myRT

myRT report for GCA_009708295.1_ASM970829v1

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Seq: CP038892.1 Piscirickettsia salmonis strain Psal-005 plasmid unnamed1, complete sequence (158589 bp)
Overview 1 RT 1: 88855-91767 bp 2 RT 2: 134793-138990 bp 3 RT 3: 149769-157583 bp Neighborhood of RT #1 [88855, 91781] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #2 [134793, 139004] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #3 [149769, 157624] Zn_Tnp_IS91 PHA02517 RVT-GII InsE HTH_21 Tra5 HTH_Tnp_1 Tra8 RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 88855-89304 bp Ori: QGN93342.1 Feature: domain Description: DDE_3 Location: 88867-89227 bp Feature: domain Description: DDE_3 Location: 88867-89227 bp Feature: gene Location: 89376-89741 bp Ori: QGN93343.1 Feature: domain Description: HTH_Tnp_IS630 Location: 89391-89730 bp Feature: domain Description: HTH_Tnp_IS630 Location: 89391 -89730 bp Feature: gene Location: 89841-90857 bp Ori: QGN93344.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89844-90498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89844-90498 bp Feature: gene Location: 90959-91357 bp Ori: QGN93345.1 Feature: domain Description: Zn_Tnp_IS91 Location: 90971-91202 bp Feature: domain Description: Zn_Tnp_IS91 Location: 90971 -91 202 bp Feature: gene Location: 91443-91781 bp Ori: QGN93346.1 Feature: domain Description: major_cap_HK97 Location: 91506-91767 bp Feature: domain Description: major_cap_HK97 Location: 91 506-91 767 bp Feature: gene Location: 134793-135257 bp Ori: QGN93417.1 Feature: domain Description: HTH_3 Location: 134802-134943 bp Feature: domain Description: HTH_3 Location: 1 34802-1 34943 bp Feature: gene Location: 136190-136714 bp Ori: QGN93418.1 Feature: domain Description: Y2_Tnp Location: 136277-136673 bp Feature: domain Description: Y2_Tnp Location: 1 36277-1 36673 bp Feature: gene Location: 137123-137830 bp Ori: QGN93419.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137405-137795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 37405-1 37795 bp Feature: gene Location: 137851-138144 bp Ori: QGN93420.1 Feature: domain Description: InsE Location: 137857-138136 bp Feature: domain Description: InsE Location: 1 37857-1 381 36 bp Feature: gene Location: 138192-139004 bp Ori: QGN93421.1 Feature: domain Description: PHA02517 Location: 138207-138990 bp Feature: domain Description: PHA0251 7 Location: 1 38207-1 38990 bp Feature: gene Location: 149769-150269 bp Ori: QGN93441.1 Feature: domain Description: Zn_Tnp_IS91 Location: 149841-150114 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 49841 -1 501 1 4 bp Feature: gene Location: 150697-151509 bp Ori: QGN93442.1 Feature: domain Description: PHA02517 Location: 150712-151495 bp Feature: domain Description: PHA0251 7 Location: 1 5071 2-1 51 495 bp Feature: gene Location: 151557-152297 bp Ori: QGN93443.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151563-151878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 563-1 51 878 bp Feature: domain Description: InsE Location: 152016-152289 bp Feature: domain Description: InsE Location: 1 5201 6-1 52289 bp Feature: gene Location: 152620-153456 bp Ori: QGN93444.1 Feature: domain Description: HTH_21 Location: 152743-152896 bp Feature: domain Description: HTH_21 Location: 1 52743-1 52896 bp Feature: domain Description: Tra5 Location: 152944-153424 bp Feature: domain Description: Tra5 Location: 1 52944-1 53424 bp Feature: gene Location: 153468-153740 bp Ori: QGN93445.1 Feature: domain Description: HTH_Tnp_1 Location: 153477-153681 bp Feature: domain Description: HTH_Tnp_1 Location: 1 53477-1 53681 bp Feature: gene Location: 153791-154600 bp Ori: QGN93446.1 Feature: domain Description: Tra8 Location: 153794-154577 bp Feature: domain Description: Tra8 Location: 1 53794-1 54577 bp Feature: gene Location: 154659-155276 bp Ori: QGN93447.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154941-155250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 54941 -1 55250 bp Feature: gene Location: 155973-156788 bp Ori: QGN93448.1 Feature: domain Description: Y2_Tnp Location: 156060-156558 bp Feature: domain Description: Y2_Tnp Location: 1 56060-1 56558 bp Feature: gene Location: 157034-157624 bp Ori: QGN93449.1 Feature: domain Description: Phage_integrase Location: 157061-157583 bp Feature: domain Description: Phage_integrase Location: 1 57061 -1 57583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), major_cap_HK97 (TIGR01554), HTH_3 (pfam01381), Y2_Tnp (pfam04986), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), HTH_21 (pfam13276)
