myRT

myRT report for GCA_009708275.1_ASM970827v1

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Seq: CP038881.1 Piscirickettsia salmonis strain Psal-003 chromosome, complete genome (3131093 bp)
Overview 1 RT 1: 1358203-1362216 bp 2 RT 2: 1515775-1520129 bp 3 RT 3: 1877407-1881902 bp 4 RT 4: 1979234-1983724 bp 5 RT 5: 2152360-2156461 bp 6 RT 6: 2288801-2294784 bp 7 RT 7: 2383345-2385942 bp 8 RT 8: 3105478-3109596 bp Neighborhood of RT #1 [1358203, 1362371] HTH_Tnp_IS630 Y2_Tnp RVT-GII PHA02517 Zn_Tnp_IS91 Neighborhood of RT #2 [1515775, 1520129] HTH_Tnp_IS630 Y2_Tnp RVT-GII InsE PHA02517 RVT-GII HTH_Tnp_1 Neighborhood of RT #3 [1877407, 1881940] HTH_Tnp_1 HTH_21 Tra5 RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #4 [1979234, 1983724] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #5 [2152360, 2156691] HTH_21 Tra5 HTH_Tnp_1 RVT-GII Y2_Tnp Neighborhood of RT #6 [2288801, 2294786] DDE_5 HATPase_c_2 RVT-GII MDR_like_2 MoxR Neighborhood of RT #7 [2383345, 2386019] Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 DDE_3 Neighborhood of RT #8 [3105478, 3109607] COG2958 Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 Feature: gene Location: 1358203-1358568 bp Ori: QGN84370.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1358218-1358557 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 35821 8-1 358557 bp Feature: gene Location: 1358590-1358919 bp Ori: QGN84371.1 Feature: domain Description: Y2_Tnp Location: 1358677-1358824 bp Feature: domain Description: Y2_Tnp Location: 1 358677-1 358824 bp Feature: gene Location: 1359328-1359888 bp Ori: QGN84372.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1359610-1359859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 35961 0-1 359859 bp Feature: gene Location: 1360314-1361126 bp Ori: QGN84373.1 Feature: domain Description: PHA02517 Location: 1360329-1361112 bp Feature: domain Description: PHA0251 7 Location: 1 360329-1 361 1 1 2 bp Feature: gene Location: 1361961-1362371 bp Ori: QGN84374.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1361982-1362216 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 361 982-1 36221 6 bp Feature: gene Location: 1515775-1516140 bp Ori: QGN84531.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1515790-1516129 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 51 5790-1 51 61 29 bp Feature: gene Location: 1516162-1516659 bp Ori: QGN84532.1 Feature: domain Description: Y2_Tnp Location: 1516249-1516621 bp Feature: domain Description: Y2_Tnp Location: 1 51 6249-1 51 6621 bp Feature: gene Location: 1517149-1517673 bp Ori: QGN84533.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1517350-1517578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 7350-1 51 7578 bp Feature: gene Location: 1517633-1517926 bp Ori: QGN84534.1 Feature: domain Description: InsE Location: 1517639-1517918 bp Feature: domain Description: InsE Location: 1 51 7639-1 51 791 8 bp Feature: gene Location: 1517974-1518786 bp Ori: QGN84535.1 Feature: domain Description: PHA02517 Location: 1517989-1518772 bp Feature: domain Description: PHA0251 7 Location: 1 51 7989-1 51 8772 bp Feature: gene Location: 1518864-1519481 bp Ori: QGN84536.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1518867-1519278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 8867-1 51 9278 bp Feature: gene Location: 1519518-1519943 bp Ori: QGN84537.1 Feature: domain Description: HTH_Tnp_1 Location: 1519623-1519854 bp Feature: domain Description: HTH_Tnp_1 Location: 1 51 9623-1 51 9854 bp Feature: gene Location: 1520013-1520129 bp Feature: gene Location: 1877407-1877679 bp Ori: QGN84904.1 Feature: domain Description: HTH_Tnp_1 Location: 1877416-1877620 bp Feature: domain Description: HTH_Tnp_1 Location: 1 87741 6-1 877620 bp Feature: gene Location: 1877691-1878527 bp Ori: QGN84905.1 Feature: domain Description: HTH_21 Location: 1877814-1877967 bp Feature: domain Description: HTH_21 Location: 1 87781 4-1 877967 bp Feature: domain Description: Tra5 Location: 1878015-1878495 bp Feature: domain Description: Tra5 Location: 1 87801 5-1 878495 bp Feature: gene Location: 1878952-1880154 bp Ori: QGN84906.