myRT

myRT report for GCA_009708315.1_ASM970831v1

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Seq: CP038886.1 Piscirickettsia salmonis strain Psal-004 chromosome, complete genome (3130307 bp)
Overview 1 RT 1: 1358215-1362228 bp 2 RT 2: 1515788-1520142 bp 3 RT 3: 1877419-1881914 bp 4 RT 4: 1979246-1983736 bp 5 RT 5: 2151412-2155513 bp 6 RT 6: 2287853-2293836 bp 7 RT 7: 2382397-2384994 bp 8 RT 8: 3104692-3108810 bp Neighborhood of RT #1 [1358215, 1362383] HTH_Tnp_IS630 Y2_Tnp RVT-GII PHA02517 Zn_Tnp_IS91 Neighborhood of RT #2 [1515788, 1520142] HTH_Tnp_IS630 Y2_Tnp RVT-GII InsE PHA02517 RVT-GII HTH_Tnp_1 Neighborhood of RT #3 [1877419, 1881952] HTH_Tnp_1 HTH_21 Tra5 RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #4 [1979246, 1983736] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #5 [2151412, 2155743] HTH_21 Tra5 HTH_Tnp_1 RVT-GII Y2_Tnp Neighborhood of RT #6 [2287853, 2293838] DDE_5 HATPase_c_2 RVT-GII MDR_like_2 MoxR Neighborhood of RT #7 [2382397, 2385071] Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 DDE_3 Neighborhood of RT #8 [3104692, 3108821] COG2958 Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 Feature: gene Location: 1358215-1358580 bp Ori: QGN87880.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1358230-1358569 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 358230-1 358569 bp Feature: gene Location: 1358602-1358931 bp Ori: QGN87881.1 Feature: domain Description: Y2_Tnp Location: 1358689-1358836 bp Feature: domain Description: Y2_Tnp Location: 1 358689-1 358836 bp Feature: gene Location: 1359340-1359900 bp Ori: QGN87882.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1359622-1359871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 359622-1 359871 bp Feature: gene Location: 1360326-1361138 bp Ori: QGN87883.1 Feature: domain Description: PHA02517 Location: 1360341-1361124 bp Feature: domain Description: PHA0251 7 Location: 1 360341 -1 361 1 24 bp Feature: gene Location: 1361973-1362383 bp Ori: QGN87884.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1361994-1362228 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 361 994-1 362228 bp Feature: gene Location: 1515788-1516153 bp Ori: QGN88040.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1515803-1516142 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 51 5803-1 51 61 42 bp Feature: gene Location: 1516175-1516672 bp Ori: QGN88041.1 Feature: domain Description: Y2_Tnp Location: 1516262-1516634 bp Feature: domain Description: Y2_Tnp Location: 1 51 6262-1 51 6634 bp Feature: gene Location: 1517162-1517686 bp Ori: QGN88042.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1517363-1517591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 7363-1 51 7591 bp Feature: gene Location: 1517646-1517939 bp Ori: QGN88043.1 Feature: domain Description: InsE Location: 1517652-1517931 bp Feature: domain Description: InsE Location: 1 51 7652-1 51 7931 bp Feature: gene Location: 1517987-1518799 bp Ori: QGN88044.1 Feature: domain Description: PHA02517 Location: 1518002-1518785 bp Feature: domain Description: PHA0251 7 Location: 1 51 8002-1 51 8785 bp Feature: gene Location: 1518877-1519494 bp Ori: QGN88045.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1518880-1519291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 8880-1 51 9291 bp Feature: gene Location: 1519531-1519956 bp Ori: QGN88046.1 Feature: domain Description: HTH_Tnp_1 Location: 1519636-1519867 bp Feature: domain Description: HTH_Tnp_1 Location: 1 51 9636-1 51 9867 bp Feature: gene Location: 1520026-1520142 bp Feature: gene Location: 1877419-1877691 bp Ori: QGN88413.1 Feature: domain Description: HTH_Tnp_1 Location: 1877428-1877632 bp Feature: domain Description: HTH_Tnp_1 Location: 1 877428-1 877632 bp Feature: gene Location: 1877703-1878539 bp Ori: QGN88414.1 Feature: domain Description: HTH_21 Location: 1877826-1877979 bp Feature: domain Description: HTH_21 Location: 1 877826-1 877979 bp Feature: domain Description: Tra5 Location: 1878027-1878507 bp Feature: domain Description: Tra5 Location: 1 878027-1 878507 bp Feature: gene Location: 1878964-1880166 bp Ori: QGN88415.