Tra5 (COG2801), HTH_Tnp_1 (pfam01527), Tra8 (COG2826), Phage_integrase (pfam00589)

Seq: CP038891.1 Piscirickettsia salmonis strain Psal-005 chromosome, complete genome (3165215 bp)
Overview 1 RT 1: 914032-916706 bp 2 RT 2: 1005276-1010812 bp 3 RT 3: 1143368-1151074 bp 4 RT 4: 1275804-1280294 bp 5 RT 5: 1806590-1810933 bp 6 RT 6: 1964347-1968504 bp 7 RT 7: 3139600-3143718 bp Neighborhood of RT #1 [914032, 916706] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1005276, 1011261] MoxR MDR_like_2 RVT-GII HATPase_c_2 DDE_5 Neighborhood of RT #3 [1143368, 1151112] Y2_Tnp RVT-GII HTH_Tnp_1 HTH_21 Tra5 RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #4 [1275804, 1280294] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #5 [1806590, 1810944] HTH_Tnp_1 RVT-GII PHA02517 InsE RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #6 [1964347, 1968515] Zn_Tnp_IS91 PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #7 [3139600, 3143729] COG2958 Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 Feature: gene Location: 914032-914481 bp Ori: QGN90929.1 Feature: domain Description: DDE_3 Location: 914044-914404 bp Feature: domain Description: DDE_3 Location: 914044-914404 bp Feature: gene Location: 914553-914918 bp Ori: QGN90930.1 Feature: domain Description: HTH_Tnp_IS630 Location: 914568-914907 bp Feature: domain Description: HTH_Tnp_IS630 Location: 914568-914907 bp Feature: gene Location: 915036-915593 bp Ori: QGN90931.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915042-915234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915042 -9152 34 bp Feature: gene Location: 915695-916093 bp Ori: QGN90932.1 Feature: domain Description: Zn_Tnp_IS91 Location: 915707-915938 bp Feature: domain Description: Zn_Tnp_IS91 Location: 915707-915938 bp Feature: gene Location: 916179-916706 bp Feature: gene Location: 1005276-1006271 bp Ori: QGN91022.1 Feature: domain Description: MoxR Location: 1005327-1006269 bp Feature: domain Description: MoxR Location: 100532 7-10062 69 bp Feature: gene Location: 1006491-1007453 bp Ori: QGN91023.1 Feature: domain Description: MDR_like_2 Location: 1006494-1007433 bp Feature: domain Description: MDR_like_2 Location: 1006494-1007433 bp Feature: gene Location: 1008161-1008862 bp Ori: QGN91024.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1008167-1008485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1008167-1008485 bp Feature: gene Location: 1009832-1010152 bp Ori: QGN91025.1 Feature: domain Description: HATPase_c_2 Location: 1009856-1010135 bp Feature: domain Description: HATPase_c_2 Location: 1009856-1010135 bp Feature: gene Location: 1010200-1011261 bp Ori: QGN91026.1 Feature: domain Description: DDE_5 Location: 1010221-1010812 bp Feature: domain Description: DDE_5 Location: 10102 2 1-1010812 bp Feature: gene Location: 1143368-1144183 bp Ori: QGN91155.1 Feature: domain Description: Y2_Tnp Location: 1143455-1143953 bp Feature: domain Description: Y2 _Tnp Location: 1143455-1143953 bp Feature: gene Location: 1144564-1145550 bp Ori: QGN91156.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1144846-1145524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1144846-114552 4 bp Feature: gene Location: 1146579-1146851 bp Ori: QGN91157.1 Feature: domain Description: HTH_Tnp_1 Location: 1146588-1146792 bp Feature: domain Description: HTH_Tnp_1 Location: 1146588-1146792 bp Feature: gene Location: 1146863-1147699 bp Ori: QGN91158.1 Feature: domain Description: HTH_21 Location: 1146986-1147139 bp Feature: domain Description: HTH_2 1 Location: 1146986-1147139 bp Feature: domain Description: Tra5 Location: 1147187-1147667 bp Feature: domain Description: Tra5 Location: 1147187-1147667 bp Feature: gene Location: 1148124-1149326 bp Ori: QGN91159.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1148286-1148967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11482 86-1148967 bp Feature: gene Location: 1149428-1149928 bp Ori: QGN91160.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1149500-1149773 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1149500-1149773 bp Feature: gene Location: 1150450-1151112 bp Ori: QGN91161.