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1879114-1879795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8791 1 4-1 879795 bp Feature: gene Location: 1880256-1880756 bp Ori: QGN84907.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1880328-1880601 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 880328-1 880601 bp Feature: gene Location: 1881278-1881940 bp Ori: QGN84908.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1881326-1881902 bp Feature: domain Description: beta_CA_cladeB Location: 1 881 326-1 881 902 bp Feature: gene Location: 1979234-1979770 bp Feature: gene Location: 1979932-1980747 bp Ori: QGN85004.1 Feature: domain Description: Y2_Tnp Location: 1980019-1980520 bp Feature: domain Description: Y2_Tnp Location: 1 98001 9-1 980520 bp Feature: gene Location: 1981156-1982478 bp Ori: QGN85005.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1981438-1982119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 981 438-1 9821 1 9 bp Feature: gene Location: 1982580-1982978 bp Ori: QGN85006.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1982592-1982823 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 982592-1 982823 bp Feature: gene Location: 1983167-1983724 bp Feature: gene Location: 2152360-2153196 bp Ori: QGN85172.1 Feature: domain Description: HTH_21 Location: 2152483-2152636 bp Feature: domain Description: HTH_21 Location: 21 52483-21 52636 bp Feature: domain Description: Tra5 Location: 2152684-2153164 bp Feature: domain Description: Tra5 Location: 21 52684-21 531 64 bp Feature: gene Location: 2153208-2153480 bp Ori: QGN85173.1 Feature: domain Description: HTH_Tnp_1 Location: 2153217-2153421 bp Feature: domain Description: HTH_Tnp_1 Location: 21 5321 7-21 53421 bp Feature: gene Location: 2154509-2155495 bp Ori: QGN85174.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2154791-2155469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 54791 -21 55469 bp Feature: gene Location: 2155876-2156691 bp Ori: QGN85175.1 Feature: domain Description: Y2_Tnp Location: 2155963-2156461 bp Feature: domain Description: Y2_Tnp Location: 21 55963-21 56461 bp Feature: gene Location: 2288801-2289862 bp Ori: QGN85305.1 Feature: domain Description: DDE_5 Location: 2288822-2289413 bp Feature: domain Description: DDE_5 Location: 2288822-228941 3 bp Feature: gene Location: 2289910-2290230 bp Ori: QGN85306.1 Feature: domain Description: HATPase_c_2 Location: 2289934-2290213 bp Feature: domain Description: HATPase_c_2 Location: 2289934-229021 3 bp Feature: gene Location: 2291200-2291901 bp Ori: QGN85307.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2291206-2291524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2291 206-2291 524 bp Feature: gene Location: 2292609-2293571 bp Ori: QGN85308.1 Feature: domain Description: MDR_like_2 Location: 2292612-2293551 bp Feature: domain Description: MDR_like_2 Location: 229261 2-2293551 bp Feature: gene Location: 2293791-2294786 bp Ori: QGN85309.1 Feature: domain Description: MoxR Location: 2293842-2294784 bp Feature: domain Description: MoxR Location: 2293842-2294784 bp Feature: gene Location: 2383345-2383872 bp Feature: gene Location: 2383958-2384356 bp Ori: QGN85399.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2383970-2384201 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2383970-2384201 bp Feature: gene Location: 2384458-2385015 bp Ori: QGN85400.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2384464-2384656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2384464-2384656 bp Feature: gene Location: 2385133-2385498 bp Ori: QGN85401.