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1879126-1879807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8791 26-1 879807 bp Feature: gene Location: 1880268-1880768 bp Ori: QGN88416.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1880340-1880613 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 880340-1 88061 3 bp Feature: gene Location: 1881290-1881952 bp Ori: QGN88417.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1881338-1881914 bp Feature: domain Description: beta_CA_cladeB Location: 1 881 338-1 881 91 4 bp Feature: gene Location: 1979246-1979782 bp Feature: gene Location: 1979944-1980759 bp Ori: QGN88513.1 Feature: domain Description: Y2_Tnp Location: 1980031-1980532 bp Feature: domain Description: Y2_Tnp Location: 1 980031 -1 980532 bp Feature: gene Location: 1981168-1982490 bp Ori: QGN88514.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1981450-1982131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 981 450-1 9821 31 bp Feature: gene Location: 1982592-1982990 bp Ori: QGN88515.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1982604-1982835 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 982604-1 982835 bp Feature: gene Location: 1983179-1983736 bp Feature: gene Location: 2151412-2152248 bp Ori: QGN88678.1 Feature: domain Description: HTH_21 Location: 2151535-2151688 bp Feature: domain Description: HTH_21 Location: 21 51 535-21 51 688 bp Feature: domain Description: Tra5 Location: 2151736-2152216 bp Feature: domain Description: Tra5 Location: 21 51 736-21 5221 6 bp Feature: gene Location: 2152260-2152532 bp Ori: QGN88679.1 Feature: domain Description: HTH_Tnp_1 Location: 2152269-2152473 bp Feature: domain Description: HTH_Tnp_1 Location: 21 52269-21 52473 bp Feature: gene Location: 2153561-2154547 bp Ori: QGN88680.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2153843-2154521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 53843-21 54521 bp Feature: gene Location: 2154928-2155743 bp Ori: QGN88681.1 Feature: domain Description: Y2_Tnp Location: 2155015-2155513 bp Feature: domain Description: Y2_Tnp Location: 21 5501 5-21 5551 3 bp Feature: gene Location: 2287853-2288914 bp Ori: QGN88811.1 Feature: domain Description: DDE_5 Location: 2287874-2288465 bp Feature: domain Description: DDE_5 Location: 2287874-2288465 bp Feature: gene Location: 2288962-2289282 bp Ori: QGN88812.1 Feature: domain Description: HATPase_c_2 Location: 2288986-2289265 bp Feature: domain Description: HATPase_c_2 Location: 2288986-2289265 bp Feature: gene Location: 2290252-2290953 bp Ori: QGN88813.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2290258-2290576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2290258-2290576 bp Feature: gene Location: 2291661-2292623 bp Ori: QGN88814.1 Feature: domain Description: MDR_like_2 Location: 2291664-2292603 bp Feature: domain Description: MDR_like_2 Location: 2291 664-2292603 bp Feature: gene Location: 2292843-2293838 bp Ori: QGN88815.1 Feature: domain Description: MoxR Location: 2292894-2293836 bp Feature: domain Description: MoxR Location: 2292894-2293836 bp Feature: gene Location: 2382397-2382924 bp Feature: gene Location: 2383010-2383408 bp Ori: QGN88905.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2383022-2383253 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2383022-2383253 bp Feature: gene Location: 2383510-2384067 bp Ori: QGN88906.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2383516-2383708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238351 6-2383708 bp Feature: gene Location: 2384185-2384550 bp Ori: QGN88907.