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1150498-1151074 bp Feature: domain Description: beta_CA_cladeB Location: 1150498-1151074 bp Feature: gene Location: 1275804-1276340 bp Feature: gene Location: 1276502-1277317 bp Ori: QGN91286.1 Feature: domain Description: Y2_Tnp Location: 1276589-1277090 bp Feature: domain Description: Y2 _Tnp Location: 12 76589-12 77090 bp Feature: gene Location: 1277726-1279048 bp Ori: QGN91287.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1278008-1278689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 78008-12 78689 bp Feature: gene Location: 1279150-1279548 bp Ori: QGN91288.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1279162-1279393 bp Feature: domain Description: Zn_Tnp_IS91 Location: 12 79162 -12 79393 bp Feature: gene Location: 1279737-1280294 bp Feature: gene Location: 1806590-1806706 bp Feature: gene Location: 1806776-1807201 bp Ori: QGN91822.1 Feature: domain Description: HTH_Tnp_1 Location: 1806881-1807112 bp Feature: domain Description: HTH_Tnp_1 Location: 1806881-1807112 bp Feature: gene Location: 1807238-1807855 bp Ori: QGN91823.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1807241-1807652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18072 41-1807652 bp Feature: gene Location: 1807933-1808745 bp Ori: QGN91824.1 Feature: domain Description: PHA02517 Location: 1807948-1808731 bp Feature: domain Description: PHA02 517 Location: 1807948-1808731 bp Feature: gene Location: 1808793-1809086 bp Ori: QGN91825.1 Feature: domain Description: InsE Location: 1808799-1809078 bp Feature: domain Description: InsE Location: 1808799-1809078 bp Feature: gene Location: 1809046-1809570 bp Ori: QGN91826.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1809247-1809475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18092 47-1809475 bp Feature: gene Location: 1810060-1810557 bp Ori: QGN91827.1 Feature: domain Description: Y2_Tnp Location: 1810147-1810519 bp Feature: domain Description: Y2 _Tnp Location: 1810147-1810519 bp Feature: gene Location: 1810579-1810944 bp Ori: QGN91828.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1810594-1810933 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1810594-1810933 bp Feature: gene Location: 1964347-1964757 bp Ori: QGN91988.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1964368-1964602 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1964368-1964602 bp Feature: gene Location: 1965592-1966404 bp Ori: QGN91989.1 Feature: domain Description: PHA02517 Location: 1965607-1966390 bp Feature: domain Description: PHA02 517 Location: 1965607-1966390 bp Feature: gene Location: 1966830-1967390 bp Ori: QGN91990.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1967112-1967361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1967112 -1967361 bp Feature: gene Location: 1967799-1968128 bp Ori: QGN91991.1 Feature: domain Description: Y2_Tnp Location: 1967886-1968033 bp Feature: domain Description: Y2 _Tnp Location: 1967886-1968033 bp Feature: gene Location: 1968150-1968515 bp Ori: QGN91992.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1968165-1968504 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1968165-1968504 bp Feature: gene Location: 3139600-3139815 bp Ori: QGN93200.1 Feature: domain Description: COG2958 Location: 3139603-3139810 bp Feature: domain Description: COG2 958 Location: 3139603-3139810 bp Feature: gene Location: 3140214-3140609 bp Ori: QGN93201.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3140301-3140493 bp Feature: domain Description: Zn_Tnp_IS91 Location: 3140301-3140493 bp Feature: gene Location: 3140821-3142140 bp Ori: QGN93202.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3141103-3141781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3141103-3141781 bp Feature: gene Location: 3142837-3143088 bp Feature: gene Location: 3143364-3143729 bp Ori: QGN93204.1 Feature: domain Description: HTH_Tnp_IS630 Location: 3143379-3143718 bp Feature: domain Description: HTH_Tnp_IS630 Location: 3143379-3143718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), MoxR (COG0714), MDR_like_2 (cd05289), HATPase_c_2 (pfam13581), DDE_5 (pfam13546), Y2_Tnp (pfam04986), HTH_Tnp_1 (pfam01527)
HTH_21 (pfam13276), Tra5 (COG2801), beta_CA_cladeB (cd00884), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), COG2958 (Uncharacterized protein )