Feature: gene Location: 1759452-1759568 bp Feature: gene Location: 1759638-1760063 bp Ori: QGN77603.1 Feature: domain Description: HTH_Tnp_1 Location: 1759743-1759974 bp Feature: domain Description: HTH_Tnp_1 Location: 1 759743-1 759974 bp Feature: gene Location: 1760100-1760717 bp Ori: QGN77604.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1760103-1760514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7601 03-1 76051 4 bp Feature: gene Location: 1760795-1761607 bp Ori: QGN77605.1 Feature: domain Description: PHA02517 Location: 1760810-1761593 bp Feature: domain Description: PHA0251 7 Location: 1 76081 0-1 761 593 bp Feature: gene Location: 1761655-1761948 bp Ori: QGN77606.1 Feature: domain Description: InsE Location: 1761661-1761940 bp Feature: domain Description: InsE Location: 1 761 661 -1 761 940 bp Feature: gene Location: 1761908-1762432 bp Ori: QGN77607.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1762109-1762337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7621 09-1 762337 bp Feature: gene Location: 1762922-1763419 bp Ori: QGN77608.1 Feature: domain Description: Y2_Tnp Location: 1763009-1763381 bp Feature: domain Description: Y2_Tnp Location: 1 763009-1 763381 bp Feature: gene Location: 1763441-1763806 bp Ori: QGN77609.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1763456-1763795 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 763456-1 763795 bp Feature: gene Location: 1917209-1917619 bp Ori: QGN77766.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1917230-1917464 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 91 7230-1 91 7464 bp Feature: gene Location: 1918454-1919266 bp Ori: QGN77767.1 Feature: domain Description: PHA02517 Location: 1918469-1919252 bp Feature: domain Description: PHA0251 7 Location: 1 91 8469-1 91 9252 bp Feature: gene Location: 1919692-1920252 bp Ori: QGN77768.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1919974-1920223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 9974-1 920223 bp Feature: gene Location: 1920661-1920990 bp Ori: QGN77769.1 Feature: domain Description: Y2_Tnp Location: 1920748-1920895 bp Feature: domain Description: Y2_Tnp Location: 1 920748-1 920895 bp Feature: gene Location: 1921012-1921377 bp Ori: QGN77770.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1921027-1921366 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 921 027-1 921 366 bp Feature: gene Location: 3090661-3090876 bp Ori: QGN78980.1 Feature: domain Description: COG2958 Location: 3090664-3090871 bp Feature: domain Description: COG2958 Location: 3090664-3090871 bp Feature: gene Location: 3091275-3091670 bp Ori: QGN78981.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3091362-3091554 bp Feature: domain Description: Zn_Tnp_IS91 Location: 3091 362-3091 554 bp Feature: gene Location: 3091882-3093201 bp Ori: QGN78982.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3092164-3092842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30921 64-3092842 bp Feature: gene Location: 3093898-3094149 bp Feature: gene Location: 3094425-3094790 bp Ori: QGN78984.1 Feature: domain Description: HTH_Tnp_IS630 Location: 3094440-3094779 bp Feature: domain Description: HTH_Tnp_IS630 Location: 3094440-3094779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), MoxR (COG0714), MDR_like_2 (cd05289), HATPase_c_2 (pfam13581), DDE_5 (pfam13546), Y2_Tnp (pfam04986), HTH_Tnp_1 (pfam01527)
HTH_21 (pfam13276), Tra5 (COG2801), beta_CA_cladeB (cd00884), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), COG2958 (Uncharacterized protein )

Seq: CP038812.1 Piscirickettsia salmonis strain Psal-001 plasmid unnamed1, complete sequence (150781 bp)
Overview 1 RT 1: 68533-71445 bp 2 RT 2: 111421-115618 bp 3 RT 3: 126398-131872 bp Neighborhood of RT #1 [68533, 71459] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #2 [111421, 115632] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #3 [126398, 131913] Zn_Tnp_IS91 PHA02517 RVT-GII InsE Y2_Tnp Phage_integrase Feature: gene Location: 68533-68982 bp Ori: QGN79097.1 Feature: domain Description: DDE_3 Location: 68545-68905 bp Feature: domain Description: DDE_3 Location: 68545-68905 bp Feature: gene Location: 69054-69419 bp Ori: QGN79098.1 Feature: domain Description: HTH_Tnp_IS630 Location: 69069-69408 bp Feature: domain Description: HTH_Tnp_IS630 Location: 69069-69408 bp Feature: gene Location: 69519-70535 bp Ori: QGN79099.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69522-70176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6952 2 -70176 bp Feature: gene Location: 70637-71035 bp Ori: QGN79100.1 Feature: domain Description: Zn_Tnp_IS91 Location: 70649-70880 bp Feature: domain Description: Zn_Tnp_IS91 Location: 70649-70880 bp Feature: gene Location: 71121-71459 bp Ori: QGN79101.1 Feature: domain Description: major_cap_HK97 Location: 71184-71445 bp Feature: domain Description: major_cap_HK97 Location: 71184-71445 bp Feature: gene Location: 111421-111885 bp Ori: QGN79164.1 Feature: domain Description: HTH_3 Location: 111430-111571 bp Feature: domain Description: HTH_3 Location: 111430-111571 bp Feature: gene Location: 112818-113342 bp Ori: QGN79165.1 Feature: domain Description: Y2_Tnp Location: 112905-113301 bp Feature: domain Description: Y2 _Tnp Location: 112 905-113301 bp Feature: gene Location: 113751-114458 bp Ori: QGN79166.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114033-114423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114033-11442 3 bp Feature: gene Location: 114479-114772 bp Ori: QGN79167.1 Feature: domain Description: InsE Location: 114485-114764 bp Feature: domain Description: InsE Location: 114485-114764 bp Feature: gene Location: 114820-115632 bp Ori: QGN79168.1 Feature: domain Description: PHA02517 Location: 114835-115618 bp Feature: domain Description: PHA02 517 Location: 114835-115618 bp Feature: gene Location: 126398-126898 bp Ori: QGN79187.1 Feature: domain Description: Zn_Tnp_IS91 Location: 126470-126743 bp Feature: domain Description: Zn_Tnp_IS91 Location: 12 6470-12 6743 bp Feature: gene Location: 127326-128138 bp Ori: QGN79188.1 Feature: domain Description: PHA02517 Location: 127341-128124 bp Feature: domain Description: PHA02 517 Location: 12 7341-12 812 4 bp Feature: gene Location: 128186-129565 bp Ori: QGN79189.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128468-129146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 8468-12 9146 bp Feature: domain Description: InsE Location: 129284-129557 bp Feature: domain Description: InsE Location: 12 92 84-12 9557 bp Feature: gene Location: 130262-131077 bp Ori: QGN79190.1 Feature: domain Description: Y2_Tnp Location: 130349-130847 bp Feature: domain Description: Y2 _Tnp Location: 130349-130847 bp Feature: gene Location: 131323-131913 bp Ori: QGN79191.1 Feature: domain Description: Phage_integrase Location: 131350-131872 bp Feature: domain Description: Phage_integrase Location: 131350-131872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), major_cap_HK97 (TIGR01554), HTH_3 (pfam01381), Y2_Tnp (pfam04986), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Phage_integrase (pfam00589)