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2384200-2384539 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2384200-2384539 bp Feature: gene Location: 2384622-2385071 bp Ori: QGN88908.1 Feature: domain Description: DDE_3 Location: 2384634-2384994 bp Feature: domain Description: DDE_3 Location: 2384634-2384994 bp Feature: gene Location: 3104692-3104907 bp Ori: QGN89646.1 Feature: domain Description: COG2958 Location: 3104695-3104902 bp Feature: domain Description: COG2958 Location: 31 04695-31 04902 bp Feature: gene Location: 3105306-3105701 bp Ori: QGN89647.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3105393-3105585 bp Feature: domain Description: Zn_Tnp_IS91 Location: 31 05393-31 05585 bp Feature: gene Location: 3105913-3107232 bp Ori: QGN89648.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3106195-3106873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 061 95-31 06873 bp Feature: gene Location: 3107929-3108180 bp Feature: gene Location: 3108456-3108821 bp Ori: QGN89650.1 Feature: domain Description: HTH_Tnp_IS630 Location: 3108471-3108810 bp Feature: domain Description: HTH_Tnp_IS630 Location: 31 08471 -31 0881 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_IS630 (pfam01710), Y2_Tnp (pfam04986), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), Zn_Tnp_IS91 (pfam14319), InsE (COG2963), HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276), Tra5 (COG2801), beta_CA_cladeB (cd00884)
DDE_5 (pfam13546), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), MoxR (COG0714), DDE_3 (pfam13358), COG2958 (Uncharacterized protein )

Seq: CP038887.1 Piscirickettsia salmonis strain Psal-004 plasmid unnamed1, complete sequence (108848 bp)
Overview 1 RT 1: 69488-73685 bp 2 RT 2: 84465-89939 bp Neighborhood of RT #1 [69488, 73699] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #2 [84465, 89980] Zn_Tnp_IS91 PHA02517 RVT-GII InsE Y2_Tnp Phage_integrase Feature: gene Location: 69488-69952 bp Ori: QGN89772.1 Feature: domain Description: HTH_3 Location: 69497-69638 bp Feature: domain Description: HTH_3 Location: 69497-69638 bp Feature: gene Location: 70885-71409 bp Ori: QGN89773.1 Feature: domain Description: Y2_Tnp Location: 70972-71368 bp Feature: domain Description: Y2 _Tnp Location: 70972 -71368 bp Feature: gene Location: 71818-72525 bp Ori: QGN89774.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72100-72490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 100-72 490 bp Feature: gene Location: 72546-72839 bp Ori: QGN89775.1 Feature: domain Description: InsE Location: 72552-72831 bp Feature: domain Description: InsE Location: 72 552 -72 831 bp Feature: gene Location: 72887-73699 bp Ori: QGN89776.1 Feature: domain Description: PHA02517 Location: 72902-73685 bp Feature: domain Description: PHA02 517 Location: 72 902 -73685 bp Feature: gene Location: 84465-84965 bp Ori: QGN89795.1 Feature: domain Description: Zn_Tnp_IS91 Location: 84537-84810 bp Feature: domain Description: Zn_Tnp_IS91 Location: 84537-84810 bp Feature: gene Location: 85393-86205 bp Ori: QGN89796.1 Feature: domain Description: PHA02517 Location: 85408-86191 bp Feature: domain Description: PHA02 517 Location: 85408-86191 bp Feature: gene Location: 86253-87632 bp Ori: QGN89797.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86535-87213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86535-872 13 bp Feature: domain Description: InsE Location: 87351-87624 bp Feature: domain Description: InsE Location: 87351-8762 4 bp Feature: gene Location: 88329-89144 bp Ori: QGN89798.1 Feature: domain Description: Y2_Tnp Location: 88416-88914 bp Feature: domain Description: Y2 _Tnp Location: 88416-88914 bp Feature: gene Location: 89390-89980 bp Ori: QGN89799.1 Feature: domain Description: Phage_integrase Location: 89417-89939 bp Feature: domain Description: Phage_integrase Location: 89417-89939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), Y2_Tnp (pfam04986), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Zn_Tnp_IS91 (pfam14319), Phage_integrase (pfam00589)