myRT

myRT report for GCA_009708255.1_ASM970825v1

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Seq: CP038877.1 Piscirickettsia salmonis strain Psal-002 plasmid unnamed1, complete sequence (153781 bp)
Overview 1 RT 1: 68482-71394 bp 2 RT 2: 114421-118618 bp 3 RT 3: 129398-134872 bp Neighborhood of RT #1 [68482, 71408] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #2 [114421, 118632] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #3 [129398, 134913] Zn_Tnp_IS91 PHA02517 RVT-GII InsE Y2_Tnp Phage_integrase Feature: gene Location: 68482-68931 bp Ori: QGN82681.1 Feature: domain Description: DDE_3 Location: 68494-68854 bp Feature: domain Description: DDE_3 Location: 68494-68854 bp Feature: gene Location: 69003-69368 bp Ori: QGN82682.1 Feature: domain Description: HTH_Tnp_IS630 Location: 69018-69357 bp Feature: domain Description: HTH_Tnp_IS630 Location: 6901 8-69357 bp Feature: gene Location: 69468-70484 bp Ori: QGN82683.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69471-70125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69471 -701 25 bp Feature: gene Location: 70586-70984 bp Ori: QGN82684.1 Feature: domain Description: Zn_Tnp_IS91 Location: 70598-70829 bp Feature: domain Description: Zn_Tnp_IS91 Location: 70598-70829 bp Feature: gene Location: 71070-71408 bp Ori: QGN82685.1 Feature: domain Description: major_cap_HK97 Location: 71133-71394 bp Feature: domain Description: major_cap_HK97 Location: 71 1 33-71 394 bp Feature: gene Location: 114421-114885 bp Ori: QGN82755.1 Feature: domain Description: HTH_3 Location: 114430-114571 bp Feature: domain Description: HTH_3 Location: 1 1 4430-1 1 4571 bp Feature: gene Location: 115818-116342 bp Ori: QGN82756.1 Feature: domain Description: Y2_Tnp Location: 115905-116301 bp Feature: domain Description: Y2_Tnp Location: 1 1 5905-1 1 6301 bp Feature: gene Location: 116751-117458 bp Ori: QGN82757.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117033-117423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 7033-1 1 7423 bp Feature: gene Location: 117479-117772 bp Ori: QGN82758.1 Feature: domain Description: InsE Location: 117485-117764 bp Feature: domain Description: InsE Location: 1 1 7485-1 1 7764 bp Feature: gene Location: 117820-118632 bp Ori: QGN82759.1 Feature: domain Description: PHA02517 Location: 117835-118618 bp Feature: domain Description: PHA0251 7 Location: 1 1 7835-1 1 861 8 bp Feature: gene Location: 129398-129898 bp Ori: QGN82778.1 Feature: domain Description: Zn_Tnp_IS91 Location: 129470-129743 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 29470-1 29743 bp Feature: gene Location: 130326-131138 bp Ori: QGN82779.1 Feature: domain Description: PHA02517 Location: 130341-131124 bp Feature: domain Description: PHA0251 7 Location: 1 30341 -1 31 1 24 bp Feature: gene Location: 131186-132565 bp Ori: QGN82780.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131468-132146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 468-1 321 46 bp Feature: domain Description: InsE Location: 132284-132557 bp Feature: domain Description: InsE Location: 1 32284-1 32557 bp Feature: gene Location: 133262-134077 bp Ori: QGN82781.1 Feature: domain Description: Y2_Tnp Location: 133349-133847 bp Feature: domain Description: Y2_Tnp Location: 1 33349-1 33847 bp Feature: gene Location: 134323-134913 bp Ori: QGN82782.1 Feature: domain Description: Phage_integrase Location: 134350-134872 bp Feature: domain Description: Phage_integrase Location: 1 34350-1 34872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), major_cap_HK97 (TIGR01554), HTH_3 (pfam01381), Y2_Tnp (pfam04986), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Phage_integrase (pfam00589)

Seq: CP038876.1 Piscirickettsia salmonis strain Psal-002 chromosome, complete genome (3142869 bp)
Overview 1 RT 1: 919158-921832 bp 2 RT 2: 1010391-1015927 bp 3 RT 3: 1148486-1152785 bp 4 RT 4: 1320494-1324984 bp 5 RT 5: 1422278-1426752 bp 6 RT 6: 1785317-1789660 bp 7 RT 7: 1943076-1947233 bp 8 RT 8: 3117254-3121372 bp Neighborhood of RT #1 [919158, 921832] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1010391, 1016376] MoxR MDR_like_2 RVT-GII HATPase_c_2 DDE_5 Neighborhood of RT #3 [1148486, 1152817] Y2_Tnp RVT-GII HTH_Tnp_1 HTH_21 Tra5 Neighborhood of RT #4 [1320494, 1324984] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #5 [1422278, 1426811] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII HTH_21 Tra5 HTH_Tnp_1 Neighborhood of RT #6 [1785317, 1789671] HTH_Tnp_1 RVT-GII PHA02517 InsE RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #7 [1943076, 1947244] Zn_Tnp_IS91 PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #8 [3117254, 3121383] COG2958 Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 Feature: gene Location: 919158-919607 bp Ori: QGN80326.1 Feature: domain Description: DDE_3 Location: 919170-919530 bp Feature: domain Description: DDE_3 Location: 919170-919530 bp Feature: gene Location: 919679-920044 bp Ori: QGN80327.1 Feature: domain Description: HTH_Tnp_IS630 Location: 919694-920033 bp Feature: domain Description: HTH_Tnp_IS630 Location: 919694-92 0033 bp Feature: gene Location: 920162-920719 bp Ori: QGN80328.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 920168-920360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 0168-92 0360 bp Feature: gene Location: 920821-921219 bp Ori: QGN80329.1 Feature: domain Description: Zn_Tnp_IS91 Location: 920833-921064 bp Feature: domain Description: Zn_Tnp_IS91 Location: 92 0833-92 1064 bp Feature: gene Location: 921305-921832 bp Feature: gene Location: 1010391-1011386 bp Ori: QGN80419.1 Feature: domain Description: MoxR Location: 1010442-1011384 bp Feature: domain Description: MoxR Location: 1010442 -1011384 bp Feature: gene Location: 1011606-1012568 bp Ori: QGN80420.1 Feature: domain Description: MDR_like_2 Location: 1011609-1012548 bp Feature: domain Description: MDR_like_2 Location: 1011609-1012 548 bp Feature: gene Location: 1013276-1013977 bp Ori: QGN80421.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1013282-1013600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10132 82 -1013600 bp Feature: gene Location: 1014947-1015267 bp Ori: QGN80422.1 Feature: domain Description: HATPase_c_2 Location: 1014971-1015250 bp Feature: domain Description: HATPase_c_2 Location: 1014971-10152 50 bp Feature: gene Location: 1015315-1016376 bp Ori: QGN80423.1 Feature: domain Description: DDE_5 Location: 1015336-1015927 bp Feature: domain Description: DDE_5 Location: 1015336-101592 7 bp Feature: gene Location: 1148486-1149301 bp Ori: QGN80552.1 Feature: domain Description: Y2_Tnp Location: 1148573-1149071 bp Feature: domain Description: Y2 _Tnp Location: 1148573-1149071 bp Feature: gene Location: 1149682-1150668 bp Ori: QGN80553.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1149964-1150642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1149964-1150642 bp Feature: gene Location: 1151697-1151969 bp Ori: QGN80554.1 Feature: domain Description: HTH_Tnp_1 Location: 1151706-1151910 bp Feature: domain Description: HTH_Tnp_1 Location: 1151706-1151910 bp Feature: gene Location: 1151981-1152817 bp Ori: QGN80555.1 Feature: domain Description: HTH_21 Location: 1152104-1152257 bp Feature: domain Description: HTH_2 1 Location: 1152 104-1152 2 57 bp Feature: domain Description: Tra5 Location: 1152305-1152785 bp Feature: domain Description: Tra5 Location: 1152 305-1152 785 bp Feature: gene Location: 1320494-1321051 bp Feature: gene Location: 1321240-1321638 bp Ori: QGN80718.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1321252-1321483 bp Feature: domain Description: Zn_Tnp_IS91 Location: 132 12 52 -132 1483 bp Feature: gene Location: 1321740-1323062 bp Ori: QGN80719.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1322022-1322703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 2 02 2 -132 2 703 bp Feature: gene Location: 1323471-1324286 bp Ori: QGN80720.1 Feature: domain Description: Y2_Tnp Location: 1323558-1324059 bp Feature: domain Description: Y2 _Tnp Location: 132 3558-132 4059 bp Feature: gene Location: 1324448-1324984 bp Feature: gene Location: 1422278-1422940 bp Ori: QGN80816.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1422326-1422902 bp Feature: domain Description: beta_CA_cladeB Location: 142 2 32 6-142 2 902 bp Feature: gene Location: 1423462-1423962 bp Ori: QGN80817.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1423534-1423807 bp Feature: domain Description: Zn_Tnp_IS91 Location: 142 3534-142 3807 bp Feature: gene Location: 1424064-1425266 bp Ori: QGN80818.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1424226-1424907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 42 2 6-142 4907 bp Feature: gene Location: 1425691-1426527 bp Ori: QGN80819.1 Feature: domain Description: HTH_21 Location: 1425814-1425967 bp Feature: domain Description: HTH_2 1 Location: 142 5814-142 5967 bp Feature: domain Description: Tra5 Location: 1426015-1426495 bp Feature: domain Description: Tra5 Location: 142 6015-142 6495 bp Feature: gene Location: 1426539-1426811 bp Ori: QGN80820.1 Feature: domain Description: HTH_Tnp_1 Location: 1426548-1426752 bp Feature: domain Description: HTH_Tnp_1 Location: 142 6548-142 6752 bp Feature: gene Location: 1785317-1785433 bp Feature: gene Location: 1785503-1785928 bp Ori: QGN81190.1 Feature: domain Description: HTH_Tnp_1 Location: 1785608-1785839 bp Feature: domain Description: HTH_Tnp_1 Location: 1785608-1785839 bp Feature: gene Location: 1785965-1786582 bp Ori: QGN81191.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1785968-1786379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1785968-1786379 bp Feature: gene Location: 1786660-1787472 bp Ori: QGN81192.1 Feature: domain Description: PHA02517 Location: 1786675-1787458 bp Feature: domain Description: PHA02 517 Location: 1786675-1787458 bp Feature: gene Location: 1787520-1787813 bp Ori: QGN81193.1 Feature: domain Description: InsE Location: 1787526-1787805 bp Feature: domain Description: InsE Location: 178752 6-1787805 bp Feature: gene Location: 1787773-1788297 bp Ori: QGN81194.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1787974-1788202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1787974-17882 02 bp Feature: gene Location: 1788787-1789284 bp Ori: QGN81195.1 Feature: domain Description: Y2_Tnp Location: 1788874-1789246 bp Feature: domain Description: Y2 _Tnp Location: 1788874-17892 46 bp Feature: gene Location: 1789306-1789671 bp Ori: QGN81196.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1789321-1789660 bp Feature: domain Description: HTH_Tnp_IS630 Location: 178932 1-1789660 bp Feature: gene Location: 1943076-1943486 bp Ori: QGN81354.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1943097-1943331 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1943097-1943331 bp Feature: gene Location: 1944321-1945133 bp Ori: QGN81355.1 Feature: domain Description: PHA02517 Location: 1944336-1945119 bp Feature: domain Description: PHA02 517 Location: 1944336-1945119 bp Feature: gene Location: 1945559-1946119 bp Ori: QGN81356.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1945841-1946090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1945841-1946090 bp Feature: gene Location: 1946528-1946857 bp Ori: QGN81357.1 Feature: domain Description: Y2_Tnp Location: 1946615-1946762 bp Feature: domain Description: Y2 _Tnp Location: 1946615-1946762 bp Feature: gene Location: 1946879-1947244 bp Ori: QGN81358.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1946894-1947233 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1946894-19472 33 bp Feature: gene Location: 3117254-3117469 bp Ori: QGN82564.1 Feature: domain Description: COG2958 Location: 3117257-3117464 bp Feature: domain Description: COG2 958 Location: 31172 57-3117464 bp Feature: gene Location: 3117868-3118263 bp Ori: QGN82565.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3117955-3118147 bp Feature: domain Description: Zn_Tnp_IS91 Location: 3117955-3118147 bp Feature: gene Location: 3118475-3119794 bp Ori: QGN82566.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3118757-3119435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3118757-3119435 bp Feature: gene Location: 3120491-3120742 bp Feature: gene Location: 3121018-3121383 bp Ori: QGN82568.1 Feature: domain Description: HTH_Tnp_IS630 Location: 3121033-3121372 bp Feature: domain Description: HTH_Tnp_IS630 Location: 312 1033-312 1372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), MoxR (COG0714), MDR_like_2 (cd05289), HATPase_c_2 (pfam13581), DDE_5 (pfam13546), Y2_Tnp (pfam04986), HTH_Tnp_1 (pfam01527)
HTH_21 (pfam13276), Tra5 (COG2801), beta_CA_cladeB (cd00884), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), COG2958 (Uncharacterized protein )