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2385148-2385487 bp Feature: domain Description: HTH_Tnp_IS630 Location: 23851 48-2385487 bp Feature: gene Location: 2385570-2386019 bp Ori: QGN85402.1 Feature: domain Description: DDE_3 Location: 2385582-2385942 bp Feature: domain Description: DDE_3 Location: 2385582-2385942 bp Feature: gene Location: 3105478-3105693 bp Ori: QGN86140.1 Feature: domain Description: COG2958 Location: 3105481-3105688 bp Feature: domain Description: COG2958 Location: 31 05481 -31 05688 bp Feature: gene Location: 3106092-3106487 bp Ori: QGN86141.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3106179-3106371 bp Feature: domain Description: Zn_Tnp_IS91 Location: 31 061 79-31 06371 bp Feature: gene Location: 3106699-3108018 bp Ori: QGN86142.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3106981-3107659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 06981 -31 07659 bp Feature: gene Location: 3108715-3108966 bp Feature: gene Location: 3109242-3109607 bp Ori: QGN86144.1 Feature: domain Description: HTH_Tnp_IS630 Location: 3109257-3109596 bp Feature: domain Description: HTH_Tnp_IS630 Location: 31 09257-31 09596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_IS630 (pfam01710), Y2_Tnp (pfam04986), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), Zn_Tnp_IS91 (pfam14319), InsE (COG2963), HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276), Tra5 (COG2801), beta_CA_cladeB (cd00884)
DDE_5 (pfam13546), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), MoxR (COG0714), DDE_3 (pfam13358), COG2958 (Uncharacterized protein )

Seq: CP038882.1 Piscirickettsia salmonis strain Psal-003 plasmid unnamed1, complete sequence (109807 bp)
Overview 1 RT 1: 70447-74644 bp 2 RT 2: 85424-90898 bp Neighborhood of RT #1 [70447, 74658] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #2 [85424, 90939] Zn_Tnp_IS91 PHA02517 RVT-GII InsE Y2_Tnp Phage_integrase Feature: gene Location: 70447-70911 bp Ori: QGN86268.1 Feature: domain Description: HTH_3 Location: 70456-70597 bp Feature: domain Description: HTH_3 Location: 70456-70597 bp Feature: gene Location: 71844-72368 bp Ori: QGN86269.1 Feature: domain Description: Y2_Tnp Location: 71931-72327 bp Feature: domain Description: Y2 _Tnp Location: 71931-72 32 7 bp Feature: gene Location: 72777-73484 bp Ori: QGN86270.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73059-73449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73059-73449 bp Feature: gene Location: 73505-73798 bp Ori: QGN86271.1 Feature: domain Description: InsE Location: 73511-73790 bp Feature: domain Description: InsE Location: 73511-73790 bp Feature: gene Location: 73846-74658 bp Ori: QGN86272.1 Feature: domain Description: PHA02517 Location: 73861-74644 bp Feature: domain Description: PHA02 517 Location: 73861-74644 bp Feature: gene Location: 85424-85924 bp Ori: QGN86291.1 Feature: domain Description: Zn_Tnp_IS91 Location: 85496-85769 bp Feature: domain Description: Zn_Tnp_IS91 Location: 85496-85769 bp Feature: gene Location: 86352-87164 bp Ori: QGN86292.1 Feature: domain Description: PHA02517 Location: 86367-87150 bp Feature: domain Description: PHA02 517 Location: 86367-87150 bp Feature: gene Location: 87212-88591 bp Ori: QGN86293.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87494-88172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87494-88172 bp Feature: domain Description: InsE Location: 88310-88583 bp Feature: domain Description: InsE Location: 88310-88583 bp Feature: gene Location: 89288-90103 bp Ori: QGN86294.1 Feature: domain Description: Y2_Tnp Location: 89375-89873 bp Feature: domain Description: Y2 _Tnp Location: 89375-89873 bp Feature: gene Location: 90349-90939 bp Ori: QGN86295.1 Feature: domain Description: Phage_integrase Location: 90376-90898 bp Feature: domain Description: Phage_integrase Location: 90376-90898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), Y2_Tnp (pfam04986), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Zn_Tnp_IS91 (pfam14319), Phage_integrase (